RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 TEX29Q8N6K0 151 aa15.87■□□□□ 0.13
VPS28-209ENST00000528142 SIGLECL1Q8N7X8 197 aa15.87■□□□□ 0.13
VPS28-209ENST00000528142 TLN2Q9Y4G6 2542 aa15.87■□□□□ 0.13
VPS28-209ENST00000528142 C16orf54Q6UWD8 224 aa15.87■□□□□ 0.13
VPS28-209ENST00000528142 IL17RELQ6ZVW7 336 aa15.87■□□□□ 0.13
VPS28-209ENST00000528142 MXRA5Q9NR99 2828 aa15.86■□□□□ 0.13
VPS28-209ENST00000528142 HOXA5P20719 270 aa15.86■□□□□ 0.13
VPS28-209ENST00000528142 HLA-DMBP28068 263 aa15.86■□□□□ 0.13
VPS28-209ENST00000528142 TCL1AP56279 114 aa15.86■□□□□ 0.13
VPS28-209ENST00000528142 IGFL4Q6B9Z1 124 aa15.86■□□□□ 0.13
VPS28-209ENST00000528142 TRAPPC1Q9Y5R8 145 aa15.86■□□□□ 0.13
VPS28-209ENST00000528142 GLMPQ8WWB7 406 aa15.85■□□□□ 0.13
VPS28-209ENST00000528142 PEF1Q9UBV8 284 aaKnown RBP15.85■□□□□ 0.13
VPS28-209ENST00000528142 CHEK1O14757 476 aa15.84■□□□□ 0.13
VPS28-209ENST00000528142 FRMD6-AS1P0C7T7 363 aa15.84■□□□□ 0.13
VPS28-209ENST00000528142 Q8N2B8 174 aa15.84■□□□□ 0.13
VPS28-209ENST00000528142 TSKUQ8WUA8 353 aa15.84■□□□□ 0.13
VPS28-209ENST00000528142 SLC50A1Q9BRV3 221 aa15.84■□□□□ 0.13
VPS28-209ENST00000528142 IZUMO1RA6ND01 250 aa15.84■□□□□ 0.13
VPS28-209ENST00000528142 NPIPB6E9PJ23 425 aa15.84■□□□□ 0.13
VPS28-209ENST00000528142 RPP21Q9H633 154 aaKnown RBP15.84■□□□□ 0.13
VPS28-209ENST00000528142 IGKV2-40A0A087WW87 121 aaPredicted RBP15.83■□□□□ 0.12
VPS28-209ENST00000528142 IGKV2D-40P01614 121 aaPredicted RBP15.83■□□□□ 0.12
VPS28-209ENST00000528142 MEOX2P50222 304 aa15.83■□□□□ 0.12
VPS28-209ENST00000528142 CT83Q5H943 113 aa15.83■□□□□ 0.12
VPS28-209ENST00000528142 LCN12Q6JVE5 192 aa15.83■□□□□ 0.12
VPS28-209ENST00000528142 ZC2HC1AQ96GY0 325 aa15.83■□□□□ 0.12
VPS28-209ENST00000528142 ASCL2Q99929 193 aa15.83■□□□□ 0.12
VPS28-209ENST00000528142 FLNBO75369 2602 aaKnown RBP15.83■□□□□ 0.12
VPS28-209ENST00000528142 ZNF705FA8MVS1 300 aaPredicted RBP15.82■□□□□ 0.12
VPS28-209ENST00000528142 P01737 135 aa15.82■□□□□ 0.12
VPS28-209ENST00000528142 CBLN1P23435 193 aa15.82■□□□□ 0.12
VPS28-209ENST00000528142 AKR1D1P51857 326 aa15.82■□□□□ 0.12
VPS28-209ENST00000528142 FOXE3Q13461 319 aa15.82■□□□□ 0.12
VPS28-209ENST00000528142 TMEM86BQ8N661 226 aa15.82■□□□□ 0.12
VPS28-209ENST00000528142 MYOZ3Q8TDC0 251 aa15.82■□□□□ 0.12
VPS28-209ENST00000528142 DUX5Q96PT3 197 aa15.82■□□□□ 0.12
VPS28-209ENST00000528142 TRAV8-2A0A0B4J237 113 aa15.82■□□□□ 0.12
VPS28-209ENST00000528142 SLC35B1P78383 322 aa15.82■□□□□ 0.12
VPS28-209ENST00000528142 GBGT1Q8N5D6 347 aa15.82■□□□□ 0.12
VPS28-209ENST00000528142 DAZAP1Q96EP5 407 aaKnown RBP15.82■□□□□ 0.12
VPS28-209ENST00000528142 FBLL1A6NHQ2 334 aaKnown RBP15.81■□□□□ 0.12
VPS28-209ENST00000528142 CD5LO43866 347 aa15.81■□□□□ 0.12
VPS28-209ENST00000528142 SPINK4O60575 86 aa15.81■□□□□ 0.12
VPS28-209ENST00000528142 RPLP1P05386 114 aaKnown RBP15.81■□□□□ 0.12
VPS28-209ENST00000528142 ELANEP08246 267 aa15.81■□□□□ 0.12
VPS28-209ENST00000528142 CDX1P47902 265 aaPredicted RBP15.81■□□□□ 0.12
VPS28-209ENST00000528142 C8orf86Q6ZUL3 223 aa15.81■□□□□ 0.12
VPS28-209ENST00000528142 COX8CQ7Z4L0 72 aa15.81■□□□□ 0.12
VPS28-209ENST00000528142 NEU1Q99519 415 aa15.81■□□□□ 0.12
VPS28-209ENST00000528142 GNB1LQ9BYB4 327 aa15.81■□□□□ 0.12
VPS28-209ENST00000528142 NAT8BQ9UHF3 227 aa15.81■□□□□ 0.12
VPS28-209ENST00000528142 CRIP1P50238 77 aa15.8■□□□□ 0.12
VPS28-209ENST00000528142 RPL19P84098 196 aaKnown RBP15.8■□□□□ 0.12
VPS28-209ENST00000528142 RNF182Q8N6D2 247 aa15.8■□□□□ 0.12
VPS28-209ENST00000528142 RNF152Q8N8N0 203 aa15.8■□□□□ 0.12
VPS28-209ENST00000528142 NUP35Q8NFH5 326 aa15.8■□□□□ 0.12
VPS28-209ENST00000528142 IFITM10A6NMD0 228 aa15.8■□□□□ 0.12
VPS28-209ENST00000528142 GPHB5Q86YW7 130 aa15.8■□□□□ 0.12
VPS28-209ENST00000528142 OR4B1Q8NGF8 309 aa15.8■□□□□ 0.12
VPS28-209ENST00000528142 C8orf49Q96NF6 230 aa15.8■□□□□ 0.12
VPS28-209ENST00000528142 SMR3AQ99954 134 aa15.8■□□□□ 0.12
VPS28-209ENST00000528142 VGLL1Q99990 258 aa15.8■□□□□ 0.12
VPS28-209ENST00000528142 BAHCC1Q9P281 2608 aa15.79■□□□□ 0.12
VPS28-209ENST00000528142 A8MWL6 223 aa15.79■□□□□ 0.12
VPS28-209ENST00000528142 PRAC2D3DTV9 90 aa15.79■□□□□ 0.12
VPS28-209ENST00000528142 COX19Q49B96 90 aa15.79■□□□□ 0.12
VPS28-209ENST00000528142 COA6Q5JTJ3 125 aaKnown RBP15.79■□□□□ 0.12
VPS28-209ENST00000528142 GFI1BQ5VTD9 330 aa15.79■□□□□ 0.12
VPS28-209ENST00000528142 SONP18583 2426 aaKnown RBP15.79■□□□□ 0.12
VPS28-209ENST00000528142 A0A1W2PS18 150 aa15.78■□□□□ 0.12
VPS28-209ENST00000528142 HIGD1CA8MV81 97 aa15.78■□□□□ 0.12
VPS28-209ENST00000528142 K7EMT4 169 aa15.78■□□□□ 0.12
VPS28-209ENST00000528142 MRPL54Q6P161 138 aaKnown RBP15.78■□□□□ 0.12
VPS28-209ENST00000528142 TMEM136Q6ZRR5 245 aa15.78■□□□□ 0.12
VPS28-209ENST00000528142 MRPL53Q96EL3 112 aaKnown RBP15.78■□□□□ 0.12
VPS28-209ENST00000528142 PRR25Q96S07 402 aa15.78■□□□□ 0.12
VPS28-209ENST00000528142 MRPL18Q9H0U6 180 aaKnown RBP15.78■□□□□ 0.12
VPS28-209ENST00000528142 DAZ1Q9NQZ3 744 aaKnown RBP15.78■□□□□ 0.12
VPS28-209ENST00000528142 ANK3Q12955 4377 aaKnown RBP15.78■□□□□ 0.12
VPS28-209ENST00000528142 IGHV7-4-1A0A0J9YVY3 117 aa15.78■□□□□ 0.12
VPS28-209ENST00000528142 RBAKDNA6NC62 111 aa15.78■□□□□ 0.12
VPS28-209ENST00000528142 SNURFLB1AK76 121 aa15.78■□□□□ 0.12
VPS28-209ENST00000528142 TM4SF20Q53R12 229 aa15.78■□□□□ 0.12
VPS28-209ENST00000528142 SAPCD1Q5SSQ6 148 aa15.78■□□□□ 0.12
VPS28-209ENST00000528142 WDR73Q6P4I2 378 aa15.78■□□□□ 0.12
VPS28-209ENST00000528142 GTSF1Q8WW33 167 aa15.78■□□□□ 0.12
VPS28-209ENST00000528142 GFRA4Q9GZZ7 299 aa15.78■□□□□ 0.12
VPS28-209ENST00000528142 FAM106AQ4KMX7 169 aa15.77■□□□□ 0.11
VPS28-209ENST00000528142 HIST3H2BBQ8N257 126 aa15.77■□□□□ 0.11
VPS28-209ENST00000528142 WIPF2Q8TF74 440 aaPredicted RBP15.77■□□□□ 0.11
VPS28-209ENST00000528142 XKRY2A2RUG3 117 aa15.76■□□□□ 0.11
VPS28-209ENST00000528142 FAM231BA6NCW3 169 aa15.76■□□□□ 0.11
VPS28-209ENST00000528142 MT-ND6P03923 174 aa15.76■□□□□ 0.11
VPS28-209ENST00000528142 RASL11AQ6T310 242 aa15.76■□□□□ 0.11
VPS28-209ENST00000528142 TCF24Q7RTU0 167 aa15.76■□□□□ 0.11
VPS28-209ENST00000528142 LINC00518Q8N0U6 118 aa15.76■□□□□ 0.11
VPS28-209ENST00000528142 UBE2E2Q96LR5 201 aa15.76■□□□□ 0.11
VPS28-209ENST00000528142 RHPN1-AS1Q9BWJ2 59 aa15.76■□□□□ 0.11
VPS28-209ENST00000528142 LGALS1P09382 135 aaKnown RBP15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 92 ms