RNA–Protein interactions for RNA: ENST00000541169.1

VPS33A-205, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 594 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-205ENST00000541169 ARL6IP6Q8N6S5 226 aa13.78□□□□□ -0.2
VPS33A-205ENST00000541169 OR4B1Q8NGF8 309 aa13.78□□□□□ -0.2
VPS33A-205ENST00000541169 TMEM167BQ9NRX6 74 aa13.78□□□□□ -0.2
VPS33A-205ENST00000541169 CSN1S1P47710 185 aa13.77□□□□□ -0.21
VPS33A-205ENST00000541169 SLC51BQ86UW2 128 aa13.77□□□□□ -0.21
VPS33A-205ENST00000541169 RXFP4Q8TDU9 374 aa13.77□□□□□ -0.21
VPS33A-205ENST00000541169 ZNF503Q96F45 646 aa13.77□□□□□ -0.21
VPS33A-205ENST00000541169 ARL14EPLP0DKL9 152 aa13.76□□□□□ -0.21
VPS33A-205ENST00000541169 RAB5CP51148 216 aa13.76□□□□□ -0.21
VPS33A-205ENST00000541169 CNN1P51911 297 aaKnown RBP13.76□□□□□ -0.21
VPS33A-205ENST00000541169 GDF5OSQ5U4N7 250 aa13.76□□□□□ -0.21
VPS33A-205ENST00000541169 IGFL4Q6B9Z1 124 aa13.76□□□□□ -0.21
VPS33A-205ENST00000541169 OVOL2Q9BRP0 275 aa13.76□□□□□ -0.21
VPS33A-205ENST00000541169 PPP1R14DQ9NXH3 145 aa13.76□□□□□ -0.21
VPS33A-205ENST00000541169 H3BTX0 84 aa13.75□□□□□ -0.21
VPS33A-205ENST00000541169 SNRPCP09234 159 aaKnown RBP13.75□□□□□ -0.21
VPS33A-205ENST00000541169 DEFB135Q30KP9 77 aa13.75□□□□□ -0.21
VPS33A-205ENST00000541169 SUN5Q8TC36 379 aa13.75□□□□□ -0.21
VPS33A-205ENST00000541169 F6UB75 175 aa13.74□□□□□ -0.21
VPS33A-205ENST00000541169 GCHFRP30047 84 aa13.74□□□□□ -0.21
VPS33A-205ENST00000541169 TSPOP30536 169 aa13.74□□□□□ -0.21
VPS33A-205ENST00000541169 RANP62826 216 aaKnown RBP13.74□□□□□ -0.21
VPS33A-205ENST00000541169 HIST1H1AQ02539 215 aaPredicted RBP13.74□□□□□ -0.21
VPS33A-205ENST00000541169 ICAM4Q14773 271 aa13.74□□□□□ -0.21
VPS33A-205ENST00000541169 ODF3Q96PU9 254 aa13.74□□□□□ -0.21
VPS33A-205ENST00000541169 NKX6-2Q9C056 277 aaPredicted RBP13.74□□□□□ -0.21
VPS33A-205ENST00000541169 OTORQ9NRC9 128 aa13.74□□□□□ -0.21
VPS33A-205ENST00000541169 AGRNO00468 2067 aa13.73□□□□□ -0.21
VPS33A-205ENST00000541169 RBAKDNA6NC62 111 aa13.73□□□□□ -0.21
VPS33A-205ENST00000541169 HLA-DMBP28068 263 aa13.73□□□□□ -0.21
VPS33A-205ENST00000541169 C9orf62Q8N4C0 152 aa13.73□□□□□ -0.21
VPS33A-205ENST00000541169 PHYHIPLQ96FC7 376 aa13.73□□□□□ -0.21
VPS33A-205ENST00000541169 LINC00477Q96M19 166 aa13.73□□□□□ -0.21
VPS33A-205ENST00000541169 Q9H3A6 140 aa13.73□□□□□ -0.21
VPS33A-205ENST00000541169 TGP01266 2768 aa13.72□□□□□ -0.21
VPS33A-205ENST00000541169 PRKDCP78527 4128 aaKnown RBP13.72□□□□□ -0.21
VPS33A-205ENST00000541169 ZNF705FA8MVS1 300 aaPredicted RBP13.72□□□□□ -0.21
VPS33A-205ENST00000541169 SLC25A5P05141 298 aaKnown RBP13.72□□□□□ -0.21
VPS33A-205ENST00000541169 GIG44P09565 113 aaPredicted RBP13.72□□□□□ -0.21
VPS33A-205ENST00000541169 AMTNQ6UX39 209 aa13.72□□□□□ -0.21
VPS33A-205ENST00000541169 EXOC3-AS1Q8N2X6 119 aa13.72□□□□□ -0.21
VPS33A-205ENST00000541169 CMTM2Q8TAZ6 248 aa13.72□□□□□ -0.21
VPS33A-205ENST00000541169 RARRES2Q99969 163 aa13.72□□□□□ -0.21
VPS33A-205ENST00000541169 SERTM2A0A1B0GWG4 89 aa13.71□□□□□ -0.21
VPS33A-205ENST00000541169 NPIPB6E9PJ23 425 aa13.71□□□□□ -0.21
VPS33A-205ENST00000541169 BOLA2-SMG1P6H3BVE0 249 aa13.71□□□□□ -0.21
VPS33A-205ENST00000541169 HMGB3O15347 200 aaKnown RBP13.71□□□□□ -0.21
VPS33A-205ENST00000541169 IGKV3-20P01619 116 aa13.71□□□□□ -0.21
VPS33A-205ENST00000541169 CSNK1G2-AS1Q8NCQ2 148 aa13.71□□□□□ -0.21
VPS33A-205ENST00000541169 TMED6Q8WW62 240 aa13.71□□□□□ -0.21
VPS33A-205ENST00000541169 COL7A1Q02388 2944 aa13.7□□□□□ -0.22
VPS33A-205ENST00000541169 TRBV7-9A0A0J9YWB2 115 aa13.7□□□□□ -0.22
VPS33A-205ENST00000541169 A0A1W2PRE2 83 aa13.7□□□□□ -0.22
VPS33A-205ENST00000541169 MAP1LC3B2A6NCE7 125 aa13.7□□□□□ -0.22
VPS33A-205ENST00000541169 SMIM9A6NGZ8 99 aa13.7□□□□□ -0.22
VPS33A-205ENST00000541169 TEX46H3BTG2 121 aa13.7□□□□□ -0.22
VPS33A-205ENST00000541169 NMBP08949 121 aa13.7□□□□□ -0.22
VPS33A-205ENST00000541169 DEFB1P60022 68 aa13.7□□□□□ -0.22
VPS33A-205ENST00000541169 CD300CQ08708 224 aa13.7□□□□□ -0.22
VPS33A-205ENST00000541169 C9orf47Q6ZRZ4 202 aa13.7□□□□□ -0.22
VPS33A-205ENST00000541169 OR11H2Q8NH07 326 aa13.7□□□□□ -0.22
VPS33A-205ENST00000541169 WWC2-AS2Q96NR7 200 aa13.7□□□□□ -0.22
VPS33A-205ENST00000541169 MAP1LC3BQ9GZQ8 125 aa13.7□□□□□ -0.22
VPS33A-205ENST00000541169 XCL2Q9UBD3 114 aa13.7□□□□□ -0.22
VPS33A-205ENST00000541169 GOLT1BQ9Y3E0 138 aa13.7□□□□□ -0.22
VPS33A-205ENST00000541169 PGPA6NDG6 321 aa13.69□□□□□ -0.22
VPS33A-205ENST00000541169 M0R3E3 92 aa13.69□□□□□ -0.22
VPS33A-205ENST00000541169 MIFP14174 115 aa13.69□□□□□ -0.22
VPS33A-205ENST00000541169 LEPP41159 167 aa13.69□□□□□ -0.22
VPS33A-205ENST00000541169 CDKN1BP46527 198 aa13.69□□□□□ -0.22
VPS33A-205ENST00000541169 PPT1P50897 306 aa13.69□□□□□ -0.22
VPS33A-205ENST00000541169 ZNF726P1Q15940 193 aa13.69□□□□□ -0.22
VPS33A-205ENST00000541169 TMEM78Q5T7P6 136 aa13.69□□□□□ -0.22
VPS33A-205ENST00000541169 TMEM256Q8N2U0 113 aa13.69□□□□□ -0.22
VPS33A-205ENST00000541169 IL17DQ8TAD2 202 aa13.69□□□□□ -0.22
VPS33A-205ENST00000541169 MBD3L1Q8WWY6 194 aa13.69□□□□□ -0.22
VPS33A-205ENST00000541169 IGF2BP2-AS1Q96M15 143 aa13.69□□□□□ -0.22
VPS33A-205ENST00000541169 NEU1Q99519 415 aa13.69□□□□□ -0.22
VPS33A-205ENST00000541169 C20orf144Q9BQM9 153 aa13.69□□□□□ -0.22
VPS33A-205ENST00000541169 SLC35B3Q9H1N7 401 aa13.69□□□□□ -0.22
VPS33A-205ENST00000541169 RETNQ9HD89 108 aa13.69□□□□□ -0.22
VPS33A-205ENST00000541169 ARL2-SNX15V9GYD0 113 aa13.69□□□□□ -0.22
VPS33A-205ENST00000541169 ZNF705EA8MWA4 302 aaPredicted RBP13.68□□□□□ -0.22
VPS33A-205ENST00000541169 K7EQM0 130 aa13.68□□□□□ -0.22
VPS33A-205ENST00000541169 INSP01308 110 aa13.68□□□□□ -0.22
VPS33A-205ENST00000541169 ZNF705DP0CH99 300 aaPredicted RBP13.68□□□□□ -0.22
VPS33A-205ENST00000541169 ZNF705BP0CI00 300 aaPredicted RBP13.68□□□□□ -0.22
VPS33A-205ENST00000541169 IQCF2Q8IXL9 164 aa13.68□□□□□ -0.22
VPS33A-205ENST00000541169 C5orf17Q8NAS9 161 aa13.68□□□□□ -0.22
VPS33A-205ENST00000541169 FAM213BQ8TBF2 198 aa13.68□□□□□ -0.22
VPS33A-205ENST00000541169 TCEAL7Q9BRU2 100 aa13.68□□□□□ -0.22
VPS33A-205ENST00000541169 FBLL1A6NHQ2 334 aaKnown RBP13.67□□□□□ -0.22
VPS33A-205ENST00000541169 PRAC2D3DTV9 90 aa13.67□□□□□ -0.22
VPS33A-205ENST00000541169 H2AFB1P0C5Y9 115 aa13.67□□□□□ -0.22
VPS33A-205ENST00000541169 ZNF705AQ6ZN79 300 aaPredicted RBP13.67□□□□□ -0.22
VPS33A-205ENST00000541169 SFT2D1Q8WV19 159 aa13.67□□□□□ -0.22
VPS33A-205ENST00000541169 LENEPQ9Y5L5 61 aa13.67□□□□□ -0.22
VPS33A-205ENST00000541169 DIRC3C9JPN6 131 aa13.66□□□□□ -0.22
VPS33A-205ENST00000541169 SULT1A2P50226 295 aa13.66□□□□□ -0.22
VPS33A-205ENST00000541169 SPINK13Q1W4C9 94 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 81.8 ms