RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 TRBV20OR9-2A0A075B6H5 130 aa1.12□□□□□ -2.23
VPS41-207ENST00000439468 MEIS3P1A6NDR6 274 aa1.12□□□□□ -2.23
VPS41-207ENST00000439468 OR51F1A6NGY5 319 aa1.12□□□□□ -2.23
VPS41-207ENST00000439468 SULT1A3P0DMM9 295 aa1.12□□□□□ -2.23
VPS41-207ENST00000439468 SULT1A4P0DMN0 295 aa1.12□□□□□ -2.23
VPS41-207ENST00000439468 EMP1P54849 157 aa1.12□□□□□ -2.23
VPS41-207ENST00000439468 SPCS3P61009 180 aa1.12□□□□□ -2.23
VPS41-207ENST00000439468 MAGOHP61326 146 aaKnown RBP1.12□□□□□ -2.23
VPS41-207ENST00000439468 OR2F1Q13607 317 aa1.12□□□□□ -2.23
VPS41-207ENST00000439468 GRK1Q15835 563 aa1.12□□□□□ -2.23
VPS41-207ENST00000439468 ARHGAP11BQ3KRB8 267 aa1.12□□□□□ -2.23
VPS41-207ENST00000439468 GLT8D1Q68CQ7 371 aa1.12□□□□□ -2.23
VPS41-207ENST00000439468 Q6ZS49 121 aa1.12□□□□□ -2.23
VPS41-207ENST00000439468 FP248Q71RG6 208 aaPredicted RBP1.12□□□□□ -2.23
VPS41-207ENST00000439468 C9orf163Q8N9P6 203 aa1.12□□□□□ -2.23
VPS41-207ENST00000439468 PPP1R2P1Q96PQ5 205 aa1.12□□□□□ -2.23
VPS41-207ENST00000439468 WDR61Q9GZS3 305 aaKnown RBP1.12□□□□□ -2.23
VPS41-207ENST00000439468 TCEAL2Q9H3H9 227 aaPredicted RBP1.12□□□□□ -2.23
VPS41-207ENST00000439468 CST9LQ9H4G1 147 aa1.12□□□□□ -2.23
VPS41-207ENST00000439468 ALPK2Q86TB3 2170 aa1.11□□□□□ -2.23
VPS41-207ENST00000439468 DOCK4Q8N1I0 1966 aa1.11□□□□□ -2.23
VPS41-207ENST00000439468 TRBV6-5A0A0K0K1A5 114 aa1.11□□□□□ -2.23
VPS41-207ENST00000439468 IGKV2-29A2NJV5 120 aaPredicted RBP1.11□□□□□ -2.23
VPS41-207ENST00000439468 IBA57-AS1B1ANH7 110 aa1.11□□□□□ -2.23
VPS41-207ENST00000439468 K7EIL1 84 aa1.11□□□□□ -2.23
VPS41-207ENST00000439468 STATHP02808 62 aa1.11□□□□□ -2.23
VPS41-207ENST00000439468 RPS17P08708 135 aaKnown RBP1.11□□□□□ -2.23
VPS41-207ENST00000439468 POLR2GP62487 172 aaKnown RBP eCLIP1.11□□□□□ -2.23
VPS41-207ENST00000439468 HIST1H4AP62805 103 aaKnown RBP1.11□□□□□ -2.23
VPS41-207ENST00000439468 CAV1Q03135 178 aa1.11□□□□□ -2.23
VPS41-207ENST00000439468 RPL18Q07020 188 aaKnown RBP1.11□□□□□ -2.23
VPS41-207ENST00000439468 KCNJ8Q15842 424 aa1.11□□□□□ -2.23
VPS41-207ENST00000439468 LELP1Q5T871 98 aa1.11□□□□□ -2.23
VPS41-207ENST00000439468 TMEM86AQ8N2M4 240 aa1.11□□□□□ -2.23
VPS41-207ENST00000439468 C10orf126Q8N4M7 172 aa1.11□□□□□ -2.23
VPS41-207ENST00000439468 CT55Q8WUE5 264 aa1.11□□□□□ -2.23
VPS41-207ENST00000439468 REG4Q9BYZ8 158 aa1.11□□□□□ -2.23
VPS41-207ENST00000439468 PARVGQ9HBI0 331 aa1.11□□□□□ -2.23
VPS41-207ENST00000439468 DNAH17Q9UFH2 4485 aa1.11□□□□□ -2.23
VPS41-207ENST00000439468 CHP2O43745 196 aa1.1□□□□□ -2.23
VPS41-207ENST00000439468 IGKV1-5P01602 117 aa1.1□□□□□ -2.23
VPS41-207ENST00000439468 PRM2P04554 102 aa1.1□□□□□ -2.23
VPS41-207ENST00000439468 OR5G3P0C626 314 aa1.1□□□□□ -2.23
VPS41-207ENST00000439468 RPS4Y1P22090 263 aaKnown RBP1.1□□□□□ -2.23
VPS41-207ENST00000439468 RPS20P60866 119 aaKnown RBP1.1□□□□□ -2.23
VPS41-207ENST00000439468 NNATQ16517 81 aa1.1□□□□□ -2.23
VPS41-207ENST00000439468 IMPG1Q17R60 797 aa1.1□□□□□ -2.23
VPS41-207ENST00000439468 AADACL3Q5VUY0 350 aa1.1□□□□□ -2.23
VPS41-207ENST00000439468 C1orf158Q8N1D5 194 aa1.1□□□□□ -2.23
VPS41-207ENST00000439468 C15orf53Q8NAA6 179 aa1.1□□□□□ -2.23
VPS41-207ENST00000439468 ZNF439Q8NDP4 499 aa1.1□□□□□ -2.23
VPS41-207ENST00000439468 OR8J2Q8NGG1 315 aa1.1□□□□□ -2.23
VPS41-207ENST00000439468 DERL1Q9BUN8 251 aa1.1□□□□□ -2.23
VPS41-207ENST00000439468 C11orf68Q9H3H3 251 aaKnown RBP1.1□□□□□ -2.23
VPS41-207ENST00000439468 FBXL12Q9NXK8 326 aa1.1□□□□□ -2.23
VPS41-207ENST00000439468 RSL24D1Q9UHA3 163 aaKnown RBP1.1□□□□□ -2.23
VPS41-207ENST00000439468 VPS13BQ7Z7G8 4022 aa1.09□□□□□ -2.23
VPS41-207ENST00000439468 LRP1BQ9NZR2 4599 aa1.09□□□□□ -2.23
VPS41-207ENST00000439468 SPTBP11277 2137 aa1.09□□□□□ -2.23
VPS41-207ENST00000439468 TRBV10-2A0A0K0K1G8 114 aa1.09□□□□□ -2.23
VPS41-207ENST00000439468 SPTY2D1-AS1A0A0U1RR47 76 aa1.09□□□□□ -2.23
VPS41-207ENST00000439468 FAAHO00519 579 aa1.09□□□□□ -2.23
VPS41-207ENST00000439468 SLC22A1O15245 554 aa1.09□□□□□ -2.23
VPS41-207ENST00000439468 CLPSP04118 112 aa1.09□□□□□ -2.23
VPS41-207ENST00000439468 SHBGP04278 402 aa1.09□□□□□ -2.23
VPS41-207ENST00000439468 IFNA16P05015 189 aa1.09□□□□□ -2.23
VPS41-207ENST00000439468 LYNX1P0DP58 116 aa1.09□□□□□ -2.23
VPS41-207ENST00000439468 AKR1C3P42330 323 aa1.09□□□□□ -2.23
VPS41-207ENST00000439468 RPL5P46777 297 aaKnown RBP1.09□□□□□ -2.23
VPS41-207ENST00000439468 UBE2IP63279 158 aaKnown RBP1.09□□□□□ -2.23
VPS41-207ENST00000439468 CCDC122Q5T0U0 273 aa1.09□□□□□ -2.23
VPS41-207ENST00000439468 SYPL2Q5VXT5 272 aa1.09□□□□□ -2.23
VPS41-207ENST00000439468 MRPL30Q8TCC3 161 aaKnown RBP1.09□□□□□ -2.23
VPS41-207ENST00000439468 MBD3L1Q8WWY6 194 aa1.09□□□□□ -2.23
VPS41-207ENST00000439468 CCDC42Q96M95 316 aa1.09□□□□□ -2.23
VPS41-207ENST00000439468 CCL19Q99731 98 aa1.09□□□□□ -2.23
VPS41-207ENST00000439468 NAA38Q9BRA0 125 aaKnown RBP1.09□□□□□ -2.23
VPS41-207ENST00000439468 ULBP3Q9BZM4 244 aa1.09□□□□□ -2.23
VPS41-207ENST00000439468 BAIAP2Q9UQB8 552 aa1.09□□□□□ -2.23
VPS41-207ENST00000439468 LRP1Q07954 4544 aaKnown RBP1.08□□□□□ -2.24
VPS41-207ENST00000439468 PKHD1L1Q86WI1 4243 aa1.08□□□□□ -2.24
VPS41-207ENST00000439468 FABP5P3A8MUU1 101 aa1.08□□□□□ -2.24
VPS41-207ENST00000439468 PSMD12O00232 456 aaPredicted RBP1.08□□□□□ -2.24
VPS41-207ENST00000439468 NOS1APO75052 506 aaPredicted RBP1.08□□□□□ -2.24
VPS41-207ENST00000439468 HLA-DRB1P01911 266 aa1.08□□□□□ -2.24
VPS41-207ENST00000439468 CD79AP11912 226 aa1.08□□□□□ -2.24
VPS41-207ENST00000439468 HIST1H1TP22492 207 aaPredicted RBP1.08□□□□□ -2.24
VPS41-207ENST00000439468 SULT1A1P50225 295 aa1.08□□□□□ -2.24
VPS41-207ENST00000439468 SNRPD2P62316 118 aaKnown RBP1.08□□□□□ -2.24
VPS41-207ENST00000439468 HBA1P69905 142 aa1.08□□□□□ -2.24
VPS41-207ENST00000439468 CCL20P78556 96 aa1.08□□□□□ -2.24
VPS41-207ENST00000439468 RUNX1Q01196 453 aa1.08□□□□□ -2.24
VPS41-207ENST00000439468 HIST3H3Q16695 136 aa1.08□□□□□ -2.24
VPS41-207ENST00000439468 Q1T7F1 81 aa1.08□□□□□ -2.24
VPS41-207ENST00000439468 IMP4Q96G21 291 aaKnown RBP1.08□□□□□ -2.24
VPS41-207ENST00000439468 C8orf76Q96K31 380 aa1.08□□□□□ -2.24
VPS41-207ENST00000439468 HEATR5BQ9P2D3 2071 aa1.08□□□□□ -2.24
VPS41-207ENST00000439468 FAM236DA0A1B0GTK5 79 aa1.07□□□□□ -2.24
VPS41-207ENST00000439468 A0A1B0GV50 99 aa1.07□□□□□ -2.24
VPS41-207ENST00000439468 CLDN24A6NM45 220 aa1.07□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 164 ms