RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 HIST1H1AQ02539 215 aaPredicted RBP10.4□□□□□ -0.74
CLN3-210ENST00000563874 C2orf91Q6ZV80 131 aa10.4□□□□□ -0.74
CLN3-210ENST00000563874 TMEM75Q8N9X5 138 aa10.4□□□□□ -0.74
CLN3-210ENST00000563874 HILPDAQ9Y5L2 63 aa10.4□□□□□ -0.74
CLN3-210ENST00000563874 H3BRN7 92 aa10.4□□□□□ -0.74
CLN3-210ENST00000563874 K7EQM0 130 aa10.4□□□□□ -0.74
CLN3-210ENST00000563874 TIMM23O14925 209 aa10.4□□□□□ -0.74
CLN3-210ENST00000563874 CSN1S1P47710 185 aa10.4□□□□□ -0.74
CLN3-210ENST00000563874 RHOGP84095 191 aa10.4□□□□□ -0.74
CLN3-210ENST00000563874 LYZL1Q6UWQ5 148 aa10.4□□□□□ -0.74
CLN3-210ENST00000563874 MS4A6AQ9H2W1 248 aa10.4□□□□□ -0.74
CLN3-210ENST00000563874 A0A096LNJ9 63 aa10.39□□□□□ -0.75
CLN3-210ENST00000563874 PPIAL4CA0A0B4J2A2 164 aa10.39□□□□□ -0.75
CLN3-210ENST00000563874 PPIAL4GP0DN37 164 aa10.39□□□□□ -0.75
CLN3-210ENST00000563874 ZNF414Q96IQ9 312 aa10.39□□□□□ -0.75
CLN3-210ENST00000563874 ONECUT1Q9UBC0 465 aa10.39□□□□□ -0.75
CLN3-210ENST00000563874 PTPRZ1P23471 2315 aaPredicted RBP10.39□□□□□ -0.75
CLN3-210ENST00000563874 CT45A10P0DMU9 189 aa10.39□□□□□ -0.75
CLN3-210ENST00000563874 COX8AP10176 69 aa10.39□□□□□ -0.75
CLN3-210ENST00000563874 RIPPLY3P57055 190 aa10.39□□□□□ -0.75
CLN3-210ENST00000563874 CITED1Q99966 193 aa10.39□□□□□ -0.75
CLN3-210ENST00000563874 SIGLEC8Q9NYZ4 499 aa10.39□□□□□ -0.75
CLN3-210ENST00000563874 ASH1LQ9NR48 2969 aaKnown RBP10.39□□□□□ -0.75
CLN3-210ENST00000563874 SMKR1H3BMG3 65 aa10.39□□□□□ -0.75
CLN3-210ENST00000563874 IGHV3-23P01764 117 aa10.39□□□□□ -0.75
CLN3-210ENST00000563874 GFRALQ6UXV0 394 aa10.39□□□□□ -0.75
CLN3-210ENST00000563874 WFDC3Q8IUB2 231 aa10.39□□□□□ -0.75
CLN3-210ENST00000563874 CST9LQ9H4G1 147 aa10.39□□□□□ -0.75
CLN3-210ENST00000563874 ANKHD1Q8IWZ3 2542 aaKnown RBP10.38□□□□□ -0.75
CLN3-210ENST00000563874 IGKV2-40A0A087WW87 121 aaPredicted RBP10.38□□□□□ -0.75
CLN3-210ENST00000563874 IGKV2D-40P01614 121 aaPredicted RBP10.38□□□□□ -0.75
CLN3-210ENST00000563874 IGFL4Q6B9Z1 124 aa10.38□□□□□ -0.75
CLN3-210ENST00000563874 PIP4P2Q8N4L2 257 aa10.38□□□□□ -0.75
CLN3-210ENST00000563874 ABHD17AQ96GS6 310 aa10.38□□□□□ -0.75
CLN3-210ENST00000563874 NAA38Q9BRA0 125 aaKnown RBP10.38□□□□□ -0.75
CLN3-210ENST00000563874 IGHV3OR16-8A0A075B7F1 116 aa10.38□□□□□ -0.75
CLN3-210ENST00000563874 LY6HO94772 140 aa10.38□□□□□ -0.75
CLN3-210ENST00000563874 C7orf71A4D174 169 aa10.37□□□□□ -0.75
CLN3-210ENST00000563874 CD5LO43866 347 aa10.37□□□□□ -0.75
CLN3-210ENST00000563874 PAX2Q02962 417 aa10.37□□□□□ -0.75
CLN3-210ENST00000563874 PRR30Q53SZ7 412 aaPredicted RBP10.37□□□□□ -0.75
CLN3-210ENST00000563874 PRELID3AQ96N28 172 aa10.37□□□□□ -0.75
CLN3-210ENST00000563874 HIF1ANQ9NWT6 349 aa10.37□□□□□ -0.75
CLN3-210ENST00000563874 GNG7O60262 68 aa10.37□□□□□ -0.75
CLN3-210ENST00000563874 CACNG7P62955 275 aa10.37□□□□□ -0.75
CLN3-210ENST00000563874 Q8TAT8 98 aa10.37□□□□□ -0.75
CLN3-210ENST00000563874 TMEM189A5PLL7 270 aa10.37□□□□□ -0.75
CLN3-210ENST00000563874 MRPS12O15235 138 aaKnown RBP10.37□□□□□ -0.75
CLN3-210ENST00000563874 HES1Q14469 280 aa10.37□□□□□ -0.75
CLN3-210ENST00000563874 SH2D1AO60880 128 aa10.36□□□□□ -0.75
CLN3-210ENST00000563874 OCIAD2Q56VL3 154 aa10.36□□□□□ -0.75
CLN3-210ENST00000563874 AAMDCQ9H7C9 122 aa10.36□□□□□ -0.75
CLN3-210ENST00000563874 IGHV3-35A0A0C4DH35 117 aa10.36□□□□□ -0.75
CLN3-210ENST00000563874 TRBV6-1A0A0K0K1D8 114 aa10.36□□□□□ -0.75
CLN3-210ENST00000563874 TMEM97Q5BJF2 176 aa10.36□□□□□ -0.75
CLN3-210ENST00000563874 RABAC1Q9UI14 185 aa10.36□□□□□ -0.75
CLN3-210ENST00000563874 GAGE12BA1L429 117 aa10.35□□□□□ -0.75
CLN3-210ENST00000563874 FAM104BQ5XKR9 115 aa10.35□□□□□ -0.75
CLN3-210ENST00000563874 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.35□□□□□ -0.75
CLN3-210ENST00000563874 CRYBA4P53673 196 aa10.35□□□□□ -0.75
CLN3-210ENST00000563874 KLRD1Q13241 179 aa10.35□□□□□ -0.75
CLN3-210ENST00000563874 MRPL51Q4U2R6 128 aaKnown RBP10.35□□□□□ -0.75
CLN3-210ENST00000563874 ORMDL3Q8N138 153 aa10.35□□□□□ -0.75
CLN3-210ENST00000563874 THYN1Q9P016 225 aa10.35□□□□□ -0.75
CLN3-210ENST00000563874 NPIPB5A8MRT5 1133 aa10.35□□□□□ -0.75
CLN3-210ENST00000563874 FGF6P10767 208 aa10.35□□□□□ -0.75
CLN3-210ENST00000563874 LINC01560Q8TB33 94 aa10.35□□□□□ -0.75
CLN3-210ENST00000563874 JKAMPQ9P055 326 aa10.35□□□□□ -0.75
CLN3-210ENST00000563874 PEF1Q9UBV8 284 aaKnown RBP10.35□□□□□ -0.75
CLN3-210ENST00000563874 A0A1B0GV72 72 aa10.34□□□□□ -0.75
CLN3-210ENST00000563874 A0A1B0GW15 77 aa10.34□□□□□ -0.75
CLN3-210ENST00000563874 LY6LH3BQJ8 138 aa10.34□□□□□ -0.75
CLN3-210ENST00000563874 NBR2O15453 112 aa10.34□□□□□ -0.75
CLN3-210ENST00000563874 HLA-DMBP28068 263 aa10.34□□□□□ -0.75
CLN3-210ENST00000563874 TWIST1Q15672 202 aa10.34□□□□□ -0.75
CLN3-210ENST00000563874 Q6AWC8 147 aa10.34□□□□□ -0.75
CLN3-210ENST00000563874 ZNF493Q6ZR52 646 aa10.34□□□□□ -0.75
CLN3-210ENST00000563874 LYPD1Q8N2G4 141 aa10.34□□□□□ -0.75
CLN3-210ENST00000563874 NPYP01303 97 aa10.34□□□□□ -0.75
CLN3-210ENST00000563874 EGR2P11161 476 aaPredicted RBP10.34□□□□□ -0.75
CLN3-210ENST00000563874 Q8NA96 180 aa10.34□□□□□ -0.75
CLN3-210ENST00000563874 GATD1Q8NB37 220 aa10.34□□□□□ -0.75
CLN3-210ENST00000563874 C18orf15Q96N68 181 aa10.34□□□□□ -0.75
CLN3-210ENST00000563874 WI2-2373I1.2A0A1W2PRP0 233 aa10.33□□□□□ -0.76
CLN3-210ENST00000563874 CKS2P33552 79 aa10.33□□□□□ -0.76
CLN3-210ENST00000563874 ZNF80P51504 273 aaPredicted RBP10.33□□□□□ -0.76
CLN3-210ENST00000563874 MSRB1Q9NZV6 116 aa10.33□□□□□ -0.76
CLN3-210ENST00000563874 TRAV26-1A0A087WT03 109 aa10.33□□□□□ -0.76
CLN3-210ENST00000563874 CEACAM3P40198 252 aa10.33□□□□□ -0.76
CLN3-210ENST00000563874 NMUP48645 174 aa10.33□□□□□ -0.76
CLN3-210ENST00000563874 VGLL1Q99990 258 aa10.33□□□□□ -0.76
CLN3-210ENST00000563874 GAS8-AS1O95177 125 aa10.32□□□□□ -0.76
CLN3-210ENST00000563874 PCP2Q8IVA1 136 aa10.32□□□□□ -0.76
CLN3-210ENST00000563874 RAB37Q96AX2 223 aa10.32□□□□□ -0.76
CLN3-210ENST00000563874 FANCD2OSQ96PS1 177 aa10.32□□□□□ -0.76
CLN3-210ENST00000563874 CD3EP07766 207 aa10.32□□□□□ -0.76
CLN3-210ENST00000563874 TM4SF20Q53R12 229 aa10.32□□□□□ -0.76
CLN3-210ENST00000563874 GAGE10A6NGK3 116 aa10.32□□□□□ -0.76
CLN3-210ENST00000563874 NCBP2LA6PVI3 153 aaKnown RBP10.32□□□□□ -0.76
CLN3-210ENST00000563874 NDPQ00604 133 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 177.4 ms