RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 PGPEP1Q9NXJ5 209 aa5.87□□□□□ -1.47
LIMA1-213ENST00000552720 COX11Q9Y6N1 276 aa5.87□□□□□ -1.47
LIMA1-213ENST00000552720 IGLV11-55A0A075B6I3 123 aa5.86□□□□□ -1.47
LIMA1-213ENST00000552720 C20orf202A1L168 122 aa5.86□□□□□ -1.47
LIMA1-213ENST00000552720 OR2T8A6NH00 312 aa5.86□□□□□ -1.47
LIMA1-213ENST00000552720 NDUFA3O95167 84 aa5.86□□□□□ -1.47
LIMA1-213ENST00000552720 RIGQ13278 110 aa5.86□□□□□ -1.47
LIMA1-213ENST00000552720 C5orf64Q2M2E5 130 aa5.86□□□□□ -1.47
LIMA1-213ENST00000552720 FAM162BQ5T6X4 162 aa5.86□□□□□ -1.47
LIMA1-213ENST00000552720 LYZL1Q6UWQ5 148 aa5.86□□□□□ -1.47
LIMA1-213ENST00000552720 AMN1Q8IY45 258 aa5.86□□□□□ -1.47
LIMA1-213ENST00000552720 RNF5Q99942 180 aa5.86□□□□□ -1.47
LIMA1-213ENST00000552720 TMEM191AQ9H0A3 160 aa5.86□□□□□ -1.47
LIMA1-213ENST00000552720 A0A087X0K7 114 aa5.86□□□□□ -1.47
LIMA1-213ENST00000552720 A0A096LNJ9 63 aa5.86□□□□□ -1.47
LIMA1-213ENST00000552720 TRBV6-1A0A0K0K1D8 114 aa5.86□□□□□ -1.47
LIMA1-213ENST00000552720 D6R8Y8 96 aa5.86□□□□□ -1.47
LIMA1-213ENST00000552720 K7EQM0 130 aa5.86□□□□□ -1.47
LIMA1-213ENST00000552720 CCL21O00585 134 aa5.86□□□□□ -1.47
LIMA1-213ENST00000552720 NUDT3O95989 172 aa5.86□□□□□ -1.47
LIMA1-213ENST00000552720 OR5AL1P0C617 328 aa5.86□□□□□ -1.47
LIMA1-213ENST00000552720 ZNF80P51504 273 aaPredicted RBP5.86□□□□□ -1.47
LIMA1-213ENST00000552720 OR11H6Q8NGC7 330 aa5.86□□□□□ -1.47
LIMA1-213ENST00000552720 PRSS3P2Q8NHM4 247 aa5.86□□□□□ -1.47
LIMA1-213ENST00000552720 ORAOV1Q8WV07 137 aa5.86□□□□□ -1.47
LIMA1-213ENST00000552720 ST20Q9HBF5 79 aa5.86□□□□□ -1.47
LIMA1-213ENST00000552720 SCRT2Q9NQ03 307 aa5.86□□□□□ -1.47
LIMA1-213ENST00000552720 AP5S1Q9NUS5 200 aa5.86□□□□□ -1.47
LIMA1-213ENST00000552720 PPP1R14DQ9NXH3 145 aa5.86□□□□□ -1.47
LIMA1-213ENST00000552720 SMKR1H3BMG3 65 aa5.85□□□□□ -1.47
LIMA1-213ENST00000552720 K7ENP7 123 aa5.85□□□□□ -1.47
LIMA1-213ENST00000552720 SH2D1AO60880 128 aa5.85□□□□□ -1.47
LIMA1-213ENST00000552720 ZNF738Q8NE65 137 aa5.85□□□□□ -1.47
LIMA1-213ENST00000552720 NPBQ8NG41 125 aa5.85□□□□□ -1.47
LIMA1-213ENST00000552720 ARPC1AQ92747 370 aa5.85□□□□□ -1.47
LIMA1-213ENST00000552720 ZNF747Q9BV97 191 aa5.85□□□□□ -1.47
LIMA1-213ENST00000552720 ODF3BA8MYP8 253 aa5.85□□□□□ -1.47
LIMA1-213ENST00000552720 NDUFS7O75251 213 aa5.85□□□□□ -1.47
LIMA1-213ENST00000552720 CT45A10P0DMU9 189 aa5.85□□□□□ -1.47
LIMA1-213ENST00000552720 PF4V1P10720 104 aa5.85□□□□□ -1.47
LIMA1-213ENST00000552720 EGR2P11161 476 aaPredicted RBP5.85□□□□□ -1.47
LIMA1-213ENST00000552720 MFAP4P55083 255 aa5.85□□□□□ -1.47
LIMA1-213ENST00000552720 SLC25A34Q6PIV7 304 aa5.85□□□□□ -1.47
LIMA1-213ENST00000552720 PET117Q6UWS5 81 aa5.85□□□□□ -1.47
LIMA1-213ENST00000552720 LYPD1Q8N2G4 141 aa5.85□□□□□ -1.47
LIMA1-213ENST00000552720 OR8A1Q8NGG7 326 aa5.85□□□□□ -1.47
LIMA1-213ENST00000552720 RNASE8Q8TDE3 154 aaKnown RBP5.85□□□□□ -1.47
LIMA1-213ENST00000552720 VGLL1Q99990 258 aa5.85□□□□□ -1.47
LIMA1-213ENST00000552720 SRSF8Q9BRL6 282 aaKnown RBP5.85□□□□□ -1.47
LIMA1-213ENST00000552720 AAMDCQ9H7C9 122 aa5.85□□□□□ -1.47
LIMA1-213ENST00000552720 C21orf62Q9NYP8 219 aa5.85□□□□□ -1.47
LIMA1-213ENST00000552720 SIGLEC8Q9NYZ4 499 aa5.85□□□□□ -1.47
LIMA1-213ENST00000552720 SMAD5-AS1Q9Y6J3 95 aa5.85□□□□□ -1.47
LIMA1-213ENST00000552720 UTP20O75691 2785 aaKnown RBP5.85□□□□□ -1.47
LIMA1-213ENST00000552720 LOC105371242A0A075B767 164 aa5.84□□□□□ -1.47
LIMA1-213ENST00000552720 TMEM189A5PLL7 270 aa5.84□□□□□ -1.47
LIMA1-213ENST00000552720 NPIPB5A8MRT5 1133 aa5.84□□□□□ -1.47
LIMA1-213ENST00000552720 IGHG4P01861 327 aa5.84□□□□□ -1.47
LIMA1-213ENST00000552720 UBE2V1Q13404 147 aa5.84□□□□□ -1.47
LIMA1-213ENST00000552720 ODF1Q14990 250 aa5.84□□□□□ -1.47
LIMA1-213ENST00000552720 BVES-AS1Q5T3Y7 98 aa5.84□□□□□ -1.47
LIMA1-213ENST00000552720 LINC01545Q5VT33 79 aa5.84□□□□□ -1.47
LIMA1-213ENST00000552720 FA2HQ7L5A8 372 aa5.84□□□□□ -1.47
LIMA1-213ENST00000552720 VMO1Q7Z5L0 202 aa5.84□□□□□ -1.47
LIMA1-213ENST00000552720 ZNF575Q86XF7 245 aa5.84□□□□□ -1.47
LIMA1-213ENST00000552720 GATD1Q8NB37 220 aa5.84□□□□□ -1.47
LIMA1-213ENST00000552720 SPTAN1Q13813 2472 aaKnown RBP5.84□□□□□ -1.47
LIMA1-213ENST00000552720 ABCA2Q9BZC7 2435 aa5.84□□□□□ -1.48
LIMA1-213ENST00000552720 IGHV3-66A0A0C4DH42 116 aa5.84□□□□□ -1.48
LIMA1-213ENST00000552720 HSBP1L1C9JCN9 74 aa5.84□□□□□ -1.48
LIMA1-213ENST00000552720 TAX1BP3O14907 124 aa5.84□□□□□ -1.48
LIMA1-213ENST00000552720 GAS8-AS1O95177 125 aa5.84□□□□□ -1.48
LIMA1-213ENST00000552720 CTSGP08311 255 aa5.84□□□□□ -1.48
LIMA1-213ENST00000552720 ZFP36P26651 326 aaKnown RBP5.84□□□□□ -1.48
LIMA1-213ENST00000552720 CEACAM3P40198 252 aa5.84□□□□□ -1.48
LIMA1-213ENST00000552720 NBL1P41271 181 aa5.84□□□□□ -1.48
LIMA1-213ENST00000552720 ADORA2A-AS1P86434 159 aa5.84□□□□□ -1.48
LIMA1-213ENST00000552720 ZNF562Q6V9R5 426 aa5.84□□□□□ -1.48
LIMA1-213ENST00000552720 WFDC3Q8IUB2 231 aa5.84□□□□□ -1.48
LIMA1-213ENST00000552720 RAB1BQ9H0U4 201 aa5.84□□□□□ -1.48
LIMA1-213ENST00000552720 MSRB1Q9NZV6 116 aa5.84□□□□□ -1.48
LIMA1-213ENST00000552720 HSPB8Q9UJY1 196 aa5.84□□□□□ -1.48
LIMA1-213ENST00000552720 RNF24Q9Y225 148 aa5.84□□□□□ -1.48
LIMA1-213ENST00000552720 IGHV3OR16-13A0A075B7E8 117 aa5.83□□□□□ -1.48
LIMA1-213ENST00000552720 IGHV3-74A0A0B4J1X5 117 aa5.83□□□□□ -1.48
LIMA1-213ENST00000552720 CBY3A6NI87 242 aa5.83□□□□□ -1.48
LIMA1-213ENST00000552720 PRTN3P24158 256 aa5.83□□□□□ -1.48
LIMA1-213ENST00000552720 MRPL51Q4U2R6 128 aaKnown RBP5.83□□□□□ -1.48
LIMA1-213ENST00000552720 ZNF493Q6ZR52 646 aa5.83□□□□□ -1.48
LIMA1-213ENST00000552720 PRR25Q96S07 402 aa5.83□□□□□ -1.48
LIMA1-213ENST00000552720 TRAV30A0A087WSZ9 112 aa5.83□□□□□ -1.48
LIMA1-213ENST00000552720 A0A1W2PPR1 153 aa5.83□□□□□ -1.48
LIMA1-213ENST00000552720 PRAC2D3DTV9 90 aa5.83□□□□□ -1.48
LIMA1-213ENST00000552720 NPYP01303 97 aa5.83□□□□□ -1.48
LIMA1-213ENST00000552720 CSN1S1P47710 185 aa5.83□□□□□ -1.48
LIMA1-213ENST00000552720 ERCC8Q13216 396 aa5.83□□□□□ -1.48
LIMA1-213ENST00000552720 FAM104BQ5XKR9 115 aa5.83□□□□□ -1.48
LIMA1-213ENST00000552720 C2orf91Q6ZV80 131 aa5.83□□□□□ -1.48
LIMA1-213ENST00000552720 TTC9CQ8N5M4 171 aa5.83□□□□□ -1.48
LIMA1-213ENST00000552720 OR10AG1Q8NH19 301 aa5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 80.9 ms