RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 IGKV3D-15A0A087WSY6 115 aa4.42□□□□□ -1.7
LIMA1-203ENST00000547825 OR11H12B2RN74 326 aa4.42□□□□□ -1.7
LIMA1-203ENST00000547825 C21orf140B9A014 251 aa4.42□□□□□ -1.7
LIMA1-203ENST00000547825 D6R8Y8 96 aa4.42□□□□□ -1.7
LIMA1-203ENST00000547825 IGKV3-15P01624 115 aa4.42□□□□□ -1.7
LIMA1-203ENST00000547825 IGHV1-2P23083 117 aa4.42□□□□□ -1.7
LIMA1-203ENST00000547825 LEPP41159 167 aa4.42□□□□□ -1.7
LIMA1-203ENST00000547825 HIST2H2BCQ6DN03 193 aa4.42□□□□□ -1.7
LIMA1-203ENST00000547825 HIST2H2BDQ6DRA6 164 aa4.42□□□□□ -1.7
LIMA1-203ENST00000547825 CLEC2AQ6UVW9 174 aa4.42□□□□□ -1.7
LIMA1-203ENST00000547825 AMTNQ6UX39 209 aa4.42□□□□□ -1.7
LIMA1-203ENST00000547825 ASCL4Q6XD76 172 aa4.42□□□□□ -1.7
LIMA1-203ENST00000547825 ORMDL3Q8N138 153 aa4.42□□□□□ -1.7
LIMA1-203ENST00000547825 OR11H1Q8NG94 326 aa4.42□□□□□ -1.7
LIMA1-203ENST00000547825 OR11H2Q8NH07 326 aa4.42□□□□□ -1.7
LIMA1-203ENST00000547825 IFI27L1Q96BM0 104 aa4.42□□□□□ -1.7
LIMA1-203ENST00000547825 ANKHD1Q8IWZ3 2542 aaKnown RBP4.42□□□□□ -1.7
LIMA1-203ENST00000547825 IGLV3-32A0A0A0MS00 114 aa4.41□□□□□ -1.7
LIMA1-203ENST00000547825 C9JCJ5 164 aa4.41□□□□□ -1.7
LIMA1-203ENST00000547825 K7EP13 123 aa4.41□□□□□ -1.7
LIMA1-203ENST00000547825 M0R381 172 aa4.41□□□□□ -1.7
LIMA1-203ENST00000547825 ESDP10768 282 aa4.41□□□□□ -1.7
LIMA1-203ENST00000547825 IFI27P40305 119 aaPredicted RBP4.41□□□□□ -1.7
LIMA1-203ENST00000547825 IGFL3Q6UXB1 125 aa4.41□□□□□ -1.7
LIMA1-203ENST00000547825 ZNF479Q96JC4 524 aa4.41□□□□□ -1.7
LIMA1-203ENST00000547825 C19orf24Q9BVV8 132 aa4.41□□□□□ -1.7
LIMA1-203ENST00000547825 MRPL32Q9BYC8 188 aaKnown RBP4.41□□□□□ -1.7
LIMA1-203ENST00000547825 MRPS18CQ9Y3D5 142 aaKnown RBP4.41□□□□□ -1.7
LIMA1-203ENST00000547825 PDZD2O15018 2839 aa4.41□□□□□ -1.7
LIMA1-203ENST00000547825 TRGV8A0A0C4DH27 118 aa4.41□□□□□ -1.7
LIMA1-203ENST00000547825 KBTBD11-OT1A0A1B0GTJ5 212 aa4.41□□□□□ -1.7
LIMA1-203ENST00000547825 PMS2P5A8MQ11 134 aa4.41□□□□□ -1.7
LIMA1-203ENST00000547825 UPK2O00526 184 aa4.41□□□□□ -1.7
LIMA1-203ENST00000547825 PAX2Q02962 417 aa4.41□□□□□ -1.7
LIMA1-203ENST00000547825 MEF2CQ06413 473 aaPredicted RBP4.41□□□□□ -1.7
LIMA1-203ENST00000547825 TTC32Q5I0X7 151 aa4.41□□□□□ -1.7
LIMA1-203ENST00000547825 KLF17Q5JT82 389 aaPredicted RBP4.41□□□□□ -1.7
LIMA1-203ENST00000547825 OR4A5Q8NH83 315 aa4.41□□□□□ -1.7
LIMA1-203ENST00000547825 PROK2Q9HC23 129 aa4.41□□□□□ -1.7
LIMA1-203ENST00000547825 SOX21Q9Y651 276 aaPredicted RBP4.41□□□□□ -1.7
LIMA1-203ENST00000547825 FBN2P35556 2912 aa4.41□□□□□ -1.7
LIMA1-203ENST00000547825 CD5LO43866 347 aa4.41□□□□□ -1.7
LIMA1-203ENST00000547825 ARMS2P0C7Q2 107 aa4.41□□□□□ -1.7
LIMA1-203ENST00000547825 MED14OSP0DP75 135 aa4.41□□□□□ -1.7
LIMA1-203ENST00000547825 TMPRSS3P57727 454 aa4.41□□□□□ -1.7
LIMA1-203ENST00000547825 CKS1BP61024 79 aa4.41□□□□□ -1.7
LIMA1-203ENST00000547825 SRSF1Q07955 248 aaKnown RBP eCLIP4.41□□□□□ -1.7
LIMA1-203ENST00000547825 Q0VFX4 171 aa4.41□□□□□ -1.7
LIMA1-203ENST00000547825 AMN1Q8IY45 258 aa4.41□□□□□ -1.7
LIMA1-203ENST00000547825 ZNF843Q8N446 348 aa4.41□□□□□ -1.7
LIMA1-203ENST00000547825 CD177Q8N6Q3 437 aa4.41□□□□□ -1.7
LIMA1-203ENST00000547825 UTP20O75691 2785 aaKnown RBP4.41□□□□□ -1.7
LIMA1-203ENST00000547825 CHD8Q9HCK8 2581 aa4.41□□□□□ -1.7
LIMA1-203ENST00000547825 TRGV11A0A075B6L2 103 aa4.4□□□□□ -1.7
LIMA1-203ENST00000547825 TMEM238C9JI98 176 aa4.4□□□□□ -1.7
LIMA1-203ENST00000547825 K7ERJ3 54 aa4.4□□□□□ -1.7
LIMA1-203ENST00000547825 CFHR2P36980 270 aa4.4□□□□□ -1.7
LIMA1-203ENST00000547825 UCNP55089 124 aa4.4□□□□□ -1.7
LIMA1-203ENST00000547825 SEC11AP67812 179 aa4.4□□□□□ -1.7
LIMA1-203ENST00000547825 FAM27E3Q08E93 113 aa4.4□□□□□ -1.7
LIMA1-203ENST00000547825 BVES-AS1Q5T3Y7 98 aa4.4□□□□□ -1.7
LIMA1-203ENST00000547825 TMEM170BQ5T4T1 132 aa4.4□□□□□ -1.7
LIMA1-203ENST00000547825 ADAMTSL5Q6ZMM2 481 aa4.4□□□□□ -1.7
LIMA1-203ENST00000547825 GCSAMQ8N6F7 178 aa4.4□□□□□ -1.7
LIMA1-203ENST00000547825 LINC00470Q9BZP3 86 aa4.4□□□□□ -1.7
LIMA1-203ENST00000547825 CYSLTR1Q9Y271 337 aa4.4□□□□□ -1.7
LIMA1-203ENST00000547825 TSSC4Q9Y5U2 329 aaPredicted RBP4.4□□□□□ -1.7
LIMA1-203ENST00000547825 TANC2Q9HCD6 1990 aa4.4□□□□□ -1.7
LIMA1-203ENST00000547825 COL12A1Q99715 3063 aa4.4□□□□□ -1.7
LIMA1-203ENST00000547825 IGHV2-26A0A0B4J1V2 119 aa4.4□□□□□ -1.7
LIMA1-203ENST00000547825 CDKN1BP46527 198 aa4.4□□□□□ -1.7
LIMA1-203ENST00000547825 EMP1P54849 157 aa4.4□□□□□ -1.7
LIMA1-203ENST00000547825 Q8TAT8 98 aa4.4□□□□□ -1.7
LIMA1-203ENST00000547825 RAB1CQ92928 201 aa4.4□□□□□ -1.7
LIMA1-203ENST00000547825 RPUSD1Q9UJJ7 312 aaKnown RBP4.4□□□□□ -1.7
LIMA1-203ENST00000547825 TLN2Q9Y4G6 2542 aa4.4□□□□□ -1.7
LIMA1-203ENST00000547825 MLNRO43193 412 aa4.4□□□□□ -1.71
LIMA1-203ENST00000547825 IGLV2-14P01704 120 aa4.4□□□□□ -1.71
LIMA1-203ENST00000547825 WNT2P09544 360 aa4.4□□□□□ -1.71
LIMA1-203ENST00000547825 ANXA2RQ3ZCQ2 193 aa4.4□□□□□ -1.71
LIMA1-203ENST00000547825 ZC2HC1BQ5TFG8 222 aa4.4□□□□□ -1.71
LIMA1-203ENST00000547825 FAM74A4Q5TZK3 123 aa4.4□□□□□ -1.71
LIMA1-203ENST00000547825 GLMPQ8WWB7 406 aa4.4□□□□□ -1.71
LIMA1-203ENST00000547825 RABAC1Q9UI14 185 aa4.4□□□□□ -1.71
LIMA1-203ENST00000547825 TLN1Q9Y490 2541 aaKnown RBP4.4□□□□□ -1.71
LIMA1-203ENST00000547825 IGLC7A0M8Q6 106 aa4.4□□□□□ -1.71
LIMA1-203ENST00000547825 NPIPB6E9PJ23 425 aa4.4□□□□□ -1.71
LIMA1-203ENST00000547825 YPEL1O60688 119 aa4.4□□□□□ -1.71
LIMA1-203ENST00000547825 IGKV3-20P01619 116 aa4.4□□□□□ -1.71
LIMA1-203ENST00000547825 HBDP02042 147 aa4.4□□□□□ -1.71
LIMA1-203ENST00000547825 TCRAP04437 139 aa4.4□□□□□ -1.71
LIMA1-203ENST00000547825 PDLIM4P50479 330 aa4.4□□□□□ -1.71
LIMA1-203ENST00000547825 WDR86Q86TI4 376 aa4.4□□□□□ -1.71
LIMA1-203ENST00000547825 DTX2Q86UW9 622 aa4.4□□□□□ -1.71
LIMA1-203ENST00000547825 TIMD4Q96H15 378 aa4.4□□□□□ -1.71
LIMA1-203ENST00000547825 YPEL2Q96QA6 119 aa4.4□□□□□ -1.71
LIMA1-203ENST00000547825 TTTY13Q9BZ97 58 aa4.4□□□□□ -1.71
LIMA1-203ENST00000547825 MRPL27Q9P0M9 148 aaKnown RBP4.4□□□□□ -1.71
LIMA1-203ENST00000547825 PSG8Q9UQ74 426 aa4.4□□□□□ -1.71
LIMA1-203ENST00000547825 NCOR2Q9Y618 2525 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms