RNA–Protein interactions for RNA: ENST00000542001.5

VARS2-212, Transcript of valyl-tRNA synthetase 2, mitochondrial, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VARS2, Length 4,064 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2-212ENST00000542001 ITGB1BP1O14713 200 aa12.84□□□□□ -0.35
VARS2-212ENST00000542001 IFI27P40305 119 aaPredicted RBP12.84□□□□□ -0.35
VARS2-212ENST00000542001 SHISA9B4DS77 424 aa12.84□□□□□ -0.35
VARS2-212ENST00000542001 TDGF1P3P51864 188 aa12.84□□□□□ -0.35
VARS2-212ENST00000542001 VWC2Q2TAL6 325 aa12.84□□□□□ -0.35
VARS2-212ENST00000542001 ALKBH7Q9BT30 221 aaPredicted RBP12.84□□□□□ -0.35
VARS2-212ENST00000542001 A6NDN8 102 aa12.83□□□□□ -0.35
VARS2-212ENST00000542001 Q86TA4 180 aa12.83□□□□□ -0.35
VARS2-212ENST00000542001 STPG4Q8N801 248 aa12.83□□□□□ -0.35
VARS2-212ENST00000542001 K7ERU9 68 aa12.83□□□□□ -0.36
VARS2-212ENST00000542001 PIMREGQ9BSJ6 248 aa12.83□□□□□ -0.36
VARS2-212ENST00000542001 SH2D1AO60880 128 aa12.83□□□□□ -0.36
VARS2-212ENST00000542001 SFTPCP11686 197 aa12.83□□□□□ -0.36
VARS2-212ENST00000542001 YPEL3P61236 119 aaPredicted RBP12.83□□□□□ -0.36
VARS2-212ENST00000542001 LDLRAD2Q5SZI1 272 aa12.83□□□□□ -0.36
VARS2-212ENST00000542001 LOC107984156A0A0G2JMH3 177 aa12.82□□□□□ -0.36
VARS2-212ENST00000542001 Q5PR19 223 aa12.82□□□□□ -0.36
VARS2-212ENST00000542001 DGAT2L7PQ6IED9 249 aa12.82□□□□□ -0.36
VARS2-212ENST00000542001 ARL17AQ8IVW1 177 aa12.82□□□□□ -0.36
VARS2-212ENST00000542001 TNFRSF14Q92956 283 aa12.82□□□□□ -0.36
VARS2-212ENST00000542001 HIST1H4GQ99525 98 aa12.82□□□□□ -0.36
VARS2-212ENST00000542001 H3BUX3 64 aa12.82□□□□□ -0.36
VARS2-212ENST00000542001 IGLC1P0CG04 106 aa12.82□□□□□ -0.36
VARS2-212ENST00000542001 BEND2Q8NDZ0 799 aa12.82□□□□□ -0.36
VARS2-212ENST00000542001 ZNF256Q9Y2P7 627 aaPredicted RBP12.82□□□□□ -0.36
VARS2-212ENST00000542001 SMAD7O15105 426 aaKnown RBP12.81□□□□□ -0.36
VARS2-212ENST00000542001 P0C879 139 aa12.81□□□□□ -0.36
VARS2-212ENST00000542001 TSPOP30536 169 aa12.81□□□□□ -0.36
VARS2-212ENST00000542001 PYGO2Q9BRQ0 406 aa12.81□□□□□ -0.36
VARS2-212ENST00000542001 H3BUT2 72 aa12.8□□□□□ -0.36
VARS2-212ENST00000542001 ATP6V0E1O15342 81 aa12.8□□□□□ -0.36
VARS2-212ENST00000542001 TOMM40O96008 361 aa12.8□□□□□ -0.36
VARS2-212ENST00000542001 ZNF56Q15929 161 aa12.8□□□□□ -0.36
VARS2-212ENST00000542001 LINC00173Q6ZV60 143 aa12.8□□□□□ -0.36
VARS2-212ENST00000542001 LY96Q9Y6Y9 160 aa12.8□□□□□ -0.36
VARS2-212ENST00000542001 ACANP16112 2415 aa12.8□□□□□ -0.36
VARS2-212ENST00000542001 PRTN3P24158 256 aa12.8□□□□□ -0.36
VARS2-212ENST00000542001 FAM120AOSQ5T036 256 aa12.8□□□□□ -0.36
VARS2-212ENST00000542001 FAM159AQ6UWV7 190 aa12.8□□□□□ -0.36
VARS2-212ENST00000542001 OR1N2Q8NGR9 330 aa12.8□□□□□ -0.36
VARS2-212ENST00000542001 C11orf52Q96A22 123 aa12.8□□□□□ -0.36
VARS2-212ENST00000542001 PSG3Q16557 428 aa12.79□□□□□ -0.36
VARS2-212ENST00000542001 POU2AF1Q16633 256 aa12.79□□□□□ -0.36
VARS2-212ENST00000542001 ZC2HC1AQ96GY0 325 aa12.79□□□□□ -0.36
VARS2-212ENST00000542001 FASNP49327 2511 aaKnown RBP12.79□□□□□ -0.36
VARS2-212ENST00000542001 SYS1-DBNDD2H3BUS1 97 aa12.79□□□□□ -0.36
VARS2-212ENST00000542001 RPS20P60866 119 aaKnown RBP12.79□□□□□ -0.36
VARS2-212ENST00000542001 JMJD8Q96S16 334 aa12.79□□□□□ -0.36
VARS2-212ENST00000542001 SHANK2-AS3Q9BTD1 123 aa12.79□□□□□ -0.36
VARS2-212ENST00000542001 PRSS2P07478 247 aa12.79□□□□□ -0.36
VARS2-212ENST00000542001 FAM106AQ4KMX7 169 aa12.79□□□□□ -0.36
VARS2-212ENST00000542001 IFI27L1Q96BM0 104 aa12.79□□□□□ -0.36
VARS2-212ENST00000542001 CPAMD8Q8IZJ3 1885 aa12.78□□□□□ -0.36
VARS2-212ENST00000542001 EMP1P54849 157 aa12.78□□□□□ -0.36
VARS2-212ENST00000542001 Q0VG73 95 aa12.78□□□□□ -0.36
VARS2-212ENST00000542001 EBLN2Q6P2I7 272 aa12.78□□□□□ -0.36
VARS2-212ENST00000542001 DYNLRB2Q8TF09 96 aa12.78□□□□□ -0.36
VARS2-212ENST00000542001 A0A1W2PRX2 142 aa12.78□□□□□ -0.36
VARS2-212ENST00000542001 PAX8Q06710 450 aa12.78□□□□□ -0.36
VARS2-212ENST00000542001 ZNF503Q96F45 646 aa12.78□□□□□ -0.36
VARS2-212ENST00000542001 FAM167A-AS1Q96KT0 104 aa12.78□□□□□ -0.36
VARS2-212ENST00000542001 TRBV19A0A075B6N1 114 aa12.78□□□□□ -0.36
VARS2-212ENST00000542001 IGLL1P15814 213 aa12.78□□□□□ -0.36
VARS2-212ENST00000542001 GTSCR1Q86UQ5 136 aa12.78□□□□□ -0.36
VARS2-212ENST00000542001 ZNF688P0C7X2 276 aa12.77□□□□□ -0.36
VARS2-212ENST00000542001 PSMB2P49721 201 aa12.77□□□□□ -0.36
VARS2-212ENST00000542001 RIPPLY3P57055 190 aa12.77□□□□□ -0.36
VARS2-212ENST00000542001 TMEM170BQ5T4T1 132 aa12.77□□□□□ -0.36
VARS2-212ENST00000542001 VGLL1Q99990 258 aa12.77□□□□□ -0.36
VARS2-212ENST00000542001 GUSBP1Q15486 140 aa12.77□□□□□ -0.37
VARS2-212ENST00000542001 FNDC10F2Z333 226 aa12.77□□□□□ -0.37
VARS2-212ENST00000542001 AMMECR1LQ6DCA0 310 aa12.77□□□□□ -0.37
VARS2-212ENST00000542001 ZNF562Q6V9R5 426 aa12.77□□□□□ -0.37
VARS2-212ENST00000542001 TRAV41A0A0B4J266 112 aa12.76□□□□□ -0.37
VARS2-212ENST00000542001 IGKV1-17P01599 117 aa12.76□□□□□ -0.37
VARS2-212ENST00000542001 HBDP02042 147 aa12.76□□□□□ -0.37
VARS2-212ENST00000542001 ID1P41134 155 aa12.76□□□□□ -0.37
VARS2-212ENST00000542001 TMEM249Q2WGJ8 235 aa12.76□□□□□ -0.37
VARS2-212ENST00000542001 Q8NA96 180 aa12.76□□□□□ -0.37
VARS2-212ENST00000542001 SOX21Q9Y651 276 aaPredicted RBP12.76□□□□□ -0.37
VARS2-212ENST00000542001 ATG2AQ2TAZ0 1938 aa12.76□□□□□ -0.37
VARS2-212ENST00000542001 EFNA4P52798 201 aa12.76□□□□□ -0.37
VARS2-212ENST00000542001 PRSS57Q6UWY2 283 aa12.76□□□□□ -0.37
VARS2-212ENST00000542001 SCGB3A1Q96QR1 104 aa12.76□□□□□ -0.37
VARS2-212ENST00000542001 CD7P09564 240 aa12.76□□□□□ -0.37
VARS2-212ENST00000542001 ATP5L2Q7Z4Y8 100 aa12.76□□□□□ -0.37
VARS2-212ENST00000542001 ZNF491Q8N8L2 437 aa12.75□□□□□ -0.37
VARS2-212ENST00000542001 IGKV3OR2-268A0A0C4DH90 116 aa12.75□□□□□ -0.37
VARS2-212ENST00000542001 CEACAM4O75871 244 aa12.75□□□□□ -0.37
VARS2-212ENST00000542001 COL25A1Q9BXS0 654 aaPredicted RBP12.75□□□□□ -0.37
VARS2-212ENST00000542001 NHP2Q9NX24 153 aaKnown RBP12.75□□□□□ -0.37
VARS2-212ENST00000542001 TP73-AS1Q9UF72 201 aa12.75□□□□□ -0.37
VARS2-212ENST00000542001 TRAV26-2A0A0B4J265 109 aa12.75□□□□□ -0.37
VARS2-212ENST00000542001 SMIM27A0A1W2PRY6 76 aa12.75□□□□□ -0.37
VARS2-212ENST00000542001 CGB3P0DN86 165 aa12.75□□□□□ -0.37
VARS2-212ENST00000542001 CGB7P0DN87 165 aa12.75□□□□□ -0.37
VARS2-212ENST00000542001 C14orf178Q8N769 122 aaPredicted RBP12.75□□□□□ -0.37
VARS2-212ENST00000542001 NPFFO15130 113 aa12.74□□□□□ -0.37
VARS2-212ENST00000542001 IGLC2P0DOY2 106 aa12.74□□□□□ -0.37
VARS2-212ENST00000542001 IGLC3P0DOY3 106 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms