RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 PRAC2D3DTV9 90 aa14.45□□□□□ -0.1
USP39-218ENST00000493829 F6UB75 175 aa14.45□□□□□ -0.1
USP39-218ENST00000493829 WIPF1O43516 503 aa14.45□□□□□ -0.1
USP39-218ENST00000493829 SRSF3P84103 164 aaKnown RBP14.45□□□□□ -0.1
USP39-218ENST00000493829 MEF2BQ02080 365 aaPredicted RBP14.45□□□□□ -0.1
USP39-218ENST00000493829 PSG3Q16557 428 aa14.45□□□□□ -0.1
USP39-218ENST00000493829 ODF3L2Q3SX64 289 aa14.45□□□□□ -0.1
USP39-218ENST00000493829 APRG1Q8IVJ8 170 aa14.45□□□□□ -0.1
USP39-218ENST00000493829 WFDC10AQ9H1F0 79 aa14.45□□□□□ -0.1
USP39-218ENST00000493829 ARL2-SNX15V9GYD0 113 aa14.45□□□□□ -0.1
USP39-218ENST00000493829 ZNF705DP0CH99 300 aaPredicted RBP14.44□□□□□ -0.1
USP39-218ENST00000493829 ZNF705BP0CI00 300 aaPredicted RBP14.44□□□□□ -0.1
USP39-218ENST00000493829 BEAN1Q3B7T3 259 aa14.44□□□□□ -0.1
USP39-218ENST00000493829 COMMD7Q86VX2 200 aa14.44□□□□□ -0.1
USP39-218ENST00000493829 RPUSD4Q96CM3 377 aaKnown RBP14.44□□□□□ -0.1
USP39-218ENST00000493829 PRR25Q96S07 402 aa14.44□□□□□ -0.1
USP39-218ENST00000493829 IGKV2-40A0A087WW87 121 aaPredicted RBP14.43□□□□□ -0.1
USP39-218ENST00000493829 SCO2A0A1W2PP80 73 aa14.43□□□□□ -0.1
USP39-218ENST00000493829 IGKV2D-40P01614 121 aaPredicted RBP14.43□□□□□ -0.1
USP39-218ENST00000493829 ZNF506Q5JVG8 444 aa14.43□□□□□ -0.1
USP39-218ENST00000493829 C5orf17Q8NAS9 161 aa14.43□□□□□ -0.1
USP39-218ENST00000493829 CSN1S1P47710 185 aa14.42□□□□□ -0.1
USP39-218ENST00000493829 CEBPGP53567 150 aa14.42□□□□□ -0.1
USP39-218ENST00000493829 KRTAP10-11P60412 298 aa14.42□□□□□ -0.1
USP39-218ENST00000493829 PMS2P11Q13670 270 aa14.42□□□□□ -0.1
USP39-218ENST00000493829 SAMD5Q5TGI4 173 aa14.42□□□□□ -0.1
USP39-218ENST00000493829 GTSCR1Q86UQ5 136 aa14.42□□□□□ -0.1
USP39-218ENST00000493829 KNCNA6PVL3 124 aa14.42□□□□□ -0.1
USP39-218ENST00000493829 OR11H12B2RN74 326 aa14.42□□□□□ -0.1
USP39-218ENST00000493829 GDF5OSQ5U4N7 250 aa14.42□□□□□ -0.1
USP39-218ENST00000493829 GOLT1AQ6ZVE7 132 aa14.42□□□□□ -0.1
USP39-218ENST00000493829 CCDC28AQ8IWP9 274 aa14.42□□□□□ -0.1
USP39-218ENST00000493829 PRELID1Q9Y255 219 aa14.42□□□□□ -0.1
USP39-218ENST00000493829 DNHD1Q96M86 4753 aa14.41□□□□□ -0.1
USP39-218ENST00000493829 PEX7O00628 323 aa14.41□□□□□ -0.1
USP39-218ENST00000493829 SGK494Q96LW2 274 aa14.41□□□□□ -0.1
USP39-218ENST00000493829 NKX6-2Q9C056 277 aaPredicted RBP14.41□□□□□ -0.1
USP39-218ENST00000493829 EPDR1Q9UM22 224 aa14.41□□□□□ -0.1
USP39-218ENST00000493829 DIRC3C9JPN6 131 aa14.4□□□□□ -0.1
USP39-218ENST00000493829 TCRAP04437 139 aa14.4□□□□□ -0.1
USP39-218ENST00000493829 TAGLN2P37802 199 aaKnown RBP14.4□□□□□ -0.1
USP39-218ENST00000493829 HIST1H1AQ02539 215 aaPredicted RBP14.4□□□□□ -0.1
USP39-218ENST00000493829 ACTL10Q5JWF8 245 aa14.4□□□□□ -0.1
USP39-218ENST00000493829 MRPL53Q96EL3 112 aaKnown RBP14.4□□□□□ -0.1
USP39-218ENST00000493829 ERCC8Q13216 396 aa14.39□□□□□ -0.11
USP39-218ENST00000493829 LINC00479Q96M42 142 aa14.39□□□□□ -0.11
USP39-218ENST00000493829 ASCL2Q99929 193 aa14.39□□□□□ -0.11
USP39-218ENST00000493829 ATG101Q9BSB4 218 aa14.39□□□□□ -0.11
USP39-218ENST00000493829 TREM1Q9NP99 234 aa14.39□□□□□ -0.11
USP39-218ENST00000493829 CLEC5AQ9NY25 188 aa14.39□□□□□ -0.11
USP39-218ENST00000493829 TRAV8-1A0A0A6YYK1 113 aa14.39□□□□□ -0.11
USP39-218ENST00000493829 TRAV34A0A0B4J273 112 aa14.39□□□□□ -0.11
USP39-218ENST00000493829 LINC00862A6NCI5 91 aa14.39□□□□□ -0.11
USP39-218ENST00000493829 C9JQL5 133 aa14.39□□□□□ -0.11
USP39-218ENST00000493829 IGKV3-20P01619 116 aa14.39□□□□□ -0.11
USP39-218ENST00000493829 EGFEM1PQ0D2K5 195 aa14.39□□□□□ -0.11
USP39-218ENST00000493829 PDE6DO43924 150 aa14.38□□□□□ -0.11
USP39-218ENST00000493829 AKR1C3P42330 323 aa14.38□□□□□ -0.11
USP39-218ENST00000493829 PEA15Q15121 130 aa14.38□□□□□ -0.11
USP39-218ENST00000493829 DEFB125Q8N687 156 aa14.38□□□□□ -0.11
USP39-218ENST00000493829 CYB561D1Q8N8Q1 229 aa14.38□□□□□ -0.11
USP39-218ENST00000493829 VGLL1Q99990 258 aa14.38□□□□□ -0.11
USP39-218ENST00000493829 DERL1Q9BUN8 251 aa14.38□□□□□ -0.11
USP39-218ENST00000493829 C19orf73Q9NVV2 129 aa14.38□□□□□ -0.11
USP39-218ENST00000493829 F6UZH7 168 aa14.37□□□□□ -0.11
USP39-218ENST00000493829 EBLN2Q6P2I7 272 aa14.37□□□□□ -0.11
USP39-218ENST00000493829 OR8A1Q8NGG7 326 aa14.37□□□□□ -0.11
USP39-218ENST00000493829 OR10J6PQ8NGY7 276 aa14.37□□□□□ -0.11
USP39-218ENST00000493829 Q8TAT8 98 aa14.37□□□□□ -0.11
USP39-218ENST00000493829 TXNDC17Q9BRA2 123 aa14.37□□□□□ -0.11
USP39-218ENST00000493829 MED9Q9NWA0 146 aa14.37□□□□□ -0.11
USP39-218ENST00000493829 RAB19A4D1S5 217 aa14.36□□□□□ -0.11
USP39-218ENST00000493829 FOXI2Q6ZQN5 318 aa14.36□□□□□ -0.11
USP39-218ENST00000493829 SORL1Q92673 2214 aa14.36□□□□□ -0.11
USP39-218ENST00000493829 HIST1H2BAQ96A08 127 aa14.36□□□□□ -0.11
USP39-218ENST00000493829 SAV1Q9H4B6 383 aaPredicted RBP14.36□□□□□ -0.11
USP39-218ENST00000493829 A0A0J9YX75 114 aa14.36□□□□□ -0.11
USP39-218ENST00000493829 PRB2P02812 416 aaPredicted RBP14.36□□□□□ -0.11
USP39-218ENST00000493829 SRP19P09132 144 aaKnown RBP14.36□□□□□ -0.11
USP39-218ENST00000493829 CNN1P51911 297 aaKnown RBP14.36□□□□□ -0.11
USP39-218ENST00000493829 ZNF674Q2M3X9 581 aa14.36□□□□□ -0.11
USP39-218ENST00000493829 OR4B1Q8NGF8 309 aa14.36□□□□□ -0.11
USP39-218ENST00000493829 TCEAL7Q9BRU2 100 aa14.36□□□□□ -0.11
USP39-218ENST00000493829 SLC7A5P1Q8MH63 180 aa14.35□□□□□ -0.11
USP39-218ENST00000493829 C2CD4CQ8TF44 421 aa14.35□□□□□ -0.11
USP39-218ENST00000493829 C11orf52Q96A22 123 aa14.35□□□□□ -0.11
USP39-218ENST00000493829 CITED4Q96RK1 184 aa14.35□□□□□ -0.11
USP39-218ENST00000493829 K7EQM0 130 aa14.34□□□□□ -0.11
USP39-218ENST00000493829 CMC4P56277 68 aaPredicted RBP14.34□□□□□ -0.11
USP39-218ENST00000493829 PRNTQ86SH4 94 aa14.34□□□□□ -0.11
USP39-218ENST00000493829 HLA-DRB4P13762 266 aa14.33□□□□□ -0.11
USP39-218ENST00000493829 UBE2G1P62253 170 aa14.33□□□□□ -0.11
USP39-218ENST00000493829 TMEM78Q5T7P6 136 aa14.33□□□□□ -0.11
USP39-218ENST00000493829 AGPAT4-IT1Q9H0P7 198 aa14.33□□□□□ -0.11
USP39-218ENST00000493829 HLA-DRB4X5D2U9 266 aa14.33□□□□□ -0.11
USP39-218ENST00000493829 MGAM2Q2M2H8 2515 aa14.33□□□□□ -0.12
USP39-218ENST00000493829 NPIPB6E9PJ23 425 aa14.33□□□□□ -0.12
USP39-218ENST00000493829 RPL35P42766 123 aaKnown RBP14.33□□□□□ -0.12
USP39-218ENST00000493829 STHQ8IWL8 128 aa14.33□□□□□ -0.12
USP39-218ENST00000493829 Q8N1Y9 231 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 446.5 ms