RNA–Protein interactions for RNA: ENST00000221232.9

CNOT3-201, Transcript of CCR4-NOT transcription complex subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CNOT3, Length 2,852 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT3-201ENST00000221232 DTX2Q86UW9 622 aa11.34□□□□□ -0.59
CNOT3-201ENST00000221232 PRELID3AQ96N28 172 aa11.34□□□□□ -0.59
CNOT3-201ENST00000221232 MINOS1-NBL1R4GNA1 71 aa11.34□□□□□ -0.59
CNOT3-201ENST00000221232 HSBP1L1C9JCN9 74 aa11.34□□□□□ -0.59
CNOT3-201ENST00000221232 J3KRW8 73 aa11.34□□□□□ -0.59
CNOT3-201ENST00000221232 BRD3OSQ6XYD6 125 aa11.34□□□□□ -0.59
CNOT3-201ENST00000221232 AJUBAQ96IF1 538 aa11.34□□□□□ -0.59
CNOT3-201ENST00000221232 SIGLEC8Q9NYZ4 499 aa11.34□□□□□ -0.59
CNOT3-201ENST00000221232 IGHV2-70DA0A0C4DH43 119 aa11.33□□□□□ -0.6
CNOT3-201ENST00000221232 Q6ZQT7 251 aa11.33□□□□□ -0.6
CNOT3-201ENST00000221232 MRPL52Q86TS9 123 aaKnown RBP11.33□□□□□ -0.6
CNOT3-201ENST00000221232 HSPB8Q9UJY1 196 aa11.33□□□□□ -0.6
CNOT3-201ENST00000221232 NHLH1Q02575 133 aa11.33□□□□□ -0.6
CNOT3-201ENST00000221232 MRPL51Q4U2R6 128 aaKnown RBP11.33□□□□□ -0.6
CNOT3-201ENST00000221232 C1orf122Q6ZSJ8 110 aa11.33□□□□□ -0.6
CNOT3-201ENST00000221232 NUDT3O95989 172 aa11.32□□□□□ -0.6
CNOT3-201ENST00000221232 CKS2P33552 79 aa11.32□□□□□ -0.6
CNOT3-201ENST00000221232 EBI3Q14213 229 aa11.32□□□□□ -0.6
CNOT3-201ENST00000221232 FER1L6-AS1Q8NA97 138 aa11.32□□□□□ -0.6
CNOT3-201ENST00000221232 CRXO43186 299 aaPredicted RBP11.32□□□□□ -0.6
CNOT3-201ENST00000221232 UBE2E1P51965 193 aa11.32□□□□□ -0.6
CNOT3-201ENST00000221232 FAM104BQ5XKR9 115 aa11.32□□□□□ -0.6
CNOT3-201ENST00000221232 IL17RELQ6ZVW7 336 aa11.32□□□□□ -0.6
CNOT3-201ENST00000221232 ZNF747Q9BV97 191 aa11.32□□□□□ -0.6
CNOT3-201ENST00000221232 MRPS16Q9Y3D3 137 aaKnown RBP11.32□□□□□ -0.6
CNOT3-201ENST00000221232 ITPR1Q14643 2758 aa11.31□□□□□ -0.6
CNOT3-201ENST00000221232 A0A087X0K7 114 aa11.31□□□□□ -0.6
CNOT3-201ENST00000221232 EFNA4P52798 201 aa11.31□□□□□ -0.6
CNOT3-201ENST00000221232 LMO4P61968 165 aa11.31□□□□□ -0.6
CNOT3-201ENST00000221232 ZNF502Q8TBZ5 544 aa11.31□□□□□ -0.6
CNOT3-201ENST00000221232 GNLYP22749 145 aa11.31□□□□□ -0.6
CNOT3-201ENST00000221232 EVI2AP22794 236 aa11.31□□□□□ -0.6
CNOT3-201ENST00000221232 OR10AG1Q8NH19 301 aa11.31□□□□□ -0.6
CNOT3-201ENST00000221232 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.31□□□□□ -0.68e-7■■■□□ 14.8
CNOT3-201ENST00000221232 CBY3A6NI87 242 aa11.3□□□□□ -0.6
CNOT3-201ENST00000221232 NPYP01303 97 aa11.3□□□□□ -0.6
CNOT3-201ENST00000221232 ORMDL3Q8N138 153 aa11.3□□□□□ -0.6
CNOT3-201ENST00000221232 CCDC140Q96MF4 163 aa11.3□□□□□ -0.6
CNOT3-201ENST00000221232 SPRY2O43597 315 aa11.3□□□□□ -0.6
CNOT3-201ENST00000221232 BUB3O43684 328 aa11.3□□□□□ -0.6
CNOT3-201ENST00000221232 GOSR1O95249 250 aa11.3□□□□□ -0.6
CNOT3-201ENST00000221232 GATA1P15976 413 aaPredicted RBP11.3□□□□□ -0.6
CNOT3-201ENST00000221232 SLC25A34Q6PIV7 304 aa11.3□□□□□ -0.6
CNOT3-201ENST00000221232 ZNF48Q96MX3 618 aaPredicted RBP11.3□□□□□ -0.6
CNOT3-201ENST00000221232 C18orf15Q96N68 181 aa11.3□□□□□ -0.6
CNOT3-201ENST00000221232 IGKV3-7A0A075B6H7 116 aa11.3□□□□□ -0.6
CNOT3-201ENST00000221232 OOSP1A8MZH6 123 aa11.3□□□□□ -0.6
CNOT3-201ENST00000221232 NPFFO15130 113 aa11.3□□□□□ -0.6
CNOT3-201ENST00000221232 SCGB2A1O75556 95 aa11.3□□□□□ -0.6
CNOT3-201ENST00000221232 LY6EQ16553 131 aa11.3□□□□□ -0.6
CNOT3-201ENST00000221232 PET117Q6UWS5 81 aa11.3□□□□□ -0.6
CNOT3-201ENST00000221232 PRSS57Q6UWY2 283 aa11.3□□□□□ -0.6
CNOT3-201ENST00000221232 ZNF575Q86XF7 245 aa11.3□□□□□ -0.6
CNOT3-201ENST00000221232 FAM110DQ8TAY7 271 aaPredicted RBP11.3□□□□□ -0.6
CNOT3-201ENST00000221232 A0A096LNJ9 63 aa11.29□□□□□ -0.6
CNOT3-201ENST00000221232 CENPVL3A0A0U1RRI6 287 aa11.29□□□□□ -0.6
CNOT3-201ENST00000221232 PTTG1IPP53801 180 aa11.29□□□□□ -0.6
CNOT3-201ENST00000221232 Q6AWC8 147 aa11.29□□□□□ -0.6
CNOT3-201ENST00000221232 CSMD2Q7Z408 3487 aa11.29□□□□□ -0.6
CNOT3-201ENST00000221232 DEFB1P60022 68 aa11.29□□□□□ -0.6
CNOT3-201ENST00000221232 ZFAND3Q9H8U3 227 aa11.29□□□□□ -0.6
CNOT3-201ENST00000221232 ST20Q9HBF5 79 aa11.29□□□□□ -0.6
CNOT3-201ENST00000221232 CLPSL1A2RUU4 121 aa11.28□□□□□ -0.6
CNOT3-201ENST00000221232 BMI1P35226 326 aa11.28□□□□□ -0.6
CNOT3-201ENST00000221232 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.28□□□□□ -0.6
CNOT3-201ENST00000221232 FABP5P3A8MUU1 101 aa11.28□□□□□ -0.6
CNOT3-201ENST00000221232 CCL25O15444 150 aa11.27□□□□□ -0.6
CNOT3-201ENST00000221232 CACNG7P62955 275 aa11.27□□□□□ -0.6
CNOT3-201ENST00000221232 ZNF493Q6ZR52 646 aa11.27□□□□□ -0.6
CNOT3-201ENST00000221232 LCNL1Q6ZST4 164 aa11.27□□□□□ -0.6
CNOT3-201ENST00000221232 AGPAT4-IT1Q9H0P7 198 aa11.27□□□□□ -0.6
CNOT3-201ENST00000221232 CRYBG3Q68DQ2 2970 aa11.27□□□□□ -0.6
CNOT3-201ENST00000221232 A0A1B0GW15 77 aa11.27□□□□□ -0.61
CNOT3-201ENST00000221232 GAGE1Q13065 139 aa11.27□□□□□ -0.61
CNOT3-201ENST00000221232 ITLN2Q8WWU7 325 aaPredicted RBP11.27□□□□□ -0.61
CNOT3-201ENST00000221232 SCRT2Q9NQ03 307 aa11.27□□□□□ -0.61
CNOT3-201ENST00000221232 IGHV3-11P01762 117 aa11.26□□□□□ -0.61
CNOT3-201ENST00000221232 LINC01545Q5VT33 79 aa11.26□□□□□ -0.61
CNOT3-201ENST00000221232 C11orf21Q9P2W6 132 aa11.26□□□□□ -0.61
CNOT3-201ENST00000221232 TRBV12-3P01733 135 aa11.26□□□□□ -0.61
CNOT3-201ENST00000221232 COX11Q9Y6N1 276 aa11.26□□□□□ -0.61
CNOT3-201ENST00000221232 CELSR2Q9HCU4 2923 aa11.26□□□□□ -0.61
CNOT3-201ENST00000221232 TRAV40A0A0B4J280 105 aa11.26□□□□□ -0.61
CNOT3-201ENST00000221232 IGF1P05019 195 aa11.26□□□□□ -0.61
CNOT3-201ENST00000221232 IGHV4-39P01824 125 aa11.25□□□□□ -0.61
CNOT3-201ENST00000221232 ATP5G2Q06055 141 aa11.25□□□□□ -0.61
CNOT3-201ENST00000221232 VAMP3Q15836 100 aa11.25□□□□□ -0.61
CNOT3-201ENST00000221232 ZNF738Q8NE65 137 aa11.25□□□□□ -0.61
CNOT3-201ENST00000221232 WFDC12Q8WWY7 111 aa11.25□□□□□ -0.61
CNOT3-201ENST00000221232 EEF1AKMT3Q96AZ1 226 aa11.25□□□□□ -0.61
CNOT3-201ENST00000221232 METTL26Q96S19 204 aa11.25□□□□□ -0.61
CNOT3-201ENST00000221232 RPL11P62913 178 aaKnown RBP11.25□□□□□ -0.61
CNOT3-201ENST00000221232 C5orf56Q8N8D9 126 aa11.25□□□□□ -0.61
CNOT3-201ENST00000221232 CSPG4Q6UVK1 2322 aa11.24□□□□□ -0.61
CNOT3-201ENST00000221232 TRAV26-2A0A0B4J265 109 aa11.24□□□□□ -0.61
CNOT3-201ENST00000221232 IGKV3D-20A0A0C4DH25 116 aa11.24□□□□□ -0.61
CNOT3-201ENST00000221232 TRGV3P03979 118 aa11.24□□□□□ -0.61
CNOT3-201ENST00000221232 IGLC6P0CF74 106 aa11.24□□□□□ -0.61
CNOT3-201ENST00000221232 GATD1Q8NB37 220 aa11.24□□□□□ -0.61
CNOT3-201ENST00000221232 TRAV8-2A0A0B4J237 113 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 74.1 ms