RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 SHANK2-AS3Q9BTD1 123 aa4.26□□□□□ -1.73
LIMA1-212ENST00000552491 SCNM1Q9BWG6 230 aa4.26□□□□□ -1.73
LIMA1-212ENST00000552491 SIGLEC8Q9NYZ4 499 aa4.26□□□□□ -1.73
LIMA1-212ENST00000552491 CACNA1BQ00975 2339 aa4.26□□□□□ -1.73
LIMA1-212ENST00000552491 MED13LQ71F56 2210 aa4.26□□□□□ -1.73
LIMA1-212ENST00000552491 RIF1Q5UIP0 2472 aaKnown RBP4.26□□□□□ -1.73
LIMA1-212ENST00000552491 ASH1LQ9NR48 2969 aaKnown RBP4.26□□□□□ -1.73
LIMA1-212ENST00000552491 C16orf97H3BN30 126 aa4.26□□□□□ -1.73
LIMA1-212ENST00000552491 FAM229AH3BQW9 127 aa4.26□□□□□ -1.73
LIMA1-212ENST00000552491 H3BRN7 92 aa4.26□□□□□ -1.73
LIMA1-212ENST00000552491 BUB1B-PAK6H3BSN5 160 aa4.26□□□□□ -1.73
LIMA1-212ENST00000552491 SAP30O75446 220 aa4.26□□□□□ -1.73
LIMA1-212ENST00000552491 PAX8Q06710 450 aa4.26□□□□□ -1.73
LIMA1-212ENST00000552491 PSG3Q16557 428 aa4.26□□□□□ -1.73
LIMA1-212ENST00000552491 ZNF575Q86XF7 245 aa4.26□□□□□ -1.73
LIMA1-212ENST00000552491 ZNF491Q8N8L2 437 aa4.26□□□□□ -1.73
LIMA1-212ENST00000552491 OR1N2Q8NGR9 330 aa4.26□□□□□ -1.73
LIMA1-212ENST00000552491 FAM57AQ8TBR7 257 aa4.26□□□□□ -1.73
LIMA1-212ENST00000552491 ZNF414Q96IQ9 312 aa4.26□□□□□ -1.73
LIMA1-212ENST00000552491 VPS25Q9BRG1 176 aa4.26□□□□□ -1.73
LIMA1-212ENST00000552491 SH3BGRL2Q9UJC5 107 aa4.26□□□□□ -1.73
LIMA1-212ENST00000552491 INSIG2Q9Y5U4 225 aa4.26□□□□□ -1.73
LIMA1-212ENST00000552491 SERTM2A0A1B0GWG4 89 aa4.25□□□□□ -1.73
LIMA1-212ENST00000552491 E7EQL1 145 aa4.25□□□□□ -1.73
LIMA1-212ENST00000552491 SMKR1H3BMG3 65 aa4.25□□□□□ -1.73
LIMA1-212ENST00000552491 K7ERU9 68 aa4.25□□□□□ -1.73
LIMA1-212ENST00000552491 GAS8-AS1O95177 125 aa4.25□□□□□ -1.73
LIMA1-212ENST00000552491 COX7A1P24310 79 aa4.25□□□□□ -1.73
LIMA1-212ENST00000552491 APOBEC3AP31941 199 aaPredicted RBP4.25□□□□□ -1.73
LIMA1-212ENST00000552491 TCF15Q12870 199 aa4.25□□□□□ -1.73
LIMA1-212ENST00000552491 LGALS9BQ3B8N2 356 aa4.25□□□□□ -1.73
LIMA1-212ENST00000552491 LGALS9CQ6DKI2 356 aa4.25□□□□□ -1.73
LIMA1-212ENST00000552491 LYZL1Q6UWQ5 148 aa4.25□□□□□ -1.73
LIMA1-212ENST00000552491 SMIM15Q7Z3B0 74 aa4.25□□□□□ -1.73
LIMA1-212ENST00000552491 RABAC1Q9UI14 185 aa4.25□□□□□ -1.73
LIMA1-212ENST00000552491 HILPDAQ9Y5L2 63 aa4.25□□□□□ -1.73
LIMA1-212ENST00000552491 U3KQK5 164 aa4.25□□□□□ -1.73
LIMA1-212ENST00000552491 GAGE10A6NGK3 116 aa4.25□□□□□ -1.73
LIMA1-212ENST00000552491 VSTM5A8MXK1 200 aa4.25□□□□□ -1.73
LIMA1-212ENST00000552491 IL4P05112 153 aa4.25□□□□□ -1.73
LIMA1-212ENST00000552491 FCGR2BP31994 310 aaPredicted RBP4.25□□□□□ -1.73
LIMA1-212ENST00000552491 CACNG7P62955 275 aa4.25□□□□□ -1.73
LIMA1-212ENST00000552491 NHLH1Q02575 133 aa4.25□□□□□ -1.73
LIMA1-212ENST00000552491 MRPL51Q4U2R6 128 aaKnown RBP4.25□□□□□ -1.73
LIMA1-212ENST00000552491 UFSP1Q6NVU6 142 aa4.25□□□□□ -1.73
LIMA1-212ENST00000552491 PRSS57Q6UWY2 283 aa4.25□□□□□ -1.73
LIMA1-212ENST00000552491 WFDC3Q8IUB2 231 aa4.25□□□□□ -1.73
LIMA1-212ENST00000552491 PCP2Q8IVA1 136 aa4.25□□□□□ -1.73
LIMA1-212ENST00000552491 BOD1L2Q8IYS8 172 aa4.25□□□□□ -1.73
LIMA1-212ENST00000552491 SRSF8Q9BRL6 282 aaKnown RBP4.25□□□□□ -1.73
LIMA1-212ENST00000552491 PIEZO1Q92508 2521 aa4.25□□□□□ -1.73
LIMA1-212ENST00000552491 ZNF292O60281 2723 aa4.24□□□□□ -1.73
LIMA1-212ENST00000552491 IGKV2-40A0A087WW87 121 aaPredicted RBP4.24□□□□□ -1.73
LIMA1-212ENST00000552491 A6NDN8 102 aa4.24□□□□□ -1.73
LIMA1-212ENST00000552491 SHISA9B4DS77 424 aa4.24□□□□□ -1.73
LIMA1-212ENST00000552491 H3BRM9 83 aa4.24□□□□□ -1.73
LIMA1-212ENST00000552491 SH2D1AO60880 128 aa4.24□□□□□ -1.73
LIMA1-212ENST00000552491 IGKV2D-40P01614 121 aaPredicted RBP4.24□□□□□ -1.73
LIMA1-212ENST00000552491 CT45A10P0DMU9 189 aa4.24□□□□□ -1.73
LIMA1-212ENST00000552491 S100A7P31151 101 aa4.24□□□□□ -1.73
LIMA1-212ENST00000552491 FAM104BQ5XKR9 115 aa4.24□□□□□ -1.73
LIMA1-212ENST00000552491 RNF125Q96EQ8 232 aa4.24□□□□□ -1.73
LIMA1-212ENST00000552491 PRELID3AQ96N28 172 aa4.24□□□□□ -1.73
LIMA1-212ENST00000552491 RNF5Q99942 180 aa4.24□□□□□ -1.73
LIMA1-212ENST00000552491 C9orf118A6NHY6 69 aa4.24□□□□□ -1.73
LIMA1-212ENST00000552491 F8W735 103 aaPredicted RBP4.24□□□□□ -1.73
LIMA1-212ENST00000552491 LY6LH3BQJ8 138 aa4.24□□□□□ -1.73
LIMA1-212ENST00000552491 SIVA1O15304 175 aa4.24□□□□□ -1.73
LIMA1-212ENST00000552491 NPYP01303 97 aa4.24□□□□□ -1.73
LIMA1-212ENST00000552491 ZNF80P51504 273 aaPredicted RBP4.24□□□□□ -1.73
LIMA1-212ENST00000552491 IGFL4Q6B9Z1 124 aa4.24□□□□□ -1.73
LIMA1-212ENST00000552491 ADAMTSL5Q6ZMM2 481 aa4.24□□□□□ -1.73
LIMA1-212ENST00000552491 GTF2H5Q6ZYL4 71 aa4.24□□□□□ -1.73
LIMA1-212ENST00000552491 ORMDL3Q8N138 153 aa4.24□□□□□ -1.73
LIMA1-212ENST00000552491 OR9G4Q8NGQ1 327 aa4.24□□□□□ -1.73
LIMA1-212ENST00000552491 THYN1Q9P016 225 aa4.24□□□□□ -1.73
LIMA1-212ENST00000552491 DKK2Q9UBU2 259 aa4.24□□□□□ -1.73
LIMA1-212ENST00000552491 RALYQ9UKM9 306 aaKnown RBP4.24□□□□□ -1.73
LIMA1-212ENST00000552491 WI2-2373I1.2A0A1W2PRP0 233 aa4.23□□□□□ -1.73
LIMA1-212ENST00000552491 TMEM189A5PLL7 270 aa4.23□□□□□ -1.73
LIMA1-212ENST00000552491 TIMM23O14925 209 aa4.23□□□□□ -1.73
LIMA1-212ENST00000552491 CNIH1O95406 144 aa4.23□□□□□ -1.73
LIMA1-212ENST00000552491 EGR2P11161 476 aaPredicted RBP4.23□□□□□ -1.73
LIMA1-212ENST00000552491 HLA-DMBP28068 263 aa4.23□□□□□ -1.73
LIMA1-212ENST00000552491 NBL1P41271 181 aa4.23□□□□□ -1.73
LIMA1-212ENST00000552491 PDE6HQ13956 83 aa4.23□□□□□ -1.73
LIMA1-212ENST00000552491 PLGLAQ15195 96 aa4.23□□□□□ -1.73
LIMA1-212ENST00000552491 IGF2-ASQ6U949 168 aa4.23□□□□□ -1.73
LIMA1-212ENST00000552491 GFRALQ6UXV0 394 aa4.23□□□□□ -1.73
LIMA1-212ENST00000552491 S100A7AQ86SG5 101 aa4.23□□□□□ -1.73
LIMA1-212ENST00000552491 Q8TAT8 98 aa4.23□□□□□ -1.73
LIMA1-212ENST00000552491 RPEQ96AT9 228 aa4.23□□□□□ -1.73
LIMA1-212ENST00000552491 AP1S3Q96PC3 154 aa4.23□□□□□ -1.73
LIMA1-212ENST00000552491 TTTY13Q9BZ97 58 aa4.23□□□□□ -1.73
LIMA1-212ENST00000552491 CSTL1Q9H114 145 aa4.23□□□□□ -1.73
LIMA1-212ENST00000552491 DYNLRB1Q9NP97 96 aa4.23□□□□□ -1.73
LIMA1-212ENST00000552491 MSRB1Q9NZV6 116 aa4.23□□□□□ -1.73
LIMA1-212ENST00000552491 A1L4Q6 167 aa4.23□□□□□ -1.73
LIMA1-212ENST00000552491 H3BUT2 72 aa4.23□□□□□ -1.73
LIMA1-212ENST00000552491 SMAD7O15105 426 aaKnown RBP4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 96.6 ms