RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 NRGNQ92686 78 aa8.86□□□□□ -0.99
CUX1-204ENST00000393824 LINC00574Q9H8X3 128 aa8.86□□□□□ -0.99
CUX1-204ENST00000393824 HILPDAQ9Y5L2 63 aa8.86□□□□□ -0.99
CUX1-204ENST00000393824 DSCAMO60469 2012 aa8.85□□□□□ -0.99
CUX1-204ENST00000393824 TEX50A0A1B0GTY4 177 aa8.85□□□□□ -0.99
CUX1-204ENST00000393824 MEF2CQ06413 473 aaPredicted RBP8.85□□□□□ -0.99
CUX1-204ENST00000393824 TMEM177Q53S58 311 aa8.85□□□□□ -0.99
CUX1-204ENST00000393824 GATD1Q8NB37 220 aa8.85□□□□□ -0.99
CUX1-204ENST00000393824 FMC1Q96HJ9 113 aa8.85□□□□□ -0.99
CUX1-204ENST00000393824 DYSFO75923 2080 aa8.85□□□□□ -0.99
CUX1-204ENST00000393824 UNC79Q9P2D8 2635 aa8.85□□□□□ -0.99
CUX1-204ENST00000393824 OVOL3O00110 214 aa8.85□□□□□ -0.99
CUX1-204ENST00000393824 SLC25A5P05141 298 aaKnown RBP8.85□□□□□ -0.99
CUX1-204ENST00000393824 SAMD5Q5TGI4 173 aa8.85□□□□□ -0.99
CUX1-204ENST00000393824 C11orf71Q6IPW1 123 aa8.85□□□□□ -0.99
CUX1-204ENST00000393824 FOXI2Q6ZQN5 318 aa8.85□□□□□ -0.99
CUX1-204ENST00000393824 FA2HQ7L5A8 372 aa8.85□□□□□ -0.99
CUX1-204ENST00000393824 PDPNQ86YL7 162 aa8.85□□□□□ -0.99
CUX1-204ENST00000393824 BLNKQ8WV28 456 aa8.85□□□□□ -0.99
CUX1-204ENST00000393824 RAB37Q96AX2 223 aa8.85□□□□□ -0.99
CUX1-204ENST00000393824 DYNLRB1Q9NP97 96 aa8.85□□□□□ -0.99
CUX1-204ENST00000393824 NAV2Q8IVL1 2488 aa8.85□□□□□ -0.99
CUX1-204ENST00000393824 ZANQ9Y493 2812 aa8.84□□□□□ -0.99
CUX1-204ENST00000393824 B9A039 149 aa8.84□□□□□ -0.99
CUX1-204ENST00000393824 LHBP01229 141 aa8.84□□□□□ -0.99
CUX1-204ENST00000393824 IGHV3-7P01780 117 aa8.84□□□□□ -0.99
CUX1-204ENST00000393824 CSN3P07498 182 aa8.84□□□□□ -0.99
CUX1-204ENST00000393824 GATA4P43694 442 aa8.84□□□□□ -0.99
CUX1-204ENST00000393824 DAZAP1Q96EP5 407 aaKnown RBP8.84□□□□□ -0.99
CUX1-204ENST00000393824 UBTD1Q9HAC8 227 aa8.84□□□□□ -0.99
CUX1-204ENST00000393824 INSIG2Q9Y5U4 225 aa8.84□□□□□ -0.99
CUX1-204ENST00000393824 PGPA6NDG6 321 aa8.83□□□□□ -1
CUX1-204ENST00000393824 J3QR89 54 aa8.83□□□□□ -1
CUX1-204ENST00000393824 OR5AN1Q8NGI8 311 aa8.83□□□□□ -1
CUX1-204ENST00000393824 CCL17Q92583 94 aa8.83□□□□□ -1
CUX1-204ENST00000393824 SGK494Q96LW2 274 aa8.83□□□□□ -1
CUX1-204ENST00000393824 FAM110AQ9BQ89 295 aa8.83□□□□□ -1
CUX1-204ENST00000393824 A0A096LNJ9 63 aa8.83□□□□□ -1
CUX1-204ENST00000393824 FCN3O75636 299 aa8.83□□□□□ -1
CUX1-204ENST00000393824 SMIM13P0DJ93 91 aa8.83□□□□□ -1
CUX1-204ENST00000393824 ERHP84090 104 aaKnown RBP8.83□□□□□ -1
CUX1-204ENST00000393824 ODF1Q14990 250 aa8.83□□□□□ -1
CUX1-204ENST00000393824 SLC25A48Q6ZT89 311 aaKnown RBP8.83□□□□□ -1
CUX1-204ENST00000393824 DEFB108BQ8NET1 73 aa8.83□□□□□ -1
CUX1-204ENST00000393824 VGLL1Q99990 258 aa8.83□□□□□ -1
CUX1-204ENST00000393824 SS18L2Q9UHA2 77 aa8.83□□□□□ -1
CUX1-204ENST00000393824 TCRBV4S1A1TA0A5B7 111 aa8.82□□□□□ -1
CUX1-204ENST00000393824 J3QKU1 62 aa8.82□□□□□ -1
CUX1-204ENST00000393824 HERV-K104P63124 156 aa8.82□□□□□ -1
CUX1-204ENST00000393824 ZNRF1Q8ND25 227 aa8.82□□□□□ -1
CUX1-204ENST00000393824 PRSS3P2Q8NHM4 247 aa8.82□□□□□ -1
CUX1-204ENST00000393824 OSR1Q8TAX0 266 aaPredicted RBP8.82□□□□□ -1
CUX1-204ENST00000393824 TIMM8BQ9Y5J9 83 aaPredicted RBP8.82□□□□□ -1
CUX1-204ENST00000393824 RAI1Q7Z5J4 1906 aaPredicted RBP8.82□□□□□ -1
CUX1-204ENST00000393824 UTF1Q5T230 341 aa8.82□□□□□ -1
CUX1-204ENST00000393824 PIFOQ8TCI5 191 aa8.82□□□□□ -1
CUX1-204ENST00000393824 NDUFA4L2Q9NRX3 87 aa8.82□□□□□ -1
CUX1-204ENST00000393824 CCDC168Q8NDH2 2452 aa8.81□□□□□ -1
CUX1-204ENST00000393824 IGKV1D-37A0A075B6S9 117 aa8.81□□□□□ -1
CUX1-204ENST00000393824 A0A1B0GUT8 65 aa8.81□□□□□ -1
CUX1-204ENST00000393824 TCRAP04437 139 aa8.81□□□□□ -1
CUX1-204ENST00000393824 CT45A6P0DMU7 189 aa8.81□□□□□ -1
CUX1-204ENST00000393824 CT45A5P0DMU8 189 aa8.81□□□□□ -1
CUX1-204ENST00000393824 CT45A7P0DMV0 189 aa8.81□□□□□ -1
CUX1-204ENST00000393824 KRTAP10-9P60411 292 aa8.81□□□□□ -1
CUX1-204ENST00000393824 SSBP2P81877 361 aaPredicted RBP8.81□□□□□ -1
CUX1-204ENST00000393824 LINC00305Q7Z4B0 112 aa8.81□□□□□ -1
CUX1-204ENST00000393824 DTX2Q86UW9 622 aa8.81□□□□□ -1
CUX1-204ENST00000393824 THAP8Q8NA92 274 aa8.81□□□□□ -1
CUX1-204ENST00000393824 TMEM190Q8WZ59 177 aa8.81□□□□□ -1
CUX1-204ENST00000393824 MRPL16Q9NX20 251 aaKnown RBP8.81□□□□□ -1
CUX1-204ENST00000393824 SIGLEC8Q9NYZ4 499 aa8.81□□□□□ -1
CUX1-204ENST00000393824 PSG8Q9UQ74 426 aa8.81□□□□□ -1
CUX1-204ENST00000393824 TNCP24821 2201 aa8.81□□□□□ -1
CUX1-204ENST00000393824 ANKRD17O75179 2603 aaKnown RBP8.81□□□□□ -1
CUX1-204ENST00000393824 A0A1B0GW15 77 aa8.81□□□□□ -1
CUX1-204ENST00000393824 F8W1H4 67 aa8.81□□□□□ -1
CUX1-204ENST00000393824 CT45A10P0DMU9 189 aa8.81□□□□□ -1
CUX1-204ENST00000393824 RIGQ13278 110 aa8.81□□□□□ -1
CUX1-204ENST00000393824 TRBV7-9A0A0J9YWB2 115 aa8.8□□□□□ -1
CUX1-204ENST00000393824 CLEC3BP05452 202 aa8.8□□□□□ -1
CUX1-204ENST00000393824 SUB1P53999 127 aaKnown RBP eCLIP8.8□□□□□ -1
CUX1-204ENST00000393824 PSMG4Q5JS54 123 aa8.8□□□□□ -1
CUX1-204ENST00000393824 TMEM116Q8NCL8 245 aa8.8□□□□□ -1
CUX1-204ENST00000393824 OR8A1Q8NGG7 326 aa8.8□□□□□ -1
CUX1-204ENST00000393824 LEAP2Q969E1 77 aa8.8□□□□□ -1
CUX1-204ENST00000393824 HIGD1BQ9P298 99 aa8.8□□□□□ -1
CUX1-204ENST00000393824 RNF7Q9UBF6 113 aa8.8□□□□□ -1
CUX1-204ENST00000393824 NOTCH2Q04721 2471 aa8.8□□□□□ -1
CUX1-204ENST00000393824 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.8□□□□□ -1
CUX1-204ENST00000393824 TMEM178BH3BS89 294 aa8.8□□□□□ -1
CUX1-204ENST00000393824 FAM216BQ8N7L0 139 aa8.8□□□□□ -1
CUX1-204ENST00000393824 NPIPB3Q92617 1050 aa8.8□□□□□ -1
CUX1-204ENST00000393824 SPANXB1Q9NS25 103 aaPredicted RBP8.8□□□□□ -1
CUX1-204ENST00000393824 RPUSD1Q9UJJ7 312 aaKnown RBP8.8□□□□□ -1
CUX1-204ENST00000393824 IGKV1-16P04430 117 aa8.79□□□□□ -1
CUX1-204ENST00000393824 SAA1P0DJI8 122 aaPredicted RBP8.79□□□□□ -1
CUX1-204ENST00000393824 TNFRSF1AP19438 455 aa8.79□□□□□ -1
CUX1-204ENST00000393824 FCGR2BP31994 310 aaPredicted RBP8.79□□□□□ -1
CUX1-204ENST00000393824 ZNF833PQ6ZTB9 187 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 79.6 ms