RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 WFDC5Q8TCV5 224 aa0.59□□□□□ -2.31
VPS50-219ENST00000495039 ZNF431Q8TF32 576 aaPredicted RBP0.59□□□□□ -2.31
VPS50-219ENST00000495039 SKA2Q8WVK7 121 aaPredicted RBP0.59□□□□□ -2.31
VPS50-219ENST00000495039 C1orf54Q8WWF1 131 aa0.59□□□□□ -2.31
VPS50-219ENST00000495039 PLEKHB2Q96CS7 222 aa0.59□□□□□ -2.31
VPS50-219ENST00000495039 LXNQ9BS40 222 aa0.59□□□□□ -2.31
VPS50-219ENST00000495039 RTL8AQ9BWD3 113 aa0.59□□□□□ -2.31
VPS50-219ENST00000495039 NPCDR1Q9BY65 106 aa0.59□□□□□ -2.31
VPS50-219ENST00000495039 TMEM133Q9H2Q1 129 aa0.59□□□□□ -2.31
VPS50-219ENST00000495039 CACYBPQ9HB71 228 aaKnown RBP0.59□□□□□ -2.31
VPS50-219ENST00000495039 POPDC3Q9HBV1 291 aa0.59□□□□□ -2.31
VPS50-219ENST00000495039 BCL2L10Q9HD36 194 aa0.59□□□□□ -2.31
VPS50-219ENST00000495039 MRPL40Q9NQ50 206 aaKnown RBP0.59□□□□□ -2.31
VPS50-219ENST00000495039 SPANXA1Q9NS26 97 aa0.59□□□□□ -2.31
VPS50-219ENST00000495039 LAMTOR2Q9Y2Q5 125 aa0.59□□□□□ -2.31
VPS50-219ENST00000495039 PTPN23Q9H3S7 1636 aa0.59□□□□□ -2.32
VPS50-219ENST00000495039 A2ML1A8K2U0 1454 aa0.59□□□□□ -2.32
VPS50-219ENST00000495039 ADGRL2O95490 1459 aa0.59□□□□□ -2.32
VPS50-219ENST00000495039 ERVK-7P63135 1459 aa0.59□□□□□ -2.32
VPS50-219ENST00000495039 SHANK2Q9UPX8 1470 aa0.59□□□□□ -2.32
VPS50-219ENST00000495039 TNRC6AQ8NDV7 1962 aaKnown RBP0.59□□□□□ -2.32
VPS50-219ENST00000495039 MAPKBP1O60336 1514 aa0.59□□□□□ -2.32
VPS50-219ENST00000495039 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP0.59□□□□□ -2.32
VPS50-219ENST00000495039 KDM5DQ9BY66 1539 aa0.59□□□□□ -2.32
VPS50-219ENST00000495039 RFX7Q2KHR2 1363 aa0.58□□□□□ -2.32
VPS50-219ENST00000495039 PRDM2Q13029 1718 aa0.58□□□□□ -2.32
VPS50-219ENST00000495039 EIF4G3O43432 1585 aaKnown RBP0.58□□□□□ -2.32
VPS50-219ENST00000495039 MED1Q15648 1581 aaPredicted RBP0.58□□□□□ -2.32
VPS50-219ENST00000495039 SAMD9LQ8IVG5 1584 aa0.58□□□□□ -2.32
VPS50-219ENST00000495039 THOC2Q8NI27 1593 aaKnown RBP0.58□□□□□ -2.32
VPS50-219ENST00000495039 PLXND1Q9Y4D7 1925 aa0.58□□□□□ -2.32
VPS50-219ENST00000495039 BCL9O00512 1426 aa0.58□□□□□ -2.32
VPS50-219ENST00000495039 TNS3Q68CZ2 1445 aa0.58□□□□□ -2.32
VPS50-219ENST00000495039 TRAV5A0A0B4J249 113 aa0.58□□□□□ -2.32
VPS50-219ENST00000495039 A0A0G2JND7 137 aa0.58□□□□□ -2.32
VPS50-219ENST00000495039 GNG14A0A1W2PPG7 69 aa0.58□□□□□ -2.32
VPS50-219ENST00000495039 TLCD2A6NGC4 264 aa0.58□□□□□ -2.32
VPS50-219ENST00000495039 CCDC160A6NGH7 325 aa0.58□□□□□ -2.32
VPS50-219ENST00000495039 C17orf112F2Z3M2 114 aa0.58□□□□□ -2.32
VPS50-219ENST00000495039 TMEM256-PLSCR3K7ERE1 68 aa0.58□□□□□ -2.32
VPS50-219ENST00000495039 INE1O15225 51 aa0.58□□□□□ -2.32
VPS50-219ENST00000495039 LYRM1O43325 122 aa0.58□□□□□ -2.32
VPS50-219ENST00000495039 MFSD11O43934 449 aa0.58□□□□□ -2.32
VPS50-219ENST00000495039 CST7O76096 145 aa0.58□□□□□ -2.32
VPS50-219ENST00000495039 GADD45GO95257 159 aa0.58□□□□□ -2.32
VPS50-219ENST00000495039 TNFP01375 233 aa0.58□□□□□ -2.32
VPS50-219ENST00000495039 TRGC2P03986 189 aa0.58□□□□□ -2.32
VPS50-219ENST00000495039 OR10J4P0C629 311 aa0.58□□□□□ -2.32
VPS50-219ENST00000495039 CD52P31358 61 aa0.58□□□□□ -2.32
VPS50-219ENST00000495039 GLRXP35754 106 aa0.58□□□□□ -2.32
VPS50-219ENST00000495039 DYNLT3P51808 116 aa0.58□□□□□ -2.32
VPS50-219ENST00000495039 GTF2A1P52655 376 aaPredicted RBP0.58□□□□□ -2.32
VPS50-219ENST00000495039 TMBIM6P55061 237 aa0.58□□□□□ -2.32
VPS50-219ENST00000495039 B2MP61769 119 aa0.58□□□□□ -2.32
VPS50-219ENST00000495039 CNBPP62633 177 aaKnown RBP0.58□□□□□ -2.32
VPS50-219ENST00000495039 RTL8BQ17RB0 113 aa0.58□□□□□ -2.32
VPS50-219ENST00000495039 CCDC153Q494R4 210 aa0.58□□□□□ -2.32
VPS50-219ENST00000495039 C1orf140Q5VVS0 124 aa0.58□□□□□ -2.32
VPS50-219ENST00000495039 SAMD13Q5VXD3 122 aa0.58□□□□□ -2.32
VPS50-219ENST00000495039 C3orf56Q8N813 242 aa0.58□□□□□ -2.32
VPS50-219ENST00000495039 GRPEL2Q8TAA5 225 aa0.58□□□□□ -2.32
VPS50-219ENST00000495039 STAG3L4Q8TBR4 150 aa0.58□□□□□ -2.32
VPS50-219ENST00000495039 PYDC1Q8WXC3 89 aa0.58□□□□□ -2.32
VPS50-219ENST00000495039 LZICQ8WZA0 190 aa0.58□□□□□ -2.32
VPS50-219ENST00000495039 ADAT3Q96EY9 351 aaPredicted RBP0.58□□□□□ -2.32
VPS50-219ENST00000495039 MCEEQ96PE7 176 aa0.58□□□□□ -2.32
VPS50-219ENST00000495039 DDA1Q9BW61 102 aa0.58□□□□□ -2.32
VPS50-219ENST00000495039 TCEAL2Q9H3H9 227 aaPredicted RBP0.58□□□□□ -2.32
VPS50-219ENST00000495039 Q9H521 79 aa0.58□□□□□ -2.32
VPS50-219ENST00000495039 CDC42SE1Q9NRR8 79 aa0.58□□□□□ -2.32
VPS50-219ENST00000495039 SPANXCQ9NY87 97 aa0.58□□□□□ -2.32
VPS50-219ENST00000495039 NDUFAF1Q9Y375 327 aa0.58□□□□□ -2.32
VPS50-219ENST00000495039 HSPB11Q9Y547 144 aa0.58□□□□□ -2.32
VPS50-219ENST00000495039 NUBP2Q9Y5Y2 271 aa0.58□□□□□ -2.32
VPS50-219ENST00000495039 PTPRMP28827 1452 aa0.58□□□□□ -2.32
VPS50-219ENST00000495039 ATP7BP35670 1465 aa0.58□□□□□ -2.32
VPS50-219ENST00000495039 MYOM2P54296 1465 aa0.58□□□□□ -2.32
VPS50-219ENST00000495039 PRDM15P57071 1507 aaPredicted RBP0.58□□□□□ -2.32
VPS50-219ENST00000495039 ATP7AQ04656 1500 aa0.58□□□□□ -2.32
VPS50-219ENST00000495039 EFCAB6Q5THR3 1501 aa0.58□□□□□ -2.32
VPS50-219ENST00000495039 ZFYVE16Q7Z3T8 1539 aa0.58□□□□□ -2.32
VPS50-219ENST00000495039 SYCP2Q9BX26 1530 aa0.58□□□□□ -2.32
VPS50-219ENST00000495039 SUPT6HQ7KZ85 1726 aaKnown RBP0.58□□□□□ -2.32
VPS50-219ENST00000495039 MCM3APO60318 1980 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 KIF14Q15058 1648 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 RAPGEF6Q8TEU7 1601 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 ABCA5Q8WWZ7 1642 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 ZNF609O15014 1411 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 KDM6AO15550 1401 aaPredicted RBP0.57□□□□□ -2.32
VPS50-219ENST00000495039 E9PCH4 1651 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 MED14O60244 1454 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 IQSEC2Q5JU85 1478 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 CDK12Q9NYV4 1490 aaPredicted RBP0.57□□□□□ -2.32
VPS50-219ENST00000495039 NRXN1Q9ULB1 1477 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 TCRBV4S1A1TA0A5B7 111 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 OR2T8A6NH00 312 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 ARL5CA6NH57 179 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 ZNF736B4DX44 427 aaPredicted RBP0.57□□□□□ -2.32
VPS50-219ENST00000495039 C5orf58C9J3I9 102 aa0.57□□□□□ -2.32
VPS50-219ENST00000495039 APOC4-APOC2K7ER74 178 aa0.57□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 84.8 ms