RNA–Protein interactions for RNA: ENST00000635750.1

SCN1A-209, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,299 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-209ENST00000635750 H3BQ85 93 aa4.52□□□□□ -1.69
SCN1A-209ENST00000635750 IGHV1-69P01742 117 aa4.52□□□□□ -1.69
SCN1A-209ENST00000635750 CD59P13987 128 aa4.52□□□□□ -1.69
SCN1A-209ENST00000635750 UBE2AP49459 152 aa4.52□□□□□ -1.69
SCN1A-209ENST00000635750 C15orf53Q8NAA6 179 aa4.52□□□□□ -1.69
SCN1A-209ENST00000635750 TRAV12-1A0A0B4J245 112 aa4.52□□□□□ -1.69
SCN1A-209ENST00000635750 PIN1P1O15428 100 aa4.52□□□□□ -1.69
SCN1A-209ENST00000635750 CFHR2P36980 270 aa4.52□□□□□ -1.69
SCN1A-209ENST00000635750 FOXG1P55316 489 aaPredicted RBP4.52□□□□□ -1.69
SCN1A-209ENST00000635750 GUSBP1Q15486 140 aa4.52□□□□□ -1.69
SCN1A-209ENST00000635750 ZNRF2Q8NHG8 242 aa4.52□□□□□ -1.69
SCN1A-209ENST00000635750 NXPH4O95158 308 aa4.52□□□□□ -1.69
SCN1A-209ENST00000635750 CDKN1BP46527 198 aa4.52□□□□□ -1.69
SCN1A-209ENST00000635750 HERVK_113P63121 156 aa4.52□□□□□ -1.69
SCN1A-209ENST00000635750 ZFP36L1Q07352 338 aaKnown RBP4.52□□□□□ -1.69
SCN1A-209ENST00000635750 C8orf31Q8N9H6 132 aa4.52□□□□□ -1.69
SCN1A-209ENST00000635750 Q8TAT8 98 aa4.52□□□□□ -1.69
SCN1A-209ENST00000635750 BAALCQ8WXS3 180 aa4.52□□□□□ -1.69
SCN1A-209ENST00000635750 COL24A1Q17RW2 1714 aa4.52□□□□□ -1.69
SCN1A-209ENST00000635750 CLPSL2Q6UWE3 100 aa4.51□□□□□ -1.69
SCN1A-209ENST00000635750 MRPL52Q86TS9 123 aaKnown RBP4.51□□□□□ -1.69
SCN1A-209ENST00000635750 IGLV3-12A0A075B6K2 115 aa4.51□□□□□ -1.69
SCN1A-209ENST00000635750 TRBV20-1A0A075B6N2 111 aa4.51□□□□□ -1.69
SCN1A-209ENST00000635750 A0A1W2PPI3 338 aa4.51□□□□□ -1.69
SCN1A-209ENST00000635750 HLA-DRB4P13762 266 aa4.51□□□□□ -1.69
SCN1A-209ENST00000635750 RUSC1-AS1Q66K80 236 aa4.51□□□□□ -1.69
SCN1A-209ENST00000635750 ZNF837Q96EG3 531 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-209ENST00000635750 HLA-DRB4X5D2U9 266 aa4.51□□□□□ -1.69
SCN1A-209ENST00000635750 Q6ZWC4 215 aa4.51□□□□□ -1.69
SCN1A-209ENST00000635750 MAPK1IP1LQ8NDC0 245 aa4.51□□□□□ -1.69
SCN1A-209ENST00000635750 MRPL36Q9P0J6 103 aaKnown RBP4.51□□□□□ -1.69
SCN1A-209ENST00000635750 IGHV1OR15-1A0A075B7D0 117 aa4.51□□□□□ -1.69
SCN1A-209ENST00000635750 RHOHQ15669 191 aa4.51□□□□□ -1.69
SCN1A-209ENST00000635750 FNDC1Q4ZHG4 1894 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-209ENST00000635750 CD300CQ08708 224 aa4.51□□□□□ -1.69
SCN1A-209ENST00000635750 A0A096LPF7 62 aa4.51□□□□□ -1.69
SCN1A-209ENST00000635750 TFF1P04155 84 aa4.51□□□□□ -1.69
SCN1A-209ENST00000635750 RNASE2P10153 161 aaKnown RBP4.51□□□□□ -1.69
SCN1A-209ENST00000635750 TMEM75Q8N9X5 138 aa4.51□□□□□ -1.69
SCN1A-209ENST00000635750 NUP35Q8NFH5 326 aa4.51□□□□□ -1.69
SCN1A-209ENST00000635750 TP53TG1Q9Y2A0 90 aa4.51□□□□□ -1.69
SCN1A-209ENST00000635750 CARHSP1Q9Y2V2 147 aaKnown RBP4.51□□□□□ -1.69
SCN1A-209ENST00000635750 ARMS2P0C7Q2 107 aa4.51□□□□□ -1.69
SCN1A-209ENST00000635750 KLK9Q9UKQ9 250 aa4.51□□□□□ -1.69
SCN1A-209ENST00000635750 IGKV1D-13A0A0B4J2D9 117 aa4.5□□□□□ -1.69
SCN1A-209ENST00000635750 KNCNA6PVL3 124 aa4.5□□□□□ -1.69
SCN1A-209ENST00000635750 C4orf51C9J302 202 aa4.5□□□□□ -1.69
SCN1A-209ENST00000635750 IGKV1-13P0DP09 117 aa4.5□□□□□ -1.69
SCN1A-209ENST00000635750 COL8A2P25067 703 aa4.5□□□□□ -1.69
SCN1A-209ENST00000635750 TREML4Q6UXN2 200 aa4.5□□□□□ -1.69
SCN1A-209ENST00000635750 IGLV3-32A0A0A0MS00 114 aa4.5□□□□□ -1.69
SCN1A-209ENST00000635750 IGKV1D-43A0A0B4J1Z2 117 aa4.5□□□□□ -1.69
SCN1A-209ENST00000635750 TNS1Q9HBL0 1735 aaKnown RBP4.5□□□□□ -1.69
SCN1A-209ENST00000635750 A0A1B0GUS0 222 aa4.5□□□□□ -1.69
SCN1A-209ENST00000635750 CCL24O00175 119 aa4.5□□□□□ -1.69
SCN1A-209ENST00000635750 SPINK8P0C7L1 97 aa4.5□□□□□ -1.69
SCN1A-209ENST00000635750 MP68P56378 58 aa4.5□□□□□ -1.69
SCN1A-209ENST00000635750 TCF15Q12870 199 aa4.5□□□□□ -1.69
SCN1A-209ENST00000635750 C1QL4Q86Z23 238 aa4.5□□□□□ -1.69
SCN1A-209ENST00000635750 ICOSQ9Y6W8 199 aa4.5□□□□□ -1.69
SCN1A-209ENST00000635750 USF3Q68DE3 2245 aa4.5□□□□□ -1.69
SCN1A-209ENST00000635750 COL11A2P13942 1736 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-209ENST00000635750 A0A1B0GTI1 187 aa4.5□□□□□ -1.69
SCN1A-209ENST00000635750 K7ENP7 123 aa4.5□□□□□ -1.69
SCN1A-209ENST00000635750 IGKV1-39P01597 117 aa4.5□□□□□ -1.69
SCN1A-209ENST00000635750 IGKV1D-39P04432 117 aa4.5□□□□□ -1.69
SCN1A-209ENST00000635750 PRB4P10163 310 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-209ENST00000635750 CRYGSP22914 178 aa4.5□□□□□ -1.69
SCN1A-209ENST00000635750 CFHR4Q92496 578 aa4.5□□□□□ -1.69
SCN1A-209ENST00000635750 FANCD2OSQ96PS1 177 aa4.5□□□□□ -1.69
SCN1A-209ENST00000635750 ANAPC1Q9H1A4 1944 aa4.5□□□□□ -1.69
SCN1A-209ENST00000635750 LRRC37AA6NMS7 1700 aa4.5□□□□□ -1.69
SCN1A-209ENST00000635750 IGHV2-70DA0A0C4DH43 119 aa4.5□□□□□ -1.69
SCN1A-209ENST00000635750 FNDC10F2Z333 226 aa4.5□□□□□ -1.69
SCN1A-209ENST00000635750 LINC01551Q86U37 167 aa4.5□□□□□ -1.69
SCN1A-209ENST00000635750 GAFA1Q96PS6 74 aa4.5□□□□□ -1.69
SCN1A-209ENST00000635750 GFRA4Q9GZZ7 299 aa4.5□□□□□ -1.69
SCN1A-209ENST00000635750 TMEM242Q9NWH2 141 aa4.5□□□□□ -1.69
SCN1A-209ENST00000635750 NDUFA4O00483 81 aa4.49□□□□□ -1.69
SCN1A-209ENST00000635750 ZNF134P52741 427 aa4.49□□□□□ -1.69
SCN1A-209ENST00000635750 RBM3P98179 157 aaKnown RBP4.49□□□□□ -1.69
SCN1A-209ENST00000635750 C1orf194Q5T5A4 169 aa4.49□□□□□ -1.69
SCN1A-209ENST00000635750 C9orf47Q6ZRZ4 202 aa4.49□□□□□ -1.69
SCN1A-209ENST00000635750 TMEM14BQ9NUH8 114 aa4.49□□□□□ -1.69
SCN1A-209ENST00000635750 MRPL27Q9P0M9 148 aaKnown RBP4.49□□□□□ -1.69
SCN1A-209ENST00000635750 TANC2Q9HCD6 1990 aa4.49□□□□□ -1.69
SCN1A-209ENST00000635750 XCL1P47992 114 aa4.49□□□□□ -1.69
SCN1A-209ENST00000635750 REG4Q9BYZ8 158 aa4.49□□□□□ -1.69
SCN1A-209ENST00000635750 C14orf132Q9NPU4 83 aa4.49□□□□□ -1.69
SCN1A-209ENST00000635750 SPANXCQ9NY87 97 aa4.49□□□□□ -1.69
SCN1A-209ENST00000635750 KLF2Q9Y5W3 355 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-209ENST00000635750 NTN3O00634 580 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-209ENST00000635750 SPART-AS1P0CW21 52 aa4.49□□□□□ -1.69
SCN1A-209ENST00000635750 C10orf55Q5SWW7 151 aa4.49□□□□□ -1.69
SCN1A-209ENST00000635750 BVES-AS1Q5T3Y7 98 aa4.49□□□□□ -1.69
SCN1A-209ENST00000635750 RPP25LQ8N5L8 163 aaKnown RBP4.49□□□□□ -1.69
SCN1A-209ENST00000635750 OR11H6Q8NGC7 330 aa4.49□□□□□ -1.69
SCN1A-209ENST00000635750 A0A0A6YYD4 124 aa4.49□□□□□ -1.69
SCN1A-209ENST00000635750 SHISA9B4DS77 424 aa4.49□□□□□ -1.69
SCN1A-209ENST00000635750 K7ERS5 55 aa4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 109.1 ms