RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 IDO2Q6ZQW0 420 aa1.15□□□□□ -2.23
CD44-239ENST00000639002 PHF5AQ7RTV0 110 aaKnown RBP1.15□□□□□ -2.23
CD44-239ENST00000639002 DYNAPQ8N1N2 210 aa1.15□□□□□ -2.23
CD44-239ENST00000639002 TEX29Q8N6K0 151 aa1.15□□□□□ -2.23
CD44-239ENST00000639002 PFN4Q8NHR9 129 aa1.15□□□□□ -2.23
CD44-239ENST00000639002 DCANP1Q8TF63 244 aa1.15□□□□□ -2.23
CD44-239ENST00000639002 PRELID3AQ96N28 172 aa1.15□□□□□ -2.23
CD44-239ENST00000639002 C12orf57Q99622 126 aa1.15□□□□□ -2.23
CD44-239ENST00000639002 LINC00470Q9BZP3 86 aa1.15□□□□□ -2.23
CD44-239ENST00000639002 LPAR5Q9H1C0 372 aa1.15□□□□□ -2.23
CD44-239ENST00000639002 BANF2Q9H503 90 aa1.15□□□□□ -2.23
CD44-239ENST00000639002 RERGLQ9H628 205 aa1.15□□□□□ -2.23
CD44-239ENST00000639002 NDUFB11Q9NX14 153 aa1.15□□□□□ -2.23
CD44-239ENST00000639002 HHLA3Q9XRX5 114 aa1.15□□□□□ -2.23
CD44-239ENST00000639002 FAM215AQ9Y5M1 114 aa1.15□□□□□ -2.23
CD44-239ENST00000639002 SOX21Q9Y651 276 aaPredicted RBP1.15□□□□□ -2.23
CD44-239ENST00000639002 RTL9Q8NET4 1388 aa1.15□□□□□ -2.23
CD44-239ENST00000639002 ZNF518AQ6AHZ1 1483 aa1.15□□□□□ -2.23
CD44-239ENST00000639002 COL18A1P39060 1754 aa1.15□□□□□ -2.23
CD44-239ENST00000639002 EML6Q6ZMW3 1958 aa1.15□□□□□ -2.23
CD44-239ENST00000639002 USP9YO00507 2555 aaPredicted RBP1.15□□□□□ -2.23
CD44-239ENST00000639002 SPTBN5Q9NRC6 3674 aaKnown RBP1.15□□□□□ -2.23
CD44-239ENST00000639002 CEP250Q9BV73 2442 aa1.15□□□□□ -2.23
CD44-239ENST00000639002 NCKAP5O14513 1909 aa1.15□□□□□ -2.23
CD44-239ENST00000639002 LCTP09848 1927 aa1.15□□□□□ -2.23
CD44-239ENST00000639002 DSPPQ9NZW4 1301 aa1.15□□□□□ -2.23
CD44-239ENST00000639002 VWDEQ8N2E2 1590 aa1.14□□□□□ -2.23
CD44-239ENST00000639002 UHRF1BP1LA0JNW5 1464 aa1.14□□□□□ -2.23
CD44-239ENST00000639002 TCOF1Q13428 1488 aaKnown RBP1.14□□□□□ -2.23
CD44-239ENST00000639002 IQSEC2Q5JU85 1478 aa1.14□□□□□ -2.23
CD44-239ENST00000639002 MRC2Q9UBG0 1479 aa1.14□□□□□ -2.23
CD44-239ENST00000639002 IBTKQ9P2D0 1353 aaPredicted RBP1.14□□□□□ -2.23
CD44-239ENST00000639002 IGHV3-64A0A075B6Q5 118 aa1.14□□□□□ -2.23
CD44-239ENST00000639002 TRAV16A0A0A6YYK6 109 aaPredicted RBP1.14□□□□□ -2.23
CD44-239ENST00000639002 IGKV1-9A0A0C4DH69 117 aa1.14□□□□□ -2.23
CD44-239ENST00000639002 TRBV27A0A0K0K1C4 114 aa1.14□□□□□ -2.23
CD44-239ENST00000639002 A0A1B0GU33 70 aa1.14□□□□□ -2.23
CD44-239ENST00000639002 MDFIC2A0A1B0GVS7 189 aa1.14□□□□□ -2.23
CD44-239ENST00000639002 A0A1B0GW64 132 aa1.14□□□□□ -2.23
CD44-239ENST00000639002 SDHAF1A6NFY7 115 aa1.14□□□□□ -2.23
CD44-239ENST00000639002 BBIP1A8MTZ0 92 aa1.14□□□□□ -2.23
CD44-239ENST00000639002 ATP6V1G2-DDX39BF2Z307 99 aa1.14□□□□□ -2.23
CD44-239ENST00000639002 G3V3Q6 166 aa1.14□□□□□ -2.23
CD44-239ENST00000639002 UQCRQO14949 82 aa1.14□□□□□ -2.23
CD44-239ENST00000639002 GNG7O60262 68 aa1.14□□□□□ -2.23
CD44-239ENST00000639002 YPEL1O60688 119 aa1.14□□□□□ -2.23
CD44-239ENST00000639002 TIMM17BO60830 172 aa1.14□□□□□ -2.23
CD44-239ENST00000639002 PROSCO94903 275 aa1.14□□□□□ -2.23
CD44-239ENST00000639002 RBP4P02753 201 aa1.14□□□□□ -2.23
CD44-239ENST00000639002 MT-ND4LP03901 98 aa1.14□□□□□ -2.23
CD44-239ENST00000639002 IGKV1-16P04430 117 aa1.14□□□□□ -2.23
CD44-239ENST00000639002 HIST1H1BP16401 226 aaKnown RBP1.14□□□□□ -2.23
CD44-239ENST00000639002 ZNF22P17026 224 aaPredicted RBP1.14□□□□□ -2.23
CD44-239ENST00000639002 ZNF25P17030 456 aaPredicted RBP1.14□□□□□ -2.23
CD44-239ENST00000639002 CRYGSP22914 178 aa1.14□□□□□ -2.23
CD44-239ENST00000639002 RNASE4P34096 147 aaKnown RBP1.14□□□□□ -2.23
CD44-239ENST00000639002 FUSP35637 526 aaKnown RBP eCLIP1.14□□□□□ -2.23
CD44-239ENST00000639002 HINT1P49773 126 aaPredicted RBP1.14□□□□□ -2.23
CD44-239ENST00000639002 RAB5CP51148 216 aa1.14□□□□□ -2.23
CD44-239ENST00000639002 MAXP61244 160 aa1.14□□□□□ -2.23
CD44-239ENST00000639002 DYNLT1P63172 113 aa1.14□□□□□ -2.23
CD44-239ENST00000639002 SUPT4H1P63272 117 aaKnown RBP1.14□□□□□ -2.23
CD44-239ENST00000639002 ERHP84090 104 aaKnown RBP1.14□□□□□ -2.23
CD44-239ENST00000639002 KISS1Q15726 138 aa1.14□□□□□ -2.23
CD44-239ENST00000639002 RNASE10Q5GAN6 216 aaKnown RBP1.14□□□□□ -2.23
CD44-239ENST00000639002 SPANXN5Q5MJ07 72 aa1.14□□□□□ -2.23
CD44-239ENST00000639002 SOSTDC1Q6X4U4 206 aa1.14□□□□□ -2.23
CD44-239ENST00000639002 FAM216BQ8N7L0 139 aa1.14□□□□□ -2.23
CD44-239ENST00000639002 Q8NAQ8 132 aa1.14□□□□□ -2.23
CD44-239ENST00000639002 OR10AC1Q8NH08 325 aa1.14□□□□□ -2.23
CD44-239ENST00000639002 COPS9Q8WXC6 57 aa1.14□□□□□ -2.23
CD44-239ENST00000639002 CARD19Q96LW7 228 aa1.14□□□□□ -2.23
CD44-239ENST00000639002 GGACTQ9BVM4 153 aa1.14□□□□□ -2.23
CD44-239ENST00000639002 TMEM191AQ9H0A3 160 aa1.14□□□□□ -2.23
CD44-239ENST00000639002 TAF9BQ9HBM6 251 aa1.14□□□□□ -2.23
CD44-239ENST00000639002 CCDC167Q9P0B6 97 aa1.14□□□□□ -2.23
CD44-239ENST00000639002 RNF11Q9Y3C5 154 aa1.14□□□□□ -2.23
CD44-239ENST00000639002 LY96Q9Y6Y9 160 aa1.14□□□□□ -2.23
CD44-239ENST00000639002 MINOS1-NBL1R4GNA1 71 aa1.14□□□□□ -2.23
CD44-239ENST00000639002 ANAPC1Q9H1A4 1944 aa1.14□□□□□ -2.23
CD44-239ENST00000639002 ARHGEF28Q8N1W1 1705 aaKnown RBP1.14□□□□□ -2.23
CD44-239ENST00000639002 SPEGQ15772 3267 aa1.14□□□□□ -2.23
CD44-239ENST00000639002 PTPRGP23470 1445 aa1.14□□□□□ -2.23
CD44-239ENST00000639002 TLN1Q9Y490 2541 aaKnown RBP1.14□□□□□ -2.23
CD44-239ENST00000639002 MYO5AQ9Y4I1 1855 aaKnown RBP1.14□□□□□ -2.23
CD44-239ENST00000639002 UBR5O95071 2799 aaPredicted RBP1.13□□□□□ -2.23
CD44-239ENST00000639002 CECR2Q9BXF3 1484 aa1.13□□□□□ -2.23
CD44-239ENST00000639002 IGHV1-18A0A0C4DH31 117 aa1.13□□□□□ -2.23
CD44-239ENST00000639002 A0A0J9YX75 114 aa1.13□□□□□ -2.23
CD44-239ENST00000639002 PNMA8CA0A1B0GUJ8 204 aa1.13□□□□□ -2.23
CD44-239ENST00000639002 LOC107986453A0A1B0GWG9 222 aa1.13□□□□□ -2.23
CD44-239ENST00000639002 C20orf202A1L168 122 aa1.13□□□□□ -2.23
CD44-239ENST00000639002 HMSDA8MTL9 139 aa1.13□□□□□ -2.23
CD44-239ENST00000639002 C17orf112F2Z3M2 114 aa1.13□□□□□ -2.23
CD44-239ENST00000639002 F6UZH7 168 aa1.13□□□□□ -2.23
CD44-239ENST00000639002 K7ERJ3 54 aa1.13□□□□□ -2.23
CD44-239ENST00000639002 CDC42EP2O14613 210 aa1.13□□□□□ -2.23
CD44-239ENST00000639002 TRGC1P0CF51 173 aa1.13□□□□□ -2.23
CD44-239ENST00000639002 IGLC6P0CF74 106 aa1.13□□□□□ -2.23
CD44-239ENST00000639002 SMIM6P0DI80 62 aa1.13□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms