RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 TUBA4BQ9H853 241 aa2.36□□□□□ -2.03
LINC00560-201ENST00000564593 KCNIP2Q9NS61 270 aa2.36□□□□□ -2.03
LINC00560-201ENST00000564593 LSM5Q9Y4Y9 91 aaKnown RBP2.36□□□□□ -2.03
LINC00560-201ENST00000564593 TRAPPC1Q9Y5R8 145 aa2.36□□□□□ -2.03
LINC00560-201ENST00000564593 MPC1Q9Y5U8 109 aa2.36□□□□□ -2.03
LINC00560-201ENST00000564593 DNAJC13O75165 2243 aa2.35□□□□□ -2.03
LINC00560-201ENST00000564593 CACNA1DQ01668 2161 aa2.35□□□□□ -2.03
LINC00560-201ENST00000564593 IGKV1OR2-108A0A075B7D4 117 aa2.35□□□□□ -2.03
LINC00560-201ENST00000564593 C3orf85A0A1B0GTC6 90 aa2.35□□□□□ -2.03
LINC00560-201ENST00000564593 PQLC2LA1A4F0 135 aa2.35□□□□□ -2.03
LINC00560-201ENST00000564593 PGPA6NDG6 321 aa2.35□□□□□ -2.03
LINC00560-201ENST00000564593 H3BP45 60 aa2.35□□□□□ -2.03
LINC00560-201ENST00000564593 M0R036 132 aa2.35□□□□□ -2.03
LINC00560-201ENST00000564593 PPYP01298 95 aa2.35□□□□□ -2.03
LINC00560-201ENST00000564593 IFNA17P01571 189 aa2.35□□□□□ -2.03
LINC00560-201ENST00000564593 CCL3P10147 92 aa2.35□□□□□ -2.03
LINC00560-201ENST00000564593 CEBPGP53567 150 aa2.35□□□□□ -2.03
LINC00560-201ENST00000564593 TMEM33P57088 247 aa2.35□□□□□ -2.03
LINC00560-201ENST00000564593 GNG3P63215 75 aa2.35□□□□□ -2.03
LINC00560-201ENST00000564593 SUPT4H1P63272 117 aaKnown RBP2.35□□□□□ -2.03
LINC00560-201ENST00000564593 RPL19P84098 196 aaKnown RBP2.35□□□□□ -2.03
LINC00560-201ENST00000564593 PLGLB1Q02325 96 aa2.35□□□□□ -2.03
LINC00560-201ENST00000564593 CATR1Q13166 79 aa2.35□□□□□ -2.03
LINC00560-201ENST00000564593 TBC1D28Q2M2D7 210 aa2.35□□□□□ -2.03
LINC00560-201ENST00000564593 CEACAM21Q3KPI0 293 aa2.35□□□□□ -2.03
LINC00560-201ENST00000564593 SPIN3Q5JUX0 258 aa2.35□□□□□ -2.03
LINC00560-201ENST00000564593 FAM74A1Q5RGS3 127 aa2.35□□□□□ -2.03
LINC00560-201ENST00000564593 AADACL3Q5VUY0 350 aa2.35□□□□□ -2.03
LINC00560-201ENST00000564593 OR5A2Q8NGI9 324 aa2.35□□□□□ -2.03
LINC00560-201ENST00000564593 OR10D3Q8NH80 312 aa2.35□□□□□ -2.03
LINC00560-201ENST00000564593 OR10J5Q8NHC4 309 aa2.35□□□□□ -2.03
LINC00560-201ENST00000564593 CIB3Q96Q77 187 aaPredicted RBP2.35□□□□□ -2.03
LINC00560-201ENST00000564593 LINC01587Q99440 93 aa2.35□□□□□ -2.03
LINC00560-201ENST00000564593 GINS3Q9BRX5 216 aa2.35□□□□□ -2.03
LINC00560-201ENST00000564593 RTL8AQ9BWD3 113 aa2.35□□□□□ -2.03
LINC00560-201ENST00000564593 EIF5A2Q9GZV4 153 aaKnown RBP2.35□□□□□ -2.03
LINC00560-201ENST00000564593 TMEM222Q9H0R3 208 aa2.35□□□□□ -2.03
LINC00560-201ENST00000564593 SLC35B3Q9H1N7 401 aa2.35□□□□□ -2.03
LINC00560-201ENST00000564593 C19orf12Q9NSK7 152 aa2.35□□□□□ -2.03
LINC00560-201ENST00000564593 LYRM2Q9NU23 88 aaPredicted RBP2.35□□□□□ -2.03
LINC00560-201ENST00000564593 ZNF230Q9UIE0 474 aaPredicted RBP2.35□□□□□ -2.03
LINC00560-201ENST00000564593 AK3Q9UIJ7 227 aa2.35□□□□□ -2.03
LINC00560-201ENST00000564593 ICOSQ9Y6W8 199 aa2.35□□□□□ -2.03
LINC00560-201ENST00000564593 R4GN34 69 aa2.35□□□□□ -2.03
LINC00560-201ENST00000564593 TRIOBPQ9H2D6 2365 aa2.34□□□□□ -2.03
LINC00560-201ENST00000564593 ESPL1Q14674 2120 aa2.34□□□□□ -2.03
LINC00560-201ENST00000564593 NCOR1O75376 2440 aa2.34□□□□□ -2.03
LINC00560-201ENST00000564593 A0A087WWC5 75 aa2.34□□□□□ -2.03
LINC00560-201ENST00000564593 IGKV1D-43A0A0B4J1Z2 117 aa2.34□□□□□ -2.03
LINC00560-201ENST00000564593 IGKV1-9A0A0C4DH69 117 aa2.34□□□□□ -2.03
LINC00560-201ENST00000564593 A0A0J9YW62 118 aa2.34□□□□□ -2.03
LINC00560-201ENST00000564593 A0A1W2PNN7 141 aa2.34□□□□□ -2.03
LINC00560-201ENST00000564593 F5H768 121 aa2.34□□□□□ -2.03
LINC00560-201ENST00000564593 H3BQ85 93 aa2.34□□□□□ -2.03
LINC00560-201ENST00000564593 SDCBPO00560 298 aaPredicted RBP2.34□□□□□ -2.03
LINC00560-201ENST00000564593 IGLV6-57P01721 117 aa2.34□□□□□ -2.03
LINC00560-201ENST00000564593 ZNF708P17019 499 aa2.34□□□□□ -2.03
LINC00560-201ENST00000564593 S100PP25815 95 aa2.34□□□□□ -2.03
LINC00560-201ENST00000564593 S100A2P29034 98 aa2.34□□□□□ -2.03
LINC00560-201ENST00000564593 AKR1D1P51857 326 aa2.34□□□□□ -2.03
LINC00560-201ENST00000564593 AKR1C2P52895 323 aa2.34□□□□□ -2.03
LINC00560-201ENST00000564593 FXYD4P59646 89 aa2.34□□□□□ -2.03
LINC00560-201ENST00000564593 SERF2P84101 59 aa2.34□□□□□ -2.03
LINC00560-201ENST00000564593 TAF9Q16594 264 aa2.34□□□□□ -2.03
LINC00560-201ENST00000564593 GUK1Q16774 197 aa2.34□□□□□ -2.03
LINC00560-201ENST00000564593 RPL7L1Q6DKI1 246 aaKnown RBP2.34□□□□□ -2.03
LINC00560-201ENST00000564593 SLC25A26Q70HW3 274 aa2.34□□□□□ -2.03
LINC00560-201ENST00000564593 C6orf201Q7Z4U5 140 aa2.34□□□□□ -2.03
LINC00560-201ENST00000564593 SLC35E3Q7Z769 313 aa2.34□□□□□ -2.03
LINC00560-201ENST00000564593 ZNF664Q8N3J9 261 aa2.34□□□□□ -2.03
LINC00560-201ENST00000564593 OR13D1Q8NGV5 346 aa2.34□□□□□ -2.03
LINC00560-201ENST00000564593 LSM10Q969L4 123 aaKnown RBP2.34□□□□□ -2.03
LINC00560-201ENST00000564593 TMEM56Q96MV1 263 aa2.34□□□□□ -2.03
LINC00560-201ENST00000564593 PSMG3Q9BT73 122 aaPredicted RBP2.34□□□□□ -2.03
LINC00560-201ENST00000564593 BCL2L14Q9BZR8 327 aa2.34□□□□□ -2.03
LINC00560-201ENST00000564593 OR5AC2Q9NZP5 309 aa2.34□□□□□ -2.03
LINC00560-201ENST00000564593 RBM7Q9Y580 266 aaKnown RBP2.34□□□□□ -2.03
LINC00560-201ENST00000564593 TMEM56-RWDD3S4R434 201 aa2.34□□□□□ -2.03
LINC00560-201ENST00000564593 FAM186AA6NE01 2351 aa2.34□□□□□ -2.04
LINC00560-201ENST00000564593 KMT2BQ9UMN6 2715 aaPredicted RBP2.33□□□□□ -2.04
LINC00560-201ENST00000564593 AHCTF1Q8WYP5 2266 aa2.33□□□□□ -2.04
LINC00560-201ENST00000564593 TRAV8-3A0A0A6YYJ7 113 aa2.33□□□□□ -2.04
LINC00560-201ENST00000564593 IGHV3-21A0A0B4J1V1 117 aa2.33□□□□□ -2.04
LINC00560-201ENST00000564593 IGHV3-43A0A0B4J1X8 118 aa2.33□□□□□ -2.04
LINC00560-201ENST00000564593 TRAV1-1A0A0B4J248 108 aa2.33□□□□□ -2.04
LINC00560-201ENST00000564593 C5orf49A4QMS7 147 aa2.33□□□□□ -2.04
LINC00560-201ENST00000564593 C17orf112F2Z3M2 114 aa2.33□□□□□ -2.04
LINC00560-201ENST00000564593 GEMIN2O14893 280 aaKnown RBP2.33□□□□□ -2.04
LINC00560-201ENST00000564593 NDUFA2O43678 99 aa2.33□□□□□ -2.04
LINC00560-201ENST00000564593 SSSCA1O60232 199 aa2.33□□□□□ -2.04
LINC00560-201ENST00000564593 KLF7O75840 302 aaPredicted RBP2.33□□□□□ -2.04
LINC00560-201ENST00000564593 NAPSAO96009 420 aa2.33□□□□□ -2.04
LINC00560-201ENST00000564593 TRGV3P03979 118 aa2.33□□□□□ -2.04
LINC00560-201ENST00000564593 HRES1P13985 223 aa2.33□□□□□ -2.04
LINC00560-201ENST00000564593 SNCAP37840 140 aa2.33□□□□□ -2.04
LINC00560-201ENST00000564593 LPAR6P43657 344 aa2.33□□□□□ -2.04
LINC00560-201ENST00000564593 SULT1A1P50225 295 aa2.33□□□□□ -2.04
LINC00560-201ENST00000564593 HLA-DRB3P79483 266 aa2.33□□□□□ -2.04
LINC00560-201ENST00000564593 PSG4Q00888 419 aa2.33□□□□□ -2.04
LINC00560-201ENST00000564593 PRDX4Q13162 271 aa2.33□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 96.9 ms