RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 FAM19A2Q8N3H0 131 aa3.24□□□□□ -1.89
USH2A-202ENST00000366942 VAX2Q9UIW0 290 aa3.24□□□□□ -1.89
USH2A-202ENST00000366942 EPDR1Q9UM22 224 aa3.24□□□□□ -1.89
USH2A-202ENST00000366942 SPTBN4Q9H254 2564 aa3.24□□□□□ -1.89
USH2A-202ENST00000366942 SCN10AQ9Y5Y9 1956 aa3.24□□□□□ -1.89
USH2A-202ENST00000366942 MYH8P13535 1937 aa3.24□□□□□ -1.89
USH2A-202ENST00000366942 A0A1B0GUT8 65 aa3.24□□□□□ -1.89
USH2A-202ENST00000366942 A8MXK9 166 aa3.24□□□□□ -1.89
USH2A-202ENST00000366942 CHKB-CPT1BH3BT56 60 aa3.24□□□□□ -1.89
USH2A-202ENST00000366942 ZNF253O75346 499 aa3.24□□□□□ -1.89
USH2A-202ENST00000366942 PGLYRP1O75594 196 aaPredicted RBP3.24□□□□□ -1.89
USH2A-202ENST00000366942 DUTP33316 252 aaKnown RBP3.24□□□□□ -1.89
USH2A-202ENST00000366942 CRYBA2P53672 197 aa3.24□□□□□ -1.89
USH2A-202ENST00000366942 C1orf158Q8N1D5 194 aa3.24□□□□□ -1.89
USH2A-202ENST00000366942 OR11H6Q8NGC7 330 aa3.24□□□□□ -1.89
USH2A-202ENST00000366942 IGFBPL1Q8WX77 278 aa3.24□□□□□ -1.89
USH2A-202ENST00000366942 NPDC1Q9NQX5 325 aaPredicted RBP3.24□□□□□ -1.89
USH2A-202ENST00000366942 MYH7BA7E2Y1 1941 aa3.24□□□□□ -1.89
USH2A-202ENST00000366942 IGKV1-5P01602 117 aa3.23□□□□□ -1.89
USH2A-202ENST00000366942 NPSP0C0P6 89 aa3.23□□□□□ -1.89
USH2A-202ENST00000366942 SMIM13P0DJ93 91 aa3.23□□□□□ -1.89
USH2A-202ENST00000366942 SPATA12Q7Z6I5 190 aa3.23□□□□□ -1.89
USH2A-202ENST00000366942 COQ2Q96H96 371 aa3.23□□□□□ -1.89
USH2A-202ENST00000366942 TMEM222Q9H0R3 208 aa3.23□□□□□ -1.89
USH2A-202ENST00000366942 KIF26BQ2KJY2 2108 aa3.23□□□□□ -1.89
USH2A-202ENST00000366942 EVPLQ92817 2033 aa3.23□□□□□ -1.89
USH2A-202ENST00000366942 KNCNA6PVL3 124 aa3.23□□□□□ -1.89
USH2A-202ENST00000366942 LAGE3Q14657 143 aa3.23□□□□□ -1.89
USH2A-202ENST00000366942 SNAI3Q3KNW1 292 aa3.23□□□□□ -1.89
USH2A-202ENST00000366942 IBA57Q5T440 356 aaKnown RBP3.23□□□□□ -1.89
USH2A-202ENST00000366942 OTPQ5XKR4 325 aa3.23□□□□□ -1.89
USH2A-202ENST00000366942 ZAR1Q86SH2 424 aa3.23□□□□□ -1.89
USH2A-202ENST00000366942 SMIM8Q96KF7 97 aa3.23□□□□□ -1.89
USH2A-202ENST00000366942 LINC00846Q9NV44 126 aa3.23□□□□□ -1.89
USH2A-202ENST00000366942 HHLA3Q9XRX5 114 aa3.23□□□□□ -1.89
USH2A-202ENST00000366942 TRIP12Q14669 1992 aaPredicted RBP3.23□□□□□ -1.89
USH2A-202ENST00000366942 LOXHD1Q8IVV2 1947 aa3.23□□□□□ -1.89
USH2A-202ENST00000366942 CTRLP40313 264 aa3.23□□□□□ -1.89
USH2A-202ENST00000366942 CCDC140Q96MF4 163 aa3.23□□□□□ -1.89
USH2A-202ENST00000366942 ARFGEF1Q9Y6D6 1849 aa3.23□□□□□ -1.89
USH2A-202ENST00000366942 LAMB4A4D0S4 1761 aa3.23□□□□□ -1.89
USH2A-202ENST00000366942 MED13LQ71F56 2210 aa3.23□□□□□ -1.89
USH2A-202ENST00000366942 TRAV2A0A0B4J234 112 aa3.23□□□□□ -1.89
USH2A-202ENST00000366942 GAGE10A6NGK3 116 aa3.23□□□□□ -1.89
USH2A-202ENST00000366942 IGHG2P01859 326 aa3.23□□□□□ -1.89
USH2A-202ENST00000366942 LYPD2Q6UXB3 125 aa3.23□□□□□ -1.89
USH2A-202ENST00000366942 CASC2Q6XLA1 102 aa3.23□□□□□ -1.89
USH2A-202ENST00000366942 C8orf31Q8N9H6 132 aa3.23□□□□□ -1.89
USH2A-202ENST00000366942 ELF5Q9UKW6 265 aaPredicted RBP3.23□□□□□ -1.89
USH2A-202ENST00000366942 V9GYH0 126 aa3.23□□□□□ -1.89
USH2A-202ENST00000366942 IGHV3-64A0A075B6Q5 118 aa3.23□□□□□ -1.89
USH2A-202ENST00000366942 A0A1W2PPI3 338 aa3.23□□□□□ -1.89
USH2A-202ENST00000366942 K7EM74 188 aa3.23□□□□□ -1.89
USH2A-202ENST00000366942 PRYO14603 147 aa3.23□□□□□ -1.89
USH2A-202ENST00000366942 DANCRP0C864 163 aa3.23□□□□□ -1.89
USH2A-202ENST00000366942 HOXB4P17483 251 aaPredicted RBP3.23□□□□□ -1.89
USH2A-202ENST00000366942 DAPP51397 102 aa3.23□□□□□ -1.89
USH2A-202ENST00000366942 BSXQ3C1V8 233 aa3.23□□□□□ -1.89
USH2A-202ENST00000366942 OXLD1Q5BKU9 147 aa3.23□□□□□ -1.89
USH2A-202ENST00000366942 SMIM4Q8WVI0 70 aa3.23□□□□□ -1.89
USH2A-202ENST00000366942 FGF23Q9GZV9 251 aaPredicted RBP3.23□□□□□ -1.89
USH2A-202ENST00000366942 LIME1Q9H400 295 aa3.23□□□□□ -1.89
USH2A-202ENST00000366942 TMEM238C9JI98 176 aa3.22□□□□□ -1.89
USH2A-202ENST00000366942 SOCS1O15524 211 aa3.22□□□□□ -1.89
USH2A-202ENST00000366942 IGLV1-44P01699 117 aa3.22□□□□□ -1.89
USH2A-202ENST00000366942 ESDP10768 282 aa3.22□□□□□ -1.89
USH2A-202ENST00000366942 ZNF124Q15973 351 aa3.22□□□□□ -1.89
USH2A-202ENST00000366942 MAJINQ3KP22 176 aa3.22□□□□□ -1.89
USH2A-202ENST00000366942 Q96M66 194 aa3.22□□□□□ -1.89
USH2A-202ENST00000366942 MSRB1Q9NZV6 116 aa3.22□□□□□ -1.89
USH2A-202ENST00000366942 BCL2P10415 239 aa3.22□□□□□ -1.89
USH2A-202ENST00000366942 LIMD2Q9BT23 127 aa3.22□□□□□ -1.89
USH2A-202ENST00000366942 CHTOPQ9Y3Y2 248 aaKnown RBP3.22□□□□□ -1.89
USH2A-202ENST00000366942 A0A0G2JMZ2 1700 aa3.22□□□□□ -1.89
USH2A-202ENST00000366942 A0A096LPF7 62 aa3.22□□□□□ -1.89
USH2A-202ENST00000366942 IGKV3D-20A0A0C4DH25 116 aa3.22□□□□□ -1.89
USH2A-202ENST00000366942 C2orf70A6NJV1 201 aa3.22□□□□□ -1.89
USH2A-202ENST00000366942 C17orf98A8MV24 154 aa3.22□□□□□ -1.89
USH2A-202ENST00000366942 HBDP02042 147 aa3.22□□□□□ -1.89
USH2A-202ENST00000366942 CRYGBP07316 175 aa3.22□□□□□ -1.89
USH2A-202ENST00000366942 NDPQ00604 133 aa3.22□□□□□ -1.89
USH2A-202ENST00000366942 FABP5Q01469 135 aa3.22□□□□□ -1.89
USH2A-202ENST00000366942 MIC13Q5XKP0 118 aa3.22□□□□□ -1.89
USH2A-202ENST00000366942 CEMP1Q6PRD7 247 aaPredicted RBP3.22□□□□□ -1.89
USH2A-202ENST00000366942 AMTNQ6UX39 209 aa3.22□□□□□ -1.89
USH2A-202ENST00000366942 CRIPAKQ8N1N5 446 aa3.22□□□□□ -1.89
USH2A-202ENST00000366942 DERL1Q9BUN8 251 aa3.22□□□□□ -1.89
USH2A-202ENST00000366942 RBM38Q9H0Z9 239 aaKnown RBP3.22□□□□□ -1.89
USH2A-202ENST00000366942 PSG8Q9UQ74 426 aa3.22□□□□□ -1.89
USH2A-202ENST00000366942 TP53TG1Q9Y2A0 90 aa3.22□□□□□ -1.89
USH2A-202ENST00000366942 LENEPQ9Y5L5 61 aa3.22□□□□□ -1.89
USH2A-202ENST00000366942 MYH3P11055 1940 aa3.22□□□□□ -1.89
USH2A-202ENST00000366942 TRAV8-4A0A0B4J246 113 aa3.22□□□□□ -1.89
USH2A-202ENST00000366942 IGHV3-38A0A0C4DH36 116 aa3.22□□□□□ -1.89
USH2A-202ENST00000366942 A0A1W2PP11 408 aa3.22□□□□□ -1.89
USH2A-202ENST00000366942 ODF3BA8MYP8 253 aa3.22□□□□□ -1.89
USH2A-202ENST00000366942 H0YJW9 148 aa3.22□□□□□ -1.89
USH2A-202ENST00000366942 DEFB136Q30KP8 78 aa3.22□□□□□ -1.89
USH2A-202ENST00000366942 RPRMLQ8N4K4 120 aa3.22□□□□□ -1.89
USH2A-202ENST00000366942 RPP25LQ8N5L8 163 aaKnown RBP3.22□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms