RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 SYNJ2BPP57105 145 aa13.98□□□□□ -0.17
USP39-201ENST00000323701 WIPF2Q8TF74 440 aaPredicted RBP13.98□□□□□ -0.17
USP39-201ENST00000323701 SMPXQ9UHP9 88 aa13.98□□□□□ -0.17
USP39-201ENST00000323701 HOXD3P31249 432 aaPredicted RBP13.98□□□□□ -0.17
USP39-201ENST00000323701 CSN1S1P47710 185 aa13.98□□□□□ -0.17
USP39-201ENST00000323701 ERCC8Q13216 396 aa13.98□□□□□ -0.17
USP39-201ENST00000323701 ZNF124Q15973 351 aa13.98□□□□□ -0.17
USP39-201ENST00000323701 ACTL10Q5JWF8 245 aa13.98□□□□□ -0.17
USP39-201ENST00000323701 C11orf44Q8N8P7 122 aa13.98□□□□□ -0.17
USP39-201ENST00000323701 C20orf173Q96LM9 149 aa13.98□□□□□ -0.17
USP39-201ENST00000323701 PACRGQ96M98 296 aaPredicted RBP13.98□□□□□ -0.17
USP39-201ENST00000323701 TRBV6-1A0A0K0K1D8 114 aa13.97□□□□□ -0.17
USP39-201ENST00000323701 C19orf71A6NCJ1 209 aa13.97□□□□□ -0.17
USP39-201ENST00000323701 TYMSP04818 313 aa13.97□□□□□ -0.17
USP39-201ENST00000323701 KCNIP4Q6PIL6 250 aa13.97□□□□□ -0.17
USP39-201ENST00000323701 FAM231DQ6ZW35 169 aa13.97□□□□□ -0.17
USP39-201ENST00000323701 SMIM12Q96EX1 92 aa13.97□□□□□ -0.17
USP39-201ENST00000323701 C2orf88Q9BSF0 95 aa13.97□□□□□ -0.17
USP39-201ENST00000323701 CRIP1P50238 77 aa13.96□□□□□ -0.17
USP39-201ENST00000323701 SRSF2Q01130 221 aaKnown RBP13.96□□□□□ -0.17
USP39-201ENST00000323701 SLC50A1Q9BRV3 221 aa13.96□□□□□ -0.17
USP39-201ENST00000323701 PRO1933Q9H354 126 aa13.96□□□□□ -0.17
USP39-201ENST00000323701 INAFM1C9JVW0 142 aa13.96□□□□□ -0.18
USP39-201ENST00000323701 K7EMT4 169 aa13.96□□□□□ -0.18
USP39-201ENST00000323701 K7EQM0 130 aa13.96□□□□□ -0.18
USP39-201ENST00000323701 SOCS3O14543 225 aa13.96□□□□□ -0.18
USP39-201ENST00000323701 SPINK4O60575 86 aa13.96□□□□□ -0.18
USP39-201ENST00000323701 HILS1P60008 231 aa13.96□□□□□ -0.18
USP39-201ENST00000323701 DEFB1P60022 68 aa13.96□□□□□ -0.18
USP39-201ENST00000323701 XKRY2A2RUG3 117 aa13.95□□□□□ -0.18
USP39-201ENST00000323701 SLURP1P55000 103 aa13.95□□□□□ -0.18
USP39-201ENST00000323701 RPL11P62913 178 aaKnown RBP13.95□□□□□ -0.18
USP39-201ENST00000323701 KHDC1LQ5JSQ8 128 aa13.95□□□□□ -0.18
USP39-201ENST00000323701 AMBPP02760 352 aa13.95□□□□□ -0.18
USP39-201ENST00000323701 LINC01006Q8NI28 216 aa13.95□□□□□ -0.18
USP39-201ENST00000323701 SMIM27A0A1W2PRY6 76 aa13.94□□□□□ -0.18
USP39-201ENST00000323701 A0A1W2PS18 150 aa13.94□□□□□ -0.18
USP39-201ENST00000323701 ZNF705DP0CH99 300 aaPredicted RBP13.94□□□□□ -0.18
USP39-201ENST00000323701 ZNF705BP0CI00 300 aaPredicted RBP13.94□□□□□ -0.18
USP39-201ENST00000323701 COA6Q5JTJ3 125 aaKnown RBP13.94□□□□□ -0.18
USP39-201ENST00000323701 C16orf92Q96LL3 132 aa13.94□□□□□ -0.18
USP39-201ENST00000323701 ZFP30Q9Y2G7 519 aa13.94□□□□□ -0.18
USP39-201ENST00000323701 JOSD1Q15040 202 aaPredicted RBP13.93□□□□□ -0.18
USP39-201ENST00000323701 ZNF418Q8TF45 676 aaPredicted RBP13.93□□□□□ -0.18
USP39-201ENST00000323701 GRAMD2BQ96HH9 432 aa13.93□□□□□ -0.18
USP39-201ENST00000323701 ADAMTSL5Q6ZMM2 481 aa13.93□□□□□ -0.18
USP39-201ENST00000323701 GBGT1Q8N5D6 347 aa13.93□□□□□ -0.18
USP39-201ENST00000323701 PRR25Q96S07 402 aa13.93□□□□□ -0.18
USP39-201ENST00000323701 NRN1Q9NPD7 142 aa13.93□□□□□ -0.18
USP39-201ENST00000323701 ZNF492Q9P255 531 aa13.93□□□□□ -0.18
USP39-201ENST00000323701 UFC1Q9Y3C8 167 aa13.93□□□□□ -0.18
USP39-201ENST00000323701 CD28P10747 220 aa13.92□□□□□ -0.18
USP39-201ENST00000323701 RAB4BP61018 213 aa13.92□□□□□ -0.18
USP39-201ENST00000323701 RPL19P84098 196 aaKnown RBP13.92□□□□□ -0.18
USP39-201ENST00000323701 KLF5Q13887 457 aaPredicted RBP13.92□□□□□ -0.18
USP39-201ENST00000323701 ARL6IP6Q8N6S5 226 aa13.92□□□□□ -0.18
USP39-201ENST00000323701 OR11H1Q8NG94 326 aa13.92□□□□□ -0.18
USP39-201ENST00000323701 WNK1Q9H4A3 2382 aa13.92□□□□□ -0.18
USP39-201ENST00000323701 A8MWP6 167 aa13.92□□□□□ -0.18
USP39-201ENST00000323701 ZNF80P51504 273 aaPredicted RBP13.92□□□□□ -0.18
USP39-201ENST00000323701 TCF24Q7RTU0 167 aa13.92□□□□□ -0.18
USP39-201ENST00000323701 C4orf3Q8WVX3 66 aa13.92□□□□□ -0.18
USP39-201ENST00000323701 AGPAT4-IT1Q9H0P7 198 aa13.92□□□□□ -0.18
USP39-201ENST00000323701 C2CD3Q4AC94 2353 aa13.91□□□□□ -0.18
USP39-201ENST00000323701 SERTM2A0A1B0GWG4 89 aa13.91□□□□□ -0.18
USP39-201ENST00000323701 P01737 135 aa13.91□□□□□ -0.18
USP39-201ENST00000323701 GZMBP10144 247 aa13.91□□□□□ -0.18
USP39-201ENST00000323701 KLHL30-AS1Q8NEE0 82 aa13.91□□□□□ -0.18
USP39-201ENST00000323701 GTSF1Q8WW33 167 aa13.91□□□□□ -0.18
USP39-201ENST00000323701 NEU1Q99519 415 aa13.91□□□□□ -0.18
USP39-201ENST00000323701 RPP21Q9H633 154 aaKnown RBP13.91□□□□□ -0.18
USP39-201ENST00000323701 BAHCC1Q9P281 2608 aa13.91□□□□□ -0.18
USP39-201ENST00000323701 SORL1Q92673 2214 aa13.91□□□□□ -0.18
USP39-201ENST00000323701 NPIPB6E9PJ23 425 aa13.9□□□□□ -0.18
USP39-201ENST00000323701 SCGB2A2Q13296 93 aa13.9□□□□□ -0.18
USP39-201ENST00000323701 F8P00451 2351 aa13.9□□□□□ -0.18
USP39-201ENST00000323701 LGALS9O00182 355 aa13.9□□□□□ -0.18
USP39-201ENST00000323701 CBLN1P23435 193 aa13.9□□□□□ -0.18
USP39-201ENST00000323701 NUP35Q8NFH5 326 aa13.9□□□□□ -0.18
USP39-201ENST00000323701 BTF3L4Q96K17 158 aa13.9□□□□□ -0.18
USP39-201ENST00000323701 A0A1W2PRX2 142 aa13.89□□□□□ -0.19
USP39-201ENST00000323701 C2orf70A6NJV1 201 aa13.89□□□□□ -0.19
USP39-201ENST00000323701 HAX1O00165 279 aa13.89□□□□□ -0.19
USP39-201ENST00000323701 MRPL54Q6P161 138 aaKnown RBP13.89□□□□□ -0.19
USP39-201ENST00000323701 DCANP1Q8TF63 244 aa13.89□□□□□ -0.19
USP39-201ENST00000323701 TSKUQ8WUA8 353 aa13.89□□□□□ -0.19
USP39-201ENST00000323701 C16orf95Q9H693 158 aa13.89□□□□□ -0.19
USP39-201ENST00000323701 A0A1B0GUS0 222 aa13.89□□□□□ -0.19
USP39-201ENST00000323701 HIGD1CA8MV81 97 aa13.89□□□□□ -0.19
USP39-201ENST00000323701 F6UB75 175 aa13.89□□□□□ -0.19
USP39-201ENST00000323701 DAZAP1Q96EP5 407 aaKnown RBP13.89□□□□□ -0.19
USP39-201ENST00000323701 NDUFAF3Q9BU61 184 aa13.89□□□□□ -0.19
USP39-201ENST00000323701 TRAPPC1Q9Y5R8 145 aa13.89□□□□□ -0.19
USP39-201ENST00000323701 LINC01619G3V211 115 aa13.88□□□□□ -0.19
USP39-201ENST00000323701 WFDC3Q8IUB2 231 aa13.88□□□□□ -0.19
USP39-201ENST00000323701 ZNF738Q8NE65 137 aa13.88□□□□□ -0.19
USP39-201ENST00000323701 OR1N2Q8NGR9 330 aa13.88□□□□□ -0.19
USP39-201ENST00000323701 MRPL53Q96EL3 112 aaKnown RBP13.88□□□□□ -0.19
USP39-201ENST00000323701 TENM1Q9UKZ4 2725 aa13.88□□□□□ -0.19
USP39-201ENST00000323701 PRR31Q5SQ13 230 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms