RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 GPHB5Q86YW7 130 aa11.39□□□□□ -0.59
CCDC47-201ENST00000225726 A0A1W2PS18 150 aa11.38□□□□□ -0.59
CCDC47-201ENST00000225726 LGALS1P09382 135 aaKnown RBP11.38□□□□□ -0.59
CCDC47-201ENST00000225726 PRR27Q6MZM9 219 aa11.38□□□□□ -0.59
CCDC47-201ENST00000225726 NUDT10Q8NFP7 164 aa11.38□□□□□ -0.59
CCDC47-201ENST00000225726 NUDT11Q96G61 164 aa11.38□□□□□ -0.59
CCDC47-201ENST00000225726 FBLL1A6NHQ2 334 aaKnown RBP11.37□□□□□ -0.59
CCDC47-201ENST00000225726 K7EMT4 169 aa11.37□□□□□ -0.59
CCDC47-201ENST00000225726 UBE2E2Q96LR5 201 aa11.37□□□□□ -0.59
CCDC47-201ENST00000225726 FLNAP21333 2647 aaKnown RBP11.37□□□□□ -0.59
CCDC47-201ENST00000225726 AKAP9Q99996 3911 aa11.37□□□□□ -0.59
CCDC47-201ENST00000225726 CHEK1O14757 476 aa11.37□□□□□ -0.59
CCDC47-201ENST00000225726 DAZ1Q9NQZ3 744 aaKnown RBP11.37□□□□□ -0.59
CCDC47-201ENST00000225726 CCDC168Q8NDH2 2452 aa11.37□□□□□ -0.59
CCDC47-201ENST00000225726 IGHV7-4-1A0A0J9YVY3 117 aa11.37□□□□□ -0.59
CCDC47-201ENST00000225726 SMIM27A0A1W2PRY6 76 aa11.36□□□□□ -0.59
CCDC47-201ENST00000225726 HLA-DMBP28068 263 aa11.36□□□□□ -0.59
CCDC47-201ENST00000225726 MRPL53Q96EL3 112 aaKnown RBP11.36□□□□□ -0.59
CCDC47-201ENST00000225726 ZC2HC1AQ96GY0 325 aa11.36□□□□□ -0.59
CCDC47-201ENST00000225726 ITPR2Q14571 2701 aa11.36□□□□□ -0.59
CCDC47-201ENST00000225726 FAM181BA6NEQ2 426 aa11.36□□□□□ -0.59
CCDC47-201ENST00000225726 IGFL4Q6B9Z1 124 aa11.36□□□□□ -0.59
CCDC47-201ENST00000225726 LCN12Q6JVE5 192 aa11.36□□□□□ -0.59
CCDC47-201ENST00000225726 C8orf86Q6ZUL3 223 aa11.36□□□□□ -0.59
CCDC47-201ENST00000225726 OR4C5Q8NGB2 326 aa11.36□□□□□ -0.59
CCDC47-201ENST00000225726 ESM1Q9NQ30 184 aa11.36□□□□□ -0.59
CCDC47-201ENST00000225726 UFC1Q9Y3C8 167 aa11.36□□□□□ -0.59
CCDC47-201ENST00000225726 MXRA5Q9NR99 2828 aa11.36□□□□□ -0.59
CCDC47-201ENST00000225726 C19orf71A6NCJ1 209 aa11.36□□□□□ -0.59
CCDC47-201ENST00000225726 Q6ZSV7 163 aa11.36□□□□□ -0.59
CCDC47-201ENST00000225726 CLEC5AQ9NY25 188 aa11.36□□□□□ -0.59
CCDC47-201ENST00000225726 IGKV2-40A0A087WW87 121 aaPredicted RBP11.35□□□□□ -0.59
CCDC47-201ENST00000225726 CCL25O15444 150 aa11.35□□□□□ -0.59
CCDC47-201ENST00000225726 IGKV2D-40P01614 121 aaPredicted RBP11.35□□□□□ -0.59
CCDC47-201ENST00000225726 TRAV8-2A0A0B4J237 113 aa11.35□□□□□ -0.59
CCDC47-201ENST00000225726 JOSD1Q15040 202 aaPredicted RBP11.35□□□□□ -0.59
CCDC47-201ENST00000225726 TM4SF20Q53R12 229 aa11.35□□□□□ -0.59
CCDC47-201ENST00000225726 GBGT1Q8N5D6 347 aa11.35□□□□□ -0.59
CCDC47-201ENST00000225726 KLHDC1Q8N7A1 406 aa11.35□□□□□ -0.59
CCDC47-201ENST00000225726 LINC00322Q6ZN03 302 aaPredicted RBP11.34□□□□□ -0.59
CCDC47-201ENST00000225726 DAZAP1Q96EP5 407 aaKnown RBP11.34□□□□□ -0.59
CCDC47-201ENST00000225726 RPP21Q9H633 154 aaKnown RBP11.34□□□□□ -0.59
CCDC47-201ENST00000225726 SMPXQ9UHP9 88 aa11.34□□□□□ -0.59
CCDC47-201ENST00000225726 ALKBH7Q9BT30 221 aaPredicted RBP11.34□□□□□ -0.59
CCDC47-201ENST00000225726 RBAKDNA6NC62 111 aa11.34□□□□□ -0.59
CCDC47-201ENST00000225726 P01737 135 aa11.34□□□□□ -0.59
CCDC47-201ENST00000225726 PRB4P10163 310 aaPredicted RBP11.34□□□□□ -0.59
CCDC47-201ENST00000225726 CT83Q5H943 113 aa11.34□□□□□ -0.59
CCDC47-201ENST00000225726 ACTL10Q5JWF8 245 aa11.34□□□□□ -0.59
CCDC47-201ENST00000225726 RNF182Q8N6D2 247 aa11.34□□□□□ -0.59
CCDC47-201ENST00000225726 RHPN1-AS1Q9BWJ2 59 aa11.34□□□□□ -0.59
CCDC47-201ENST00000225726 HINT1P49773 126 aaPredicted RBP11.33□□□□□ -0.6
CCDC47-201ENST00000225726 RPL19P84098 196 aaKnown RBP11.33□□□□□ -0.6
CCDC47-201ENST00000225726 VAMP3Q15836 100 aa11.33□□□□□ -0.6
CCDC47-201ENST00000225726 Q71RC1 249 aaPredicted RBP11.33□□□□□ -0.6
CCDC47-201ENST00000225726 OR4B1Q8NGF8 309 aa11.33□□□□□ -0.6
CCDC47-201ENST00000225726 TSKUQ8WUA8 353 aa11.33□□□□□ -0.6
CCDC47-201ENST00000225726 CA1P00915 261 aaPredicted RBP11.33□□□□□ -0.6
CCDC47-201ENST00000225726 BMI1P35226 326 aa11.33□□□□□ -0.6
CCDC47-201ENST00000225726 TCL1AP56279 114 aa11.33□□□□□ -0.6
CCDC47-201ENST00000225726 C16orf92Q96LL3 132 aa11.33□□□□□ -0.6
CCDC47-201ENST00000225726 IGHV4OR15-8A0A075B7B6 117 aa11.32□□□□□ -0.6
CCDC47-201ENST00000225726 A0A087WW49 117 aa11.32□□□□□ -0.6
CCDC47-201ENST00000225726 IZUMO1RA6ND01 250 aa11.32□□□□□ -0.6
CCDC47-201ENST00000225726 NPIPB6E9PJ23 425 aa11.32□□□□□ -0.6
CCDC47-201ENST00000225726 RNASE1P07998 156 aaKnown RBP11.32□□□□□ -0.6
CCDC47-201ENST00000225726 COX8CQ7Z4L0 72 aa11.32□□□□□ -0.6
CCDC47-201ENST00000225726 VGLL1Q99990 258 aa11.32□□□□□ -0.6
CCDC47-201ENST00000225726 LGALS9O00182 355 aa11.32□□□□□ -0.6
CCDC47-201ENST00000225726 SRD5A1P18405 259 aa11.32□□□□□ -0.6
CCDC47-201ENST00000225726 PRAC2D3DTV9 90 aa11.31□□□□□ -0.6
CCDC47-201ENST00000225726 ZNF418Q8TF45 676 aaPredicted RBP11.31□□□□□ -0.6
CCDC47-201ENST00000225726 C8orf49Q96NF6 230 aa11.31□□□□□ -0.6
CCDC47-201ENST00000225726 ASCL2Q99929 193 aa11.31□□□□□ -0.6
CCDC47-201ENST00000225726 NAT8BQ9UHF3 227 aa11.31□□□□□ -0.6
CCDC47-201ENST00000225726 SOCS3O14543 225 aa11.31□□□□□ -0.6
CCDC47-201ENST00000225726 ATOH7Q8N100 152 aa11.31□□□□□ -0.6
CCDC47-201ENST00000225726 PRR25Q96S07 402 aa11.31□□□□□ -0.6
CCDC47-201ENST00000225726 SMR3AQ99954 134 aa11.31□□□□□ -0.6
CCDC47-201ENST00000225726 NRN1Q9NPD7 142 aa11.31□□□□□ -0.6
CCDC47-201ENST00000225726 TRAPPC1Q9Y5R8 145 aa11.31□□□□□ -0.6
CCDC47-201ENST00000225726 A8MWL6 223 aa11.3□□□□□ -0.6
CCDC47-201ENST00000225726 LY6G6DO95868 133 aa11.3□□□□□ -0.6
CCDC47-201ENST00000225726 CT45A10P0DMU9 189 aa11.3□□□□□ -0.6
CCDC47-201ENST00000225726 FASNP49327 2511 aaKnown RBP11.3□□□□□ -0.6
CCDC47-201ENST00000225726 TMEM238C9JI98 176 aa11.3□□□□□ -0.6
CCDC47-201ENST00000225726 LINC00614P0C842 121 aa11.3□□□□□ -0.6
CCDC47-201ENST00000225726 C4orf3Q8WVX3 66 aa11.3□□□□□ -0.6
CCDC47-201ENST00000225726 TMEM213A2RRL7 107 aa11.3□□□□□ -0.6
CCDC47-201ENST00000225726 HOXD3P31249 432 aaPredicted RBP11.3□□□□□ -0.6
CCDC47-201ENST00000225726 COX19Q49B96 90 aa11.3□□□□□ -0.6
CCDC47-201ENST00000225726 SMIM15Q7Z3B0 74 aa11.3□□□□□ -0.6
CCDC47-201ENST00000225726 NDFIP1Q9BT67 221 aa11.3□□□□□ -0.6
CCDC47-201ENST00000225726 GFRA4Q9GZZ7 299 aa11.3□□□□□ -0.6
CCDC47-201ENST00000225726 TCTEX1D4Q5JR98 221 aa11.29□□□□□ -0.6
CCDC47-201ENST00000225726 C16orf95Q9H693 158 aa11.29□□□□□ -0.6
CCDC47-201ENST00000225726 ERCC8Q13216 396 aa11.29□□□□□ -0.6
CCDC47-201ENST00000225726 EDN2P20800 178 aa11.29□□□□□ -0.6
CCDC47-201ENST00000225726 CRIP1P50238 77 aa11.29□□□□□ -0.6
CCDC47-201ENST00000225726 SYNJ2BPP57105 145 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms