RNA–Protein interactions for RNA: ENST00000507257.5

NUP54-205, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 1,938 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-205ENST00000507257 GCSHP23434 173 aa13.9□□□□□ -0.18
NUP54-205ENST00000507257 FCGR2BP31994 310 aaPredicted RBP13.9□□□□□ -0.18
NUP54-205ENST00000507257 WFDC8Q8IUA0 241 aa13.9□□□□□ -0.18
NUP54-205ENST00000507257 PRSS33Q8NF86 280 aa13.9□□□□□ -0.18
NUP54-205ENST00000507257 RNF185Q96GF1 192 aa13.9□□□□□ -0.18
NUP54-205ENST00000507257 ASCL2Q99929 193 aa13.9□□□□□ -0.18
NUP54-205ENST00000507257 TEX48A0A1B0GUV7 120 aa13.9□□□□□ -0.18
NUP54-205ENST00000507257 E9PLD3 99 aa13.9□□□□□ -0.18
NUP54-205ENST00000507257 IGKCP01834 107 aa13.9□□□□□ -0.18
NUP54-205ENST00000507257 FTH1P19P0C7X4 201 aa13.9□□□□□ -0.18
NUP54-205ENST00000507257 EGR2P11161 476 aaPredicted RBP13.9□□□□□ -0.18
NUP54-205ENST00000507257 TMEM11P17152 192 aa13.9□□□□□ -0.18
NUP54-205ENST00000507257 SRSF6Q13247 344 aaKnown RBP13.9□□□□□ -0.18
NUP54-205ENST00000507257 TWIST1Q15672 202 aa13.9□□□□□ -0.18
NUP54-205ENST00000507257 IGFL3Q6UXB1 125 aa13.9□□□□□ -0.18
NUP54-205ENST00000507257 CCL17Q92583 94 aa13.9□□□□□ -0.18
NUP54-205ENST00000507257 PSMG3-AS1Q96PY0 264 aa13.9□□□□□ -0.18
NUP54-205ENST00000507257 ZDBF2Q9HCK1 2354 aa13.89□□□□□ -0.19
NUP54-205ENST00000507257 CEND1Q8N111 149 aa13.89□□□□□ -0.19
NUP54-205ENST00000507257 TMSB15BA0A087X1C1 80 aa13.88□□□□□ -0.19
NUP54-205ENST00000507257 IGKV2D-26A0A0A0MRZ7 120 aa13.88□□□□□ -0.19
NUP54-205ENST00000507257 J3QR89 54 aa13.88□□□□□ -0.19
NUP54-205ENST00000507257 FXYD7P58549 80 aa13.88□□□□□ -0.19
NUP54-205ENST00000507257 TRBV25-1A0A075B6N4 114 aa13.88□□□□□ -0.19
NUP54-205ENST00000507257 PPIAL4CA0A0B4J2A2 164 aa13.88□□□□□ -0.19
NUP54-205ENST00000507257 ZNF207O43670 478 aaKnown RBP13.88□□□□□ -0.19
NUP54-205ENST00000507257 SIGMAR1Q99720 223 aa13.88□□□□□ -0.19
NUP54-205ENST00000507257 SMKR1H3BMG3 65 aa13.87□□□□□ -0.19
NUP54-205ENST00000507257 DPM2O94777 84 aa13.87□□□□□ -0.19
NUP54-205ENST00000507257 RPL7P18124 248 aaKnown RBP13.87□□□□□ -0.19
NUP54-205ENST00000507257 LEPP41159 167 aa13.87□□□□□ -0.19
NUP54-205ENST00000507257 ZNF575Q86XF7 245 aa13.87□□□□□ -0.19
NUP54-205ENST00000507257 COL6A3P12111 3177 aa13.86□□□□□ -0.19
NUP54-205ENST00000507257 PRSS47A8MTI9 375 aa13.86□□□□□ -0.19
NUP54-205ENST00000507257 LY6LH3BQJ8 138 aa13.86□□□□□ -0.19
NUP54-205ENST00000507257 RPL24P83731 157 aaKnown RBP13.86□□□□□ -0.19
NUP54-205ENST00000507257 CD300EQ496F6 205 aaPredicted RBP13.86□□□□□ -0.19
NUP54-205ENST00000507257 RALYQ9UKM9 306 aaKnown RBP13.86□□□□□ -0.19
NUP54-205ENST00000507257 DSPP15924 2871 aaKnown RBP13.86□□□□□ -0.19
NUP54-205ENST00000507257 LINC01619G3V211 115 aa13.86□□□□□ -0.19
NUP54-205ENST00000507257 KLF17Q5JT82 389 aaPredicted RBP13.86□□□□□ -0.19
NUP54-205ENST00000507257 RNASE6Q93091 150 aaKnown RBP13.86□□□□□ -0.19
NUP54-205ENST00000507257 RPEQ96AT9 228 aa13.86□□□□□ -0.19
NUP54-205ENST00000507257 C16orf97H3BN30 126 aa13.85□□□□□ -0.19
NUP54-205ENST00000507257 TNFRSF6BO95407 300 aa13.85□□□□□ -0.19
NUP54-205ENST00000507257 TCTAP57738 103 aa13.85□□□□□ -0.19
NUP54-205ENST00000507257 Q8N8P6 123 aa13.85□□□□□ -0.19
NUP54-205ENST00000507257 IGFBPL1Q8WX77 278 aa13.85□□□□□ -0.19
NUP54-205ENST00000507257 SPATA25Q9BR10 227 aa13.85□□□□□ -0.19
NUP54-205ENST00000507257 SPANXB1Q9NS25 103 aaPredicted RBP13.85□□□□□ -0.19
NUP54-205ENST00000507257 GNG7O60262 68 aa13.84□□□□□ -0.19
NUP54-205ENST00000507257 CNIH1O95406 144 aa13.84□□□□□ -0.19
NUP54-205ENST00000507257 MFAP4P55083 255 aa13.84□□□□□ -0.19
NUP54-205ENST00000507257 BSPH1Q075Z2 132 aa13.84□□□□□ -0.19
NUP54-205ENST00000507257 DEFB109BQ30KR1 87 aa13.84□□□□□ -0.19
NUP54-205ENST00000507257 GFRALQ6UXV0 394 aa13.84□□□□□ -0.19
NUP54-205ENST00000507257 C18orf15Q96N68 181 aa13.84□□□□□ -0.19
NUP54-205ENST00000507257 SELENOKQ9Y6D0 94 aa13.84□□□□□ -0.19
NUP54-205ENST00000507257 ABCA1O95477 2261 aa13.84□□□□□ -0.19
NUP54-205ENST00000507257 IGLV2-18A0A075B6J9 118 aa13.84□□□□□ -0.19
NUP54-205ENST00000507257 IGKV2-40A0A087WW87 121 aaPredicted RBP13.84□□□□□ -0.19
NUP54-205ENST00000507257 A0A1W2PRD5 423 aa13.84□□□□□ -0.19
NUP54-205ENST00000507257 A0A1W2PRF3 423 aa13.84□□□□□ -0.19
NUP54-205ENST00000507257 A0A1W2PRM7 423 aa13.84□□□□□ -0.19
NUP54-205ENST00000507257 IGKV2D-40P01614 121 aaPredicted RBP13.84□□□□□ -0.19
NUP54-205ENST00000507257 PRSS1P07477 247 aa13.84□□□□□ -0.19
NUP54-205ENST00000507257 AZU1P20160 251 aa13.84□□□□□ -0.19
NUP54-205ENST00000507257 ZNF80P51504 273 aaPredicted RBP13.84□□□□□ -0.19
NUP54-205ENST00000507257 TM4SF20Q53R12 229 aa13.84□□□□□ -0.19
NUP54-205ENST00000507257 Q6ZS92 163 aa13.84□□□□□ -0.19
NUP54-205ENST00000507257 FAM57AQ8TBR7 257 aa13.84□□□□□ -0.19
NUP54-205ENST00000507257 SVILO95425 2214 aa13.83□□□□□ -0.2
NUP54-205ENST00000507257 NPIPB5A8MRT5 1133 aa13.83□□□□□ -0.2
NUP54-205ENST00000507257 IGLL5B9A064 214 aa13.83□□□□□ -0.2
NUP54-205ENST00000507257 NDUFA3O95167 84 aa13.83□□□□□ -0.2
NUP54-205ENST00000507257 PRRC2CQ9Y520 2896 aaKnown RBP13.83□□□□□ -0.2
NUP54-205ENST00000507257 GPR179Q6PRD1 2367 aa13.82□□□□□ -0.2
NUP54-205ENST00000507257 IGLV11-55A0A075B6I3 123 aa13.82□□□□□ -0.2
NUP54-205ENST00000507257 GAGE12HA6NDE8 117 aa13.82□□□□□ -0.2
NUP54-205ENST00000507257 FABP5P3A8MUU1 101 aa13.82□□□□□ -0.2
NUP54-205ENST00000507257 ZC2HC1BQ5TFG8 222 aa13.82□□□□□ -0.2
NUP54-205ENST00000507257 CLEC2AQ6UVW9 174 aa13.82□□□□□ -0.2
NUP54-205ENST00000507257 NPBQ8NG41 125 aa13.82□□□□□ -0.2
NUP54-205ENST00000507257 NHP2Q9NX24 153 aaKnown RBP13.82□□□□□ -0.2
NUP54-205ENST00000507257 ZNF672Q499Z4 452 aaPredicted RBP13.82□□□□□ -0.2
NUP54-205ENST00000507257 WFDC3Q8IUB2 231 aa13.82□□□□□ -0.2
NUP54-205ENST00000507257 ZNF502Q8TBZ5 544 aa13.82□□□□□ -0.2
NUP54-205ENST00000507257 ARPC1AQ92747 370 aa13.82□□□□□ -0.2
NUP54-205ENST00000507257 FOXC2Q99958 501 aa13.82□□□□□ -0.2
NUP54-205ENST00000507257 F8W735 103 aaPredicted RBP13.81□□□□□ -0.2
NUP54-205ENST00000507257 NBR2O15453 112 aa13.81□□□□□ -0.2
NUP54-205ENST00000507257 IGF2-ASQ6U949 168 aa13.81□□□□□ -0.2
NUP54-205ENST00000507257 TMEM158Q8WZ71 300 aa13.81□□□□□ -0.2
NUP54-205ENST00000507257 A0A1B0GWB2 263 aa13.8□□□□□ -0.2
NUP54-205ENST00000507257 TMEM8BA6NDV4 472 aa13.8□□□□□ -0.2
NUP54-205ENST00000507257 K7ERJ3 54 aa13.8□□□□□ -0.2
NUP54-205ENST00000507257 IGHG4P01861 327 aa13.8□□□□□ -0.2
NUP54-205ENST00000507257 ZNF479Q96JC4 524 aa13.8□□□□□ -0.2
NUP54-205ENST00000507257 FANCD2OSQ96PS1 177 aa13.8□□□□□ -0.2
NUP54-205ENST00000507257 RBAKDNA6NC62 111 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms