RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 TRPM7Q96QT4 1865 aa2.41□□□□□ -2.02
VPS13D-207ENST00000476169 ZNF106Q9H2Y7 1883 aaKnown RBP2.41□□□□□ -2.02
VPS13D-207ENST00000476169 COL4A6Q14031 1691 aa2.41□□□□□ -2.02
VPS13D-207ENST00000476169 ZNF407Q9C0G0 2248 aa2.4□□□□□ -2.03
VPS13D-207ENST00000476169 C19orf84I3L1E1 186 aa2.4□□□□□ -2.03
VPS13D-207ENST00000476169 CXCL8P10145 99 aa2.4□□□□□ -2.03
VPS13D-207ENST00000476169 AZU1P20160 251 aa2.4□□□□□ -2.03
VPS13D-207ENST00000476169 SDC4P31431 198 aa2.4□□□□□ -2.03
VPS13D-207ENST00000476169 SDC2P34741 201 aa2.4□□□□□ -2.03
VPS13D-207ENST00000476169 SLC38A11Q08AI6 406 aa2.4□□□□□ -2.03
VPS13D-207ENST00000476169 LY6EQ16553 131 aa2.4□□□□□ -2.03
VPS13D-207ENST00000476169 PABPC1L2AQ5JQF8 200 aa2.4□□□□□ -2.03
VPS13D-207ENST00000476169 FAM27BQ5VT28 67 aa2.4□□□□□ -2.03
VPS13D-207ENST00000476169 C4orf22Q6V702 233 aa2.4□□□□□ -2.03
VPS13D-207ENST00000476169 AAED1Q7RTV5 226 aa2.4□□□□□ -2.03
VPS13D-207ENST00000476169 PRR15Q8IV56 129 aa2.4□□□□□ -2.03
VPS13D-207ENST00000476169 PDZD9Q8IXQ8 264 aa2.4□□□□□ -2.03
VPS13D-207ENST00000476169 OR8J3Q8NGG0 315 aa2.4□□□□□ -2.03
VPS13D-207ENST00000476169 LCTP09848 1927 aa2.4□□□□□ -2.03
VPS13D-207ENST00000476169 MYH13Q9UKX3 1938 aa2.4□□□□□ -2.03
VPS13D-207ENST00000476169 PLXND1Q9Y4D7 1925 aa2.4□□□□□ -2.03
VPS13D-207ENST00000476169 ECM29Q5VYK3 1845 aa2.4□□□□□ -2.03
VPS13D-207ENST00000476169 ARID1AO14497 2285 aa2.39□□□□□ -2.03
VPS13D-207ENST00000476169 TRBV10-2A0A0K0K1G8 114 aa2.39□□□□□ -2.03
VPS13D-207ENST00000476169 C9JAW5 83 aa2.39□□□□□ -2.03
VPS13D-207ENST00000476169 G3V3Q6 166 aa2.39□□□□□ -2.03
VPS13D-207ENST00000476169 C3orf84H3BNL1 204 aa2.39□□□□□ -2.03
VPS13D-207ENST00000476169 RTL8CO15255 209 aa2.39□□□□□ -2.03
VPS13D-207ENST00000476169 NDUFA2O43678 99 aa2.39□□□□□ -2.03
VPS13D-207ENST00000476169 TNFSF15O95150 251 aa2.39□□□□□ -2.03
VPS13D-207ENST00000476169 CTSGP08311 255 aa2.39□□□□□ -2.03
VPS13D-207ENST00000476169 HTR1AP08908 422 aa2.39□□□□□ -2.03
VPS13D-207ENST00000476169 TRGC1P0CF51 173 aa2.39□□□□□ -2.03
VPS13D-207ENST00000476169 CRYGAP11844 174 aa2.39□□□□□ -2.03
VPS13D-207ENST00000476169 GPX2P18283 190 aa2.39□□□□□ -2.03
VPS13D-207ENST00000476169 RNASE4P34096 147 aaKnown RBP2.39□□□□□ -2.03
VPS13D-207ENST00000476169 FXYD2P54710 66 aa2.39□□□□□ -2.03
VPS13D-207ENST00000476169 KRTAP12-2P59991 146 aa2.39□□□□□ -2.03
VPS13D-207ENST00000476169 HBBP68871 147 aa2.39□□□□□ -2.03
VPS13D-207ENST00000476169 SOSTDC1Q6X4U4 206 aa2.39□□□□□ -2.03
VPS13D-207ENST00000476169 ZNF720Q7Z2F6 126 aa2.39□□□□□ -2.03
VPS13D-207ENST00000476169 TCTE3Q8IZS6 198 aa2.39□□□□□ -2.03
VPS13D-207ENST00000476169 DYNAPQ8N1N2 210 aa2.39□□□□□ -2.03
VPS13D-207ENST00000476169 SLC30A7Q8NEW0 376 aa2.39□□□□□ -2.03
VPS13D-207ENST00000476169 OR4K15Q8NH41 348 aa2.39□□□□□ -2.03
VPS13D-207ENST00000476169 HIGD1AQ9Y241 93 aa2.39□□□□□ -2.03
VPS13D-207ENST00000476169 RNF11Q9Y3C5 154 aa2.39□□□□□ -2.03
VPS13D-207ENST00000476169 LRRC37A2A6NM11 1700 aa2.39□□□□□ -2.03
VPS13D-207ENST00000476169 PCNTO95613 3336 aa2.39□□□□□ -2.03
VPS13D-207ENST00000476169 TRAV5A0A0B4J249 113 aa2.38□□□□□ -2.03
VPS13D-207ENST00000476169 IGHV1-18A0A0C4DH31 117 aa2.38□□□□□ -2.03
VPS13D-207ENST00000476169 A0A1B0GVG6 124 aa2.38□□□□□ -2.03
VPS13D-207ENST00000476169 C7orf71A4D174 169 aa2.38□□□□□ -2.03
VPS13D-207ENST00000476169 LRCOL1A6NCL2 159 aa2.38□□□□□ -2.03
VPS13D-207ENST00000476169 ARRDC5A6NEK1 342 aa2.38□□□□□ -2.03
VPS13D-207ENST00000476169 K7ERJ3 54 aa2.38□□□□□ -2.03
VPS13D-207ENST00000476169 DPM2O94777 84 aa2.38□□□□□ -2.03
VPS13D-207ENST00000476169 OR2H2O95918 312 aa2.38□□□□□ -2.03
VPS13D-207ENST00000476169 UBBP0CG47 229 aa2.38□□□□□ -2.03
VPS13D-207ENST00000476169 HLA-EP13747 358 aa2.38□□□□□ -2.03
VPS13D-207ENST00000476169 TMEM258P61165 79 aa2.38□□□□□ -2.03
VPS13D-207ENST00000476169 ERHP84090 104 aaKnown RBP2.38□□□□□ -2.03
VPS13D-207ENST00000476169 PSG9Q00887 426 aa2.38□□□□□ -2.03
VPS13D-207ENST00000476169 NDUFA5Q16718 116 aa2.38□□□□□ -2.03
VPS13D-207ENST00000476169 VMA21Q3ZAQ7 101 aa2.38□□□□□ -2.03
VPS13D-207ENST00000476169 LINC00305Q7Z4B0 112 aa2.38□□□□□ -2.03
VPS13D-207ENST00000476169 TEX29Q8N6K0 151 aa2.38□□□□□ -2.03
VPS13D-207ENST00000476169 TSTD1Q8NFU3 115 aa2.38□□□□□ -2.03
VPS13D-207ENST00000476169 OR4X2Q8NGF9 303 aa2.38□□□□□ -2.03
VPS13D-207ENST00000476169 AQP3Q92482 292 aa2.38□□□□□ -2.03
VPS13D-207ENST00000476169 CALML5Q9NZT1 146 aa2.38□□□□□ -2.03
VPS13D-207ENST00000476169 BRCA2P51587 3418 aa2.38□□□□□ -2.03
VPS13D-207ENST00000476169 LAMB1P07942 1786 aa2.38□□□□□ -2.03
VPS13D-207ENST00000476169 MYO5AQ9Y4I1 1855 aaKnown RBP2.37□□□□□ -2.03
VPS13D-207ENST00000476169 IGHV3-64A0A075B6Q5 118 aa2.37□□□□□ -2.03
VPS13D-207ENST00000476169 MEIS3P1A6NDR6 274 aa2.37□□□□□ -2.03
VPS13D-207ENST00000476169 LOC730098B7Z3J9 87 aa2.37□□□□□ -2.03
VPS13D-207ENST00000476169 CCL16O15467 120 aa2.37□□□□□ -2.03
VPS13D-207ENST00000476169 MT-ND6P03923 174 aa2.37□□□□□ -2.03
VPS13D-207ENST00000476169 IFNA4P05014 189 aa2.37□□□□□ -2.03
VPS13D-207ENST00000476169 PAEPP09466 180 aa2.37□□□□□ -2.03
VPS13D-207ENST00000476169 METTL15P1P0C7V9 234 aa2.37□□□□□ -2.03
VPS13D-207ENST00000476169 RPL35P42766 123 aaKnown RBP2.37□□□□□ -2.03
VPS13D-207ENST00000476169 DYNLT1P63172 113 aa2.37□□□□□ -2.03
VPS13D-207ENST00000476169 LCN15Q6UWW0 184 aa2.37□□□□□ -2.03
VPS13D-207ENST00000476169 LRRC28Q86X40 367 aaPredicted RBP2.37□□□□□ -2.03
VPS13D-207ENST00000476169 Q8NDZ9 215 aa2.37□□□□□ -2.03
VPS13D-207ENST00000476169 PKMYT1Q99640 499 aa2.37□□□□□ -2.03
VPS13D-207ENST00000476169 ZNF471Q9BX82 626 aaPredicted RBP2.37□□□□□ -2.03
VPS13D-207ENST00000476169 SMIM3Q9BZL3 60 aa2.37□□□□□ -2.03
VPS13D-207ENST00000476169 NDUFB11Q9NX14 153 aa2.37□□□□□ -2.03
VPS13D-207ENST00000476169 BAIAP2Q9UQB8 552 aa2.37□□□□□ -2.03
VPS13D-207ENST00000476169 HS3ST2Q9Y278 367 aa2.37□□□□□ -2.03
VPS13D-207ENST00000476169 MYH11P35749 1972 aa2.37□□□□□ -2.03
VPS13D-207ENST00000476169 FOCADQ5VW36 1801 aa2.37□□□□□ -2.03
VPS13D-207ENST00000476169 TRIOBPQ9H2D6 2365 aa2.36□□□□□ -2.03
VPS13D-207ENST00000476169 KIAA0100Q14667 2235 aaKnown RBP2.36□□□□□ -2.03
VPS13D-207ENST00000476169 IGHV1-58A0A0C4DH39 117 aa2.36□□□□□ -2.03
VPS13D-207ENST00000476169 A0A1W2PNM2 257 aa2.36□□□□□ -2.03
VPS13D-207ENST00000476169 HMSDA8MTL9 139 aa2.36□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 100.7 ms