RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 IGHV3-43A0A0B4J1X8 118 aa3.92□□□□□ -1.78
PCDH9-201ENST00000377861 IGHV3-43DP0DP04 118 aa3.92□□□□□ -1.78
PCDH9-201ENST00000377861 MSRB2Q9Y3D2 182 aa3.92□□□□□ -1.78
PCDH9-201ENST00000377861 C2orf70A6NJV1 201 aa3.92□□□□□ -1.78
PCDH9-201ENST00000377861 CTSGP08311 255 aa3.92□□□□□ -1.78
PCDH9-201ENST00000377861 SLC25A29Q8N8R3 303 aa3.92□□□□□ -1.78
PCDH9-201ENST00000377861 TOMM6Q96B49 74 aa3.92□□□□□ -1.78
PCDH9-201ENST00000377861 RALGAPA2Q2PPJ7 1873 aa3.92□□□□□ -1.78
PCDH9-201ENST00000377861 ZNF418Q8TF45 676 aaPredicted RBP3.92□□□□□ -1.78
PCDH9-201ENST00000377861 PLXNA1Q9UIW2 1896 aa3.91□□□□□ -1.78
PCDH9-201ENST00000377861 UBE2L6O14933 153 aa3.91□□□□□ -1.78
PCDH9-201ENST00000377861 HILPDAQ9Y5L2 63 aa3.91□□□□□ -1.78
PCDH9-201ENST00000377861 D6R8Y8 96 aa3.91□□□□□ -1.78
PCDH9-201ENST00000377861 NXPH3O95157 252 aa3.91□□□□□ -1.78
PCDH9-201ENST00000377861 FAM27E3Q08E93 113 aa3.91□□□□□ -1.78
PCDH9-201ENST00000377861 ZC2HC1BQ5TFG8 222 aa3.91□□□□□ -1.78
PCDH9-201ENST00000377861 NDUFS7O75251 213 aa3.91□□□□□ -1.78
PCDH9-201ENST00000377861 PRSS57Q6UWY2 283 aa3.91□□□□□ -1.78
PCDH9-201ENST00000377861 ZNHIT1O43257 154 aa3.91□□□□□ -1.78
PCDH9-201ENST00000377861 ZNF688P0C7X2 276 aa3.91□□□□□ -1.78
PCDH9-201ENST00000377861 LINC00643Q86TS7 51 aa3.91□□□□□ -1.78
PCDH9-201ENST00000377861 IGF2BP2-AS1Q96M15 143 aa3.91□□□□□ -1.78
PCDH9-201ENST00000377861 A0A1W2PRX2 142 aa3.91□□□□□ -1.78
PCDH9-201ENST00000377861 AGFG2O95081 481 aa3.91□□□□□ -1.78
PCDH9-201ENST00000377861 SCRT2Q9NQ03 307 aa3.91□□□□□ -1.78
PCDH9-201ENST00000377861 IGKV1-16P04430 117 aa3.91□□□□□ -1.78
PCDH9-201ENST00000377861 RPS28P62857 69 aaKnown RBP3.91□□□□□ -1.78
PCDH9-201ENST00000377861 A0A1W2PPI3 338 aa3.91□□□□□ -1.78
PCDH9-201ENST00000377861 VMO1Q7Z5L0 202 aa3.91□□□□□ -1.78
PCDH9-201ENST00000377861 UBE2E2Q96LR5 201 aa3.91□□□□□ -1.78
PCDH9-201ENST00000377861 CASP8AP2Q9UKL3 1982 aa3.91□□□□□ -1.78
PCDH9-201ENST00000377861 CDK5RAP2Q96SN8 1893 aa3.91□□□□□ -1.78
PCDH9-201ENST00000377861 FGFBP3Q8TAT2 258 aa3.91□□□□□ -1.78
PCDH9-201ENST00000377861 PPIFP30405 207 aaKnown RBP3.91□□□□□ -1.78
PCDH9-201ENST00000377861 FER1L6Q2WGJ9 1857 aa3.91□□□□□ -1.78
PCDH9-201ENST00000377861 LOC389332A0A1B0GUA5 103 aa3.91□□□□□ -1.78
PCDH9-201ENST00000377861 TRBV27A0A0K0K1C4 114 aa3.91□□□□□ -1.78
PCDH9-201ENST00000377861 P0DMU3 169 aa3.91□□□□□ -1.78
PCDH9-201ENST00000377861 FAM231AP0DMU4 169 aa3.91□□□□□ -1.78
PCDH9-201ENST00000377861 FAM231CP0DMU5 169 aa3.91□□□□□ -1.78
PCDH9-201ENST00000377861 CXCL5P42830 114 aa3.91□□□□□ -1.78
PCDH9-201ENST00000377861 IGLV11-55A0A075B6I3 123 aa3.91□□□□□ -1.78
PCDH9-201ENST00000377861 LGALS9O00182 355 aa3.91□□□□□ -1.78
PCDH9-201ENST00000377861 GP9P14770 177 aa3.91□□□□□ -1.78
PCDH9-201ENST00000377861 RLFQ13129 1914 aa3.9□□□□□ -1.78
PCDH9-201ENST00000377861 OR13C6PQ8NH95 151 aa3.9□□□□□ -1.78
PCDH9-201ENST00000377861 ANXA2RQ3ZCQ2 193 aa3.9□□□□□ -1.78
PCDH9-201ENST00000377861 J3QQQ9 107 aa3.9□□□□□ -1.78
PCDH9-201ENST00000377861 TMEM256-PLSCR3K7ERE1 68 aa3.9□□□□□ -1.78
PCDH9-201ENST00000377861 COX17Q14061 63 aa3.9□□□□□ -1.78
PCDH9-201ENST00000377861 ANKHD1Q8IWZ3 2542 aaKnown RBP3.9□□□□□ -1.78
PCDH9-201ENST00000377861 OTOFQ9HC10 1997 aa3.9□□□□□ -1.78
PCDH9-201ENST00000377861 KIAA1644Q3SXP7 199 aa3.9□□□□□ -1.78
PCDH9-201ENST00000377861 FAM201AQ5SY85 155 aa3.9□□□□□ -1.78
PCDH9-201ENST00000377861 TTC28Q96AY4 2481 aa3.9□□□□□ -1.78
PCDH9-201ENST00000377861 TRBV30A0A0K0K1B3 111 aa3.9□□□□□ -1.78
PCDH9-201ENST00000377861 DUX3Q96PT4 197 aa3.9□□□□□ -1.78
PCDH9-201ENST00000377861 ADAMTSL1Q8N6G6 1762 aa3.9□□□□□ -1.78
PCDH9-201ENST00000377861 ANKRD39Q53RE8 183 aa3.9□□□□□ -1.78
PCDH9-201ENST00000377861 ANKRD29Q8N6D5 301 aa3.9□□□□□ -1.78
PCDH9-201ENST00000377861 FNDC4Q9H6D8 234 aaPredicted RBP3.9□□□□□ -1.79
PCDH9-201ENST00000377861 WDR87Q6ZQQ6 2873 aa3.9□□□□□ -1.79
PCDH9-201ENST00000377861 TMEM158Q8WZ71 300 aa3.9□□□□□ -1.79
PCDH9-201ENST00000377861 SH2D1AO60880 128 aa3.9□□□□□ -1.79
PCDH9-201ENST00000377861 IGKV1D-33P01593 117 aa3.9□□□□□ -1.79
PCDH9-201ENST00000377861 IGKV1-33P01594 117 aa3.9□□□□□ -1.79
PCDH9-201ENST00000377861 SBF2Q86WG5 1849 aa3.9□□□□□ -1.79
PCDH9-201ENST00000377861 MUC21A0A0G2JKD1 596 aa3.9□□□□□ -1.79
PCDH9-201ENST00000377861 MUC21A0A140T8X8 626 aa3.9□□□□□ -1.79
PCDH9-201ENST00000377861 C11orf86A6NJI1 115 aa3.9□□□□□ -1.79
PCDH9-201ENST00000377861 C12orf74Q32Q52 190 aa3.9□□□□□ -1.79
PCDH9-201ENST00000377861 MUC21Q5SSG8 566 aa3.9□□□□□ -1.79
PCDH9-201ENST00000377861 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP3.9□□□□□ -1.79
PCDH9-201ENST00000377861 LINC01561Q8N1V8 128 aa3.9□□□□□ -1.79
PCDH9-201ENST00000377861 CFAP161Q6P656 301 aa3.9□□□□□ -1.79
PCDH9-201ENST00000377861 MYO7AQ13402 2215 aa3.9□□□□□ -1.79
PCDH9-201ENST00000377861 PCM1Q15154 2024 aa3.9□□□□□ -1.79
PCDH9-201ENST00000377861 K7EN84 100 aa3.9□□□□□ -1.79
PCDH9-201ENST00000377861 ATOX1O00244 68 aa3.9□□□□□ -1.79
PCDH9-201ENST00000377861 CFC1BP0CG36 223 aa3.9□□□□□ -1.79
PCDH9-201ENST00000377861 CFC1P0CG37 223 aa3.9□□□□□ -1.79
PCDH9-201ENST00000377861 CKS1BP61024 79 aa3.9□□□□□ -1.79
PCDH9-201ENST00000377861 UBL5Q9BZL1 73 aa3.9□□□□□ -1.79
PCDH9-201ENST00000377861 DOCK6Q96HP0 2047 aa3.9□□□□□ -1.79
PCDH9-201ENST00000377861 TSC2P49815 1807 aa3.89□□□□□ -1.79
PCDH9-201ENST00000377861 SMIM9A6NGZ8 99 aa3.89□□□□□ -1.79
PCDH9-201ENST00000377861 TGIF1Q15583 401 aa3.89□□□□□ -1.79
PCDH9-201ENST00000377861 CACNA1AO00555 2505 aa3.89□□□□□ -1.79
PCDH9-201ENST00000377861 CRPP02741 224 aa3.89□□□□□ -1.79
PCDH9-201ENST00000377861 SPTAN1Q13813 2472 aaKnown RBP3.89□□□□□ -1.79
PCDH9-201ENST00000377861 CRIP2P52943 208 aaPredicted RBP3.89□□□□□ -1.79
PCDH9-201ENST00000377861 C2orf66Q6UXQ4 117 aa3.89□□□□□ -1.79
PCDH9-201ENST00000377861 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa3.89□□□□□ -1.79
PCDH9-201ENST00000377861 DYNLRB2Q8TF09 96 aa3.89□□□□□ -1.79
PCDH9-201ENST00000377861 TRBV25-1A0A075B6N4 114 aa3.89□□□□□ -1.79
PCDH9-201ENST00000377861 CD7P09564 240 aa3.89□□□□□ -1.79
PCDH9-201ENST00000377861 LOXP28300 417 aaPredicted RBP3.89□□□□□ -1.79
PCDH9-201ENST00000377861 SPRR3Q9UBC9 169 aa3.89□□□□□ -1.79
PCDH9-201ENST00000377861 IGHV3-7P01780 117 aa3.89□□□□□ -1.79
PCDH9-201ENST00000377861 CRYGBP07316 175 aa3.89□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms