RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 IGHV1-8P0DP01 117 aa8.67□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 SCGB1A1P11684 91 aa8.67□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 GNG5P63218 68 aa8.67□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 TMEM249Q2WGJ8 235 aa8.67□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 ZFAND6Q6FIF0 208 aa8.67□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 SVIPQ8NHG7 77 aa8.67□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 LINC00479Q96M42 142 aa8.67□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 GPR82Q96P67 336 aa8.67□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 RASL11BQ9BPW5 248 aa8.67□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 AAMDCQ9H7C9 122 aa8.67□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 SS18L2Q9UHA2 77 aa8.67□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 K7EN84 100 aa8.66□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 COX8AP10176 69 aa8.66□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 CTRLP40313 264 aa8.66□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 CENPVQ7Z7K6 275 aaPredicted RBP8.66□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 PRELID3AQ96N28 172 aa8.66□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 NDFIP1Q9BT67 221 aa8.66□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 PSMB11A5LHX3 300 aa8.66□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 TGFAP01135 160 aa8.66□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 ATP5L2Q7Z4Y8 100 aa8.66□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 C15orf62A8K5M9 175 aa8.66□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 SHISA9B4DS77 424 aa8.66□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 CFAP161Q6P656 301 aa8.66□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 TP73-AS1Q9UF72 201 aa8.66□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 C15orf61A6NNL5 157 aa8.65□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 H7C2G1 150 aa8.65□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 SMAD7O15105 426 aaKnown RBP8.65□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 MRPL32Q9BYC8 188 aaKnown RBP8.65□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 HCFC1P51610 2035 aa8.65□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 A0A1B0GW15 77 aa8.65□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 IGLV2-14P01704 120 aa8.65□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 ZNF502Q8TBZ5 544 aa8.65□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 NPFFR1Q9GZQ6 430 aa8.65□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 TP53TG3Q9ULZ0 132 aa8.65□□□□□ -1.02
MSH5-SAPCD1-207ENST00000493662 PROP1O75360 226 aa8.65□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 FCGR2BP31994 310 aaPredicted RBP8.65□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 LOXL3P58215 753 aa8.65□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 TWIST1Q15672 202 aa8.65□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 SRSF7Q16629 238 aaKnown RBP eCLIP8.65□□□□□ -1.035e-6■■■□□ 17.5
MSH5-SAPCD1-207ENST00000493662 Q6ZSR3 168 aa8.65□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 GOLT1AQ6ZVE7 132 aa8.65□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 OR52E5Q8NH55 327 aa8.65□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 IFI27L1Q96BM0 104 aa8.65□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 CITED1Q99966 193 aa8.65□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 FOXA2Q9Y261 457 aaPredicted RBP8.65□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 ADAMTS20P59510 1910 aa8.65□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 TRBV6-6A0A0A6YYG2 114 aa8.64□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 C22orf46C9J442 243 aa8.64□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 UPK2O00526 184 aa8.64□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 ORM1P02763 201 aa8.64□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 LOXP28300 417 aaPredicted RBP8.64□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 FXYD7P58549 80 aa8.64□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 GAGE2BQ13066 116 aa8.64□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 GAGE2EQ4V326 116 aa8.64□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 RITA1Q96K30 269 aa8.64□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 CCL19Q99731 98 aa8.64□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 GAGE2DQ9UEU5 116 aa8.64□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 ANKRD17O75179 2603 aaKnown RBP8.64□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 IGHV1-24A0A0C4DH33 117 aa8.64□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 ZNF785A8K8V0 405 aa8.64□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 H0YJW9 148 aa8.64□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 EMP1P54849 157 aa8.64□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 PRSS57Q6UWY2 283 aa8.64□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 C1orf229Q6ZS94 237 aaPredicted RBP8.64□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 DPM3Q9P2X0 92 aa8.64□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 TRAV8-2A0A0B4J237 113 aa8.64□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 OR11H12B2RN74 326 aa8.64□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 IGHV3-11P01762 117 aa8.64□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 Q6ZS49 121 aa8.64□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 OR11H1Q8NG94 326 aa8.64□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 OR11H2Q8NH07 326 aa8.64□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 FOXC2Q99958 501 aa8.64□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 MAP1LC3AQ9H492 121 aa8.64□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 UFC1Q9Y3C8 167 aa8.64□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 SRSF8Q9BRL6 282 aaKnown RBP8.63□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 C11orf1Q9H5F2 150 aa8.63□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 RNF114Q9Y508 228 aa8.63□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 NACAE9PAV3 2078 aa8.63□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 COL5A1P20908 1838 aaPredicted RBP8.63□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 TMEM189A5PLL7 270 aa8.63□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 B5MCH6 92 aa8.63□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 ADORA2A-AS1P86434 159 aa8.63□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 LINC00305Q7Z4B0 112 aa8.63□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 SYT8Q8NBV8 401 aa8.63□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 NUP37Q8NFH4 326 aa8.63□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.63□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 HBDP02042 147 aa8.63□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 LINC00173Q6ZV60 143 aa8.63□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 PPP1R27Q86WC6 154 aa8.63□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 ARPC1AQ92747 370 aa8.63□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 VGLL1Q99990 258 aa8.63□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 CFAP46Q8IYW2 2715 aa8.63□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 TRAV40A0A0B4J280 105 aa8.63□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 SH2D6Q7Z4S9 175 aa8.63□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 H3BMG7 143 aa8.62□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 OSR1Q8TAX0 266 aaPredicted RBP8.62□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 SLC25A48Q6ZT89 311 aaKnown RBP8.62□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 ODF3L1Q8IXM7 274 aa8.62□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 ORMDL3Q8N138 153 aa8.62□□□□□ -1.03
MSH5-SAPCD1-207ENST00000493662 TEX45Q8NA69 505 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms