RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 IFI27P40305 119 aaPredicted RBP17.05■□□□□ 0.32
UPF3A-201ENST00000351487 MRPL51Q4U2R6 128 aaKnown RBP17.05■□□□□ 0.32
UPF3A-201ENST00000351487 METTL26Q96S19 204 aa17.05■□□□□ 0.32
UPF3A-201ENST00000351487 U3KQE9 123 aa17.05■□□□□ 0.32
UPF3A-201ENST00000351487 TFPI2P48307 235 aa17.05■□□□□ 0.32
UPF3A-201ENST00000351487 MRPL53Q96EL3 112 aaKnown RBP17.05■□□□□ 0.32
UPF3A-201ENST00000351487 SIGLEC8Q9NYZ4 499 aa17.05■□□□□ 0.32
UPF3A-201ENST00000351487 IGHV1-69DA0A0B4J2H0 117 aa17.04■□□□□ 0.32
UPF3A-201ENST00000351487 IGHV1-69P01742 117 aa17.04■□□□□ 0.32
UPF3A-201ENST00000351487 ERCC8Q13216 396 aa17.04■□□□□ 0.32
UPF3A-201ENST00000351487 LINC01559Q495D7 138 aa17.04■□□□□ 0.32
UPF3A-201ENST00000351487 RNF182Q8N6D2 247 aa17.04■□□□□ 0.32
UPF3A-201ENST00000351487 A0A096LNJ9 63 aa17.04■□□□□ 0.32
UPF3A-201ENST00000351487 hDV102S1A0JD36 115 aa17.04■□□□□ 0.32
UPF3A-201ENST00000351487 TMEM219Q86XT9 240 aa17.04■□□□□ 0.32
UPF3A-201ENST00000351487 PIFOQ8TCI5 191 aa17.04■□□□□ 0.32
UPF3A-201ENST00000351487 ASH1LQ9NR48 2969 aaKnown RBP17.03■□□□□ 0.32
UPF3A-201ENST00000351487 TRAV41A0A0B4J266 112 aa17.03■□□□□ 0.32
UPF3A-201ENST00000351487 FAM223BA6NKX1 122 aa17.03■□□□□ 0.32
UPF3A-201ENST00000351487 ATP5G2Q06055 141 aa17.03■□□□□ 0.32
UPF3A-201ENST00000351487 FAM223AQ8IWN6 122 aa17.03■□□□□ 0.32
UPF3A-201ENST00000351487 ITPR1Q14643 2758 aa17.03■□□□□ 0.32
UPF3A-201ENST00000351487 IGHV3-66A0A0C4DH42 116 aa17.02■□□□□ 0.32
UPF3A-201ENST00000351487 HSBP1L1C9JCN9 74 aa17.02■□□□□ 0.32
UPF3A-201ENST00000351487 TWIST1Q15672 202 aa17.02■□□□□ 0.32
UPF3A-201ENST00000351487 TRAV8-2A0A0B4J237 113 aa17.02■□□□□ 0.32
UPF3A-201ENST00000351487 MUC21A0A0G2JKD1 596 aa17.02■□□□□ 0.32
UPF3A-201ENST00000351487 MUC21A0A140T8X8 626 aa17.02■□□□□ 0.32
UPF3A-201ENST00000351487 ORM1P02763 201 aa17.02■□□□□ 0.32
UPF3A-201ENST00000351487 MUC21Q5SSG8 566 aa17.02■□□□□ 0.32
UPF3A-201ENST00000351487 FAM106AQ4KMX7 169 aa17.01■□□□□ 0.31
UPF3A-201ENST00000351487 PIMREGQ9BSJ6 248 aa17.01■□□□□ 0.31
UPF3A-201ENST00000351487 MS4A6AQ9H2W1 248 aa17.01■□□□□ 0.31
UPF3A-201ENST00000351487 IL17RELQ6ZVW7 336 aa17.01■□□□□ 0.31
UPF3A-201ENST00000351487 MEGF9Q9H1U4 602 aa17.01■□□□□ 0.31
UPF3A-201ENST00000351487 HINT1P49773 126 aaPredicted RBP17■□□□□ 0.31
UPF3A-201ENST00000351487 LOXL1Q08397 574 aaPredicted RBP17■□□□□ 0.31
UPF3A-201ENST00000351487 C8orf86Q6ZUL3 223 aa17■□□□□ 0.31
UPF3A-201ENST00000351487 HIF1ANQ9NWT6 349 aa17■□□□□ 0.31
UPF3A-201ENST00000351487 TRAV40A0A0B4J280 105 aa17■□□□□ 0.31
UPF3A-201ENST00000351487 IGHV4-61A0A0C4DH41 118 aa17■□□□□ 0.31
UPF3A-201ENST00000351487 ZNF124Q15973 351 aa17■□□□□ 0.31
UPF3A-201ENST00000351487 AGPAT4-IT1Q9H0P7 198 aa17■□□□□ 0.31
UPF3A-201ENST00000351487 SCRT2Q9NQ03 307 aa17■□□□□ 0.31
UPF3A-201ENST00000351487 IGHV3OR16-13A0A075B7E8 117 aa16.99■□□□□ 0.31
UPF3A-201ENST00000351487 IGHV3OR16-10A0A075B7F0 116 aa16.99■□□□□ 0.31
UPF3A-201ENST00000351487 IGHV3-74A0A0B4J1X5 117 aa16.99■□□□□ 0.31
UPF3A-201ENST00000351487 LOC389332A0A1B0GUA5 103 aa16.99■□□□□ 0.31
UPF3A-201ENST00000351487 CKS2P33552 79 aa16.99■□□□□ 0.31
UPF3A-201ENST00000351487 MCRIP2Q9BUT9 160 aaKnown RBP16.99■□□□□ 0.31
UPF3A-201ENST00000351487 TIMM8BQ9Y5J9 83 aaPredicted RBP16.99■□□□□ 0.31
UPF3A-201ENST00000351487 NPYP01303 97 aa16.98■□□□□ 0.31
UPF3A-201ENST00000351487 HIST1H1AQ02539 215 aaPredicted RBP16.98■□□□□ 0.31
UPF3A-201ENST00000351487 H0Y8G0 127 aa16.98■□□□□ 0.31
UPF3A-201ENST00000351487 SLC25A34Q6PIV7 304 aa16.98■□□□□ 0.31
UPF3A-201ENST00000351487 C10orf105Q8TEF2 133 aa16.98■□□□□ 0.31
UPF3A-201ENST00000351487 RNF185Q96GF1 192 aa16.98■□□□□ 0.31
UPF3A-201ENST00000351487 PPP1R14DQ9NXH3 145 aa16.98■□□□□ 0.31
UPF3A-201ENST00000351487 GOLT1BQ9Y3E0 138 aa16.98■□□□□ 0.31
UPF3A-201ENST00000351487 ZNF207O43670 478 aaKnown RBP16.97■□□□□ 0.31
UPF3A-201ENST00000351487 PPBPP02775 128 aa16.97■□□□□ 0.31
UPF3A-201ENST00000351487 BRD3OSQ6XYD6 125 aa16.97■□□□□ 0.31
UPF3A-201ENST00000351487 IGHV3-49A0A0A0MS15 119 aa16.97■□□□□ 0.31
UPF3A-201ENST00000351487 NDUFS8O00217 210 aa16.97■□□□□ 0.31
UPF3A-201ENST00000351487 IGF1P05019 195 aa16.97■□□□□ 0.31
UPF3A-201ENST00000351487 C9orf47Q6ZRZ4 202 aa16.97■□□□□ 0.31
UPF3A-201ENST00000351487 MSRB1Q9NZV6 116 aa16.97■□□□□ 0.31
UPF3A-201ENST00000351487 NCR2O95944 276 aa16.96■□□□□ 0.31
UPF3A-201ENST00000351487 HBDP02042 147 aa16.96■□□□□ 0.31
UPF3A-201ENST00000351487 TRGV3P03979 118 aa16.96■□□□□ 0.31
UPF3A-201ENST00000351487 NPSP0C0P6 89 aa16.96■□□□□ 0.31
UPF3A-201ENST00000351487 TMEM78Q5T7P6 136 aa16.96■□□□□ 0.31
UPF3A-201ENST00000351487 CCL19Q99731 98 aa16.96■□□□□ 0.31
UPF3A-201ENST00000351487 IGKV3D-20A0A0C4DH25 116 aa16.96■□□□□ 0.3
UPF3A-201ENST00000351487 BRI3O95415 125 aa16.96■□□□□ 0.3
UPF3A-201ENST00000351487 GLMPQ8WWB7 406 aa16.96■□□□□ 0.3
UPF3A-201ENST00000351487 PMCHL2Q9BQD1 86 aa16.96■□□□□ 0.3
UPF3A-201ENST00000351487 NPFFR1Q9GZQ6 430 aa16.96■□□□□ 0.3
UPF3A-201ENST00000351487 TP73-AS1Q9UF72 201 aa16.96■□□□□ 0.3
UPF3A-201ENST00000351487 SMKR1H3BMG3 65 aa16.95■□□□□ 0.3
UPF3A-201ENST00000351487 LINC00527Q9UJ94 153 aa16.95■□□□□ 0.3
UPF3A-201ENST00000351487 LINC01546A6NGU7 62 aa16.94■□□□□ 0.3
UPF3A-201ENST00000351487 TCF21O43680 179 aa16.94■□□□□ 0.3
UPF3A-201ENST00000351487 ARL3P36405 182 aa16.94■□□□□ 0.3
UPF3A-201ENST00000351487 C11orf21Q9P2W6 132 aa16.94■□□□□ 0.3
UPF3A-201ENST00000351487 PRSS57Q6UWY2 283 aa16.93■□□□□ 0.3
UPF3A-201ENST00000351487 H3BUA1 57 aa16.93■□□□□ 0.3
UPF3A-201ENST00000351487 LGALS9BQ3B8N2 356 aa16.93■□□□□ 0.3
UPF3A-201ENST00000351487 LGALS9CQ6DKI2 356 aa16.93■□□□□ 0.3
UPF3A-201ENST00000351487 C9orf139Q6ZV77 190 aa16.93■□□□□ 0.3
UPF3A-201ENST00000351487 OR8A1Q8NGG7 326 aa16.93■□□□□ 0.3
UPF3A-201ENST00000351487 ORAOV1Q8WV07 137 aa16.93■□□□□ 0.3
UPF3A-201ENST00000351487 DPF1Q92782 380 aa16.93■□□□□ 0.3
UPF3A-201ENST00000351487 IGHV4-38-2P0DP08 117 aa16.92■□□□□ 0.3
UPF3A-201ENST00000351487 MAP1LC3AQ9H492 121 aa16.92■□□□□ 0.3
UPF3A-201ENST00000351487 SVEP1Q4LDE5 3571 aa16.92■□□□□ 0.3
UPF3A-201ENST00000351487 NDUFA4O00483 81 aa16.92■□□□□ 0.3
UPF3A-201ENST00000351487 IGHG2P01859 326 aa16.92■□□□□ 0.3
UPF3A-201ENST00000351487 PPIFP30405 207 aaKnown RBP16.92■□□□□ 0.3
UPF3A-201ENST00000351487 CLEC2AQ6UVW9 174 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 82.7 ms