RNA–Protein interactions for RNA: ENST00000263121.11

SMARCB1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SMARCB1, Length 1,690 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-201ENST00000263121 PFN1P07737 140 aaKnown RBP17.2■□□□□ 0.34
SMARCB1-201ENST00000263121 PRR27Q6MZM9 219 aa17.2■□□□□ 0.34
SMARCB1-201ENST00000263121 C9orf47Q6ZRZ4 202 aa17.2■□□□□ 0.34
SMARCB1-201ENST00000263121 WFDC3Q8IUB2 231 aa17.2■□□□□ 0.34
SMARCB1-201ENST00000263121 Q8TAT8 98 aa17.2■□□□□ 0.34
SMARCB1-201ENST00000263121 ZC2HC1AQ96GY0 325 aa17.2■□□□□ 0.34
SMARCB1-201ENST00000263121 PRR25Q96S07 402 aa17.2■□□□□ 0.34
SMARCB1-201ENST00000263121 SIGLEC8Q9NYZ4 499 aa17.2■□□□□ 0.34
SMARCB1-201ENST00000263121 SETD2Q9BYW2 2564 aaPredicted RBP17.19■□□□□ 0.34
SMARCB1-201ENST00000263121 SAPCD1Q5SSQ6 148 aa17.19■□□□□ 0.34
SMARCB1-201ENST00000263121 LINC00322Q6ZN03 302 aaPredicted RBP17.19■□□□□ 0.34
SMARCB1-201ENST00000263121 IMMP2LQ96T52 175 aa17.19■□□□□ 0.34
SMARCB1-201ENST00000263121 AGPAT4-IT1Q9H0P7 198 aa17.19■□□□□ 0.34
SMARCB1-201ENST00000263121 C19orf71A6NCJ1 209 aa17.18■□□□□ 0.34
SMARCB1-201ENST00000263121 TFPI2P48307 235 aa17.18■□□□□ 0.34
SMARCB1-201ENST00000263121 DEFB114Q30KQ6 69 aa17.18■□□□□ 0.34
SMARCB1-201ENST00000263121 NUDT10Q8NFP7 164 aa17.18■□□□□ 0.34
SMARCB1-201ENST00000263121 DYNLRB2Q8TF09 96 aa17.18■□□□□ 0.34
SMARCB1-201ENST00000263121 NUDT11Q96G61 164 aa17.18■□□□□ 0.34
SMARCB1-201ENST00000263121 C8orf49Q96NF6 230 aa17.18■□□□□ 0.34
SMARCB1-201ENST00000263121 GPR61Q9BZJ8 451 aa17.17■□□□□ 0.34
SMARCB1-201ENST00000263121 PPP1R14DQ9NXH3 145 aa17.17■□□□□ 0.34
SMARCB1-201ENST00000263121 TRAV2A0A0B4J234 112 aa17.16■□□□□ 0.34
SMARCB1-201ENST00000263121 PAFAH1B2P68402 229 aa17.16■□□□□ 0.34
SMARCB1-201ENST00000263121 TMEM61Q8N0U2 210 aa17.16■□□□□ 0.34
SMARCB1-201ENST00000263121 NPIPB6E9PJ23 425 aa17.16■□□□□ 0.34
SMARCB1-201ENST00000263121 ZNF138P52744 262 aa17.16■□□□□ 0.34
SMARCB1-201ENST00000263121 TMEM78Q5T7P6 136 aa17.16■□□□□ 0.34
SMARCB1-201ENST00000263121 IL36BQ9NZH7 164 aa17.16■□□□□ 0.34
SMARCB1-201ENST00000263121 CXCL1P09341 107 aa17.15■□□□□ 0.34
SMARCB1-201ENST00000263121 S100PP25815 95 aa17.15■□□□□ 0.34
SMARCB1-201ENST00000263121 DEFB1P60022 68 aa17.15■□□□□ 0.34
SMARCB1-201ENST00000263121 SNRPD3P62318 126 aaKnown RBP17.15■□□□□ 0.34
SMARCB1-201ENST00000263121 RBPMS2Q6ZRY4 209 aaKnown RBP17.15■□□□□ 0.34
SMARCB1-201ENST00000263121 CITED1Q99966 193 aa17.15■□□□□ 0.34
SMARCB1-201ENST00000263121 NDFIP1Q9BT67 221 aa17.15■□□□□ 0.34
SMARCB1-201ENST00000263121 TGIF2-C20orf24A0A0A6YYL0 155 aa17.14■□□□□ 0.33
SMARCB1-201ENST00000263121 ZNF705GA8MUZ8 300 aaPredicted RBP17.14■□□□□ 0.33
SMARCB1-201ENST00000263121 GATCO43716 136 aaKnown RBP17.14■□□□□ 0.33
SMARCB1-201ENST00000263121 ZNF688P0C7X2 276 aa17.14■□□□□ 0.33
SMARCB1-201ENST00000263121 ZNF705DP0CH99 300 aaPredicted RBP17.14■□□□□ 0.33
SMARCB1-201ENST00000263121 ZNF705BP0CI00 300 aaPredicted RBP17.14■□□□□ 0.33
SMARCB1-201ENST00000263121 CRIP1P50238 77 aa17.14■□□□□ 0.33
SMARCB1-201ENST00000263121 OR8A1Q8NGG7 326 aa17.14■□□□□ 0.33
SMARCB1-201ENST00000263121 OR10J6PQ8NGY7 276 aa17.14■□□□□ 0.33
SMARCB1-201ENST00000263121 TRBV24-1A0A075B6N3 115 aa17.13■□□□□ 0.33
SMARCB1-201ENST00000263121 CD300EQ496F6 205 aaPredicted RBP17.13■□□□□ 0.33
SMARCB1-201ENST00000263121 KCNIP4Q6PIL6 250 aa17.13■□□□□ 0.33
SMARCB1-201ENST00000263121 LINC00477Q96M19 166 aa17.13■□□□□ 0.33
SMARCB1-201ENST00000263121 PYGO2Q9BRQ0 406 aa17.13■□□□□ 0.33
SMARCB1-201ENST00000263121 NIPBLQ6KC79 2804 aaeCLIP17.13■□□□□ 0.33
SMARCB1-201ENST00000263121 F6UB75 175 aa17.13■□□□□ 0.33
SMARCB1-201ENST00000263121 CT45A10P0DMU9 189 aa17.13■□□□□ 0.33
SMARCB1-201ENST00000263121 PSMG4Q5JS54 123 aa17.13■□□□□ 0.33
SMARCB1-201ENST00000263121 TRAV25A0A0B4J276 109 aa17.12■□□□□ 0.33
SMARCB1-201ENST00000263121 P01737 135 aa17.12■□□□□ 0.33
SMARCB1-201ENST00000263121 FAM3BP58499 235 aaPredicted RBP17.12■□□□□ 0.33
SMARCB1-201ENST00000263121 DAZAP1Q96EP5 407 aaKnown RBP17.12■□□□□ 0.33
SMARCB1-201ENST00000263121 RPP21Q9H633 154 aaKnown RBP17.12■□□□□ 0.33
SMARCB1-201ENST00000263121 LENEPQ9Y5L5 61 aa17.12■□□□□ 0.33
SMARCB1-201ENST00000263121 RAB5AP20339 215 aa17.11■□□□□ 0.33
SMARCB1-201ENST00000263121 HIST1H1AQ02539 215 aaPredicted RBP17.11■□□□□ 0.33
SMARCB1-201ENST00000263121 KRTAP24-1Q3LI83 254 aa17.11■□□□□ 0.33
SMARCB1-201ENST00000263121 SMUG1Q53HV7 270 aa17.11■□□□□ 0.33
SMARCB1-201ENST00000263121 CA1P00915 261 aaPredicted RBP17.1■□□□□ 0.33
SMARCB1-201ENST00000263121 CT83Q5H943 113 aa17.1■□□□□ 0.33
SMARCB1-201ENST00000263121 LINC00482Q8N8I6 264 aa17.1■□□□□ 0.33
SMARCB1-201ENST00000263121 SPAG8Q99932 426 aaPredicted RBP17.1■□□□□ 0.33
SMARCB1-201ENST00000263121 A0A1W2PPQ1 181 aa17.1■□□□□ 0.33
SMARCB1-201ENST00000263121 SMIM27A0A1W2PRY6 76 aa17.1■□□□□ 0.33
SMARCB1-201ENST00000263121 PF4P02776 101 aa17.1■□□□□ 0.33
SMARCB1-201ENST00000263121 ZNF80P51504 273 aaPredicted RBP17.1■□□□□ 0.33
SMARCB1-201ENST00000263121 OR4B1Q8NGF8 309 aa17.1■□□□□ 0.33
SMARCB1-201ENST00000263121 FAM210BQ96KR6 192 aa17.1■□□□□ 0.33
SMARCB1-201ENST00000263121 FAM162BQ5T6X4 162 aa17.09■□□□□ 0.33
SMARCB1-201ENST00000263121 FAM19A4Q96LR4 140 aa17.09■□□□□ 0.33
SMARCB1-201ENST00000263121 TRAV9-1A0A075B6T8 112 aa17.08■□□□□ 0.32
SMARCB1-201ENST00000263121 SH2D1AO60880 128 aa17.08■□□□□ 0.32
SMARCB1-201ENST00000263121 A0A0J9YX75 114 aa17.07■□□□□ 0.32
SMARCB1-201ENST00000263121 IZUMO1RA6ND01 250 aa17.07■□□□□ 0.32
SMARCB1-201ENST00000263121 SAP30O75446 220 aa17.07■□□□□ 0.32
SMARCB1-201ENST00000263121 GDF5OSQ5U4N7 250 aa17.07■□□□□ 0.32
SMARCB1-201ENST00000263121 TSKUQ8WUA8 353 aa17.07■□□□□ 0.32
SMARCB1-201ENST00000263121 ZNF256Q9Y2P7 627 aaPredicted RBP17.07■□□□□ 0.32
SMARCB1-201ENST00000263121 TRBV7-9A0A0J9YWB2 115 aa17.07■□□□□ 0.32
SMARCB1-201ENST00000263121 OR4C46A6NHA9 309 aa17.07■□□□□ 0.32
SMARCB1-201ENST00000263121 PRIMA1Q86XR5 153 aa17.07■□□□□ 0.32
SMARCB1-201ENST00000263121 TMA7Q9Y2S6 64 aaKnown RBP17.07■□□□□ 0.32
SMARCB1-201ENST00000263121 IGLV1-51P01701 117 aa17.06■□□□□ 0.32
SMARCB1-201ENST00000263121 JMJD1CQ15652 2540 aa17.06■□□□□ 0.32
SMARCB1-201ENST00000263121 A8MWL6 223 aa17.05■□□□□ 0.32
SMARCB1-201ENST00000263121 TCL1AP56279 114 aa17.05■□□□□ 0.32
SMARCB1-201ENST00000263121 FOXI2Q6ZQN5 318 aa17.05■□□□□ 0.32
SMARCB1-201ENST00000263121 ZFAND2AQ8N6M9 145 aa17.05■□□□□ 0.32
SMARCB1-201ENST00000263121 OR2D3Q8NGH3 330 aa17.05■□□□□ 0.32
SMARCB1-201ENST00000263121 BTF3L4Q96K17 158 aa17.05■□□□□ 0.32
SMARCB1-201ENST00000263121 SAV1Q9H4B6 383 aaPredicted RBP17.05■□□□□ 0.32
SMARCB1-201ENST00000263121 WNK1Q9H4A3 2382 aa17.05■□□□□ 0.32
SMARCB1-201ENST00000263121 TEP1Q99973 2627 aaKnown RBP17.04■□□□□ 0.32
SMARCB1-201ENST00000263121 TYMSP04818 313 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms