RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 FAM120AOSQ5T036 256 aa13.88□□□□□ -0.19
SHANK1-201ENST00000293441 MST1LQ2TV78 715 aa13.88□□□□□ -0.19
SHANK1-201ENST00000293441 PIP4P1Q86T03 277 aa13.88□□□□□ -0.19
SHANK1-201ENST00000293441 HIST1H2BLQ99880 126 aa13.88□□□□□ -0.19
SHANK1-201ENST00000293441 FAM215AQ9Y5M1 114 aa13.88□□□□□ -0.19
SHANK1-201ENST00000293441 LINC01559Q495D7 138 aa13.88□□□□□ -0.19
SHANK1-201ENST00000293441 NDUFA4L2Q9NRX3 87 aa13.88□□□□□ -0.19
SHANK1-201ENST00000293441 LMO1P25800 156 aa13.87□□□□□ -0.19
SHANK1-201ENST00000293441 AZU1P20160 251 aa13.87□□□□□ -0.19
SHANK1-201ENST00000293441 HSD52Q0P140 79 aa13.87□□□□□ -0.19
SHANK1-201ENST00000293441 SPTBN1Q01082 2364 aaKnown RBP13.87□□□□□ -0.19
SHANK1-201ENST00000293441 NLRC5Q86WI3 1866 aa13.87□□□□□ -0.19
SHANK1-201ENST00000293441 NCOR1O75376 2440 aa13.87□□□□□ -0.19
SHANK1-201ENST00000293441 TRBV24-1A0A075B6N3 115 aa13.87□□□□□ -0.19
SHANK1-201ENST00000293441 PDE6HQ13956 83 aa13.87□□□□□ -0.19
SHANK1-201ENST00000293441 TRPT1Q86TN4 253 aaKnown RBP13.87□□□□□ -0.19
SHANK1-201ENST00000293441 ZNF479Q96JC4 524 aa13.87□□□□□ -0.19
SHANK1-201ENST00000293441 TRAV12-2A0A075B6T6 113 aa13.87□□□□□ -0.19
SHANK1-201ENST00000293441 hDV102S1A0JD36 115 aa13.87□□□□□ -0.19
SHANK1-201ENST00000293441 MEGF9Q9H1U4 602 aa13.87□□□□□ -0.19
SHANK1-201ENST00000293441 GAGE12BA1L429 117 aa13.86□□□□□ -0.19
SHANK1-201ENST00000293441 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.86□□□□□ -0.19
SHANK1-201ENST00000293441 GAGE7O76087 117 aa13.86□□□□□ -0.19
SHANK1-201ENST00000293441 AMBPP02760 352 aa13.86□□□□□ -0.19
SHANK1-201ENST00000293441 GAGE12FP0CL80 117 aa13.86□□□□□ -0.19
SHANK1-201ENST00000293441 GAGE12GP0CL81 117 aa13.86□□□□□ -0.19
SHANK1-201ENST00000293441 GAGE12IP0CL82 117 aa13.86□□□□□ -0.19
SHANK1-201ENST00000293441 MTURNQ8N3F0 131 aa13.86□□□□□ -0.19
SHANK1-201ENST00000293441 E9PQ18 207 aa13.86□□□□□ -0.19
SHANK1-201ENST00000293441 APOC4P55056 127 aa13.86□□□□□ -0.19
SHANK1-201ENST00000293441 IGLV3-9A0A075B6K5 115 aa13.86□□□□□ -0.19
SHANK1-201ENST00000293441 DOCK9Q9BZ29 2069 aa13.86□□□□□ -0.19
SHANK1-201ENST00000293441 SAMD5Q5TGI4 173 aa13.86□□□□□ -0.19
SHANK1-201ENST00000293441 PRB1P04280 392 aa13.85□□□□□ -0.19
SHANK1-201ENST00000293441 TMEM75Q8N9X5 138 aa13.85□□□□□ -0.19
SHANK1-201ENST00000293441 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.85□□□□□ -0.19
SHANK1-201ENST00000293441 LEPROTO15243 131 aa13.85□□□□□ -0.19
SHANK1-201ENST00000293441 TIMM21Q9BVV7 248 aa13.85□□□□□ -0.19
SHANK1-201ENST00000293441 LY96Q9Y6Y9 160 aa13.85□□□□□ -0.19
SHANK1-201ENST00000293441 FAM90A2PQ658T7 463 aa13.85□□□□□ -0.19
SHANK1-201ENST00000293441 TPSG1Q9NRR2 321 aa13.85□□□□□ -0.19
SHANK1-201ENST00000293441 ANAPC1Q9H1A4 1944 aa13.85□□□□□ -0.19
SHANK1-201ENST00000293441 F8WEM9 126 aa13.85□□□□□ -0.19
SHANK1-201ENST00000293441 PAX9P55771 341 aa13.85□□□□□ -0.19
SHANK1-201ENST00000293441 PRIMA1Q86XR5 153 aa13.85□□□□□ -0.19
SHANK1-201ENST00000293441 YPEL3P61236 119 aaPredicted RBP13.85□□□□□ -0.19
SHANK1-201ENST00000293441 GUSBP1Q15486 140 aa13.85□□□□□ -0.19
SHANK1-201ENST00000293441 TEX36Q5VZQ5 186 aa13.85□□□□□ -0.19
SHANK1-201ENST00000293441 ZNF407Q9C0G0 2248 aa13.85□□□□□ -0.19
SHANK1-201ENST00000293441 A8MWV9 139 aa13.85□□□□□ -0.19
SHANK1-201ENST00000293441 C8orf86Q6ZUL3 223 aa13.85□□□□□ -0.19
SHANK1-201ENST00000293441 HIST3H2BBQ8N257 126 aa13.84□□□□□ -0.19
SHANK1-201ENST00000293441 IGLV1-44P01699 117 aa13.84□□□□□ -0.19
SHANK1-201ENST00000293441 MYMXA0A1B0GTQ4 84 aa13.83□□□□□ -0.19
SHANK1-201ENST00000293441 GRNP28799 593 aaKnown RBP13.83□□□□□ -0.19
SHANK1-201ENST00000293441 MRAPQ8TCY5 172 aa13.83□□□□□ -0.19
SHANK1-201ENST00000293441 MCRIP2Q9BUT9 160 aaKnown RBP13.83□□□□□ -0.19
SHANK1-201ENST00000293441 ZNF561-AS1K7EIQ3 104 aa13.83□□□□□ -0.2
SHANK1-201ENST00000293441 PLXNA2O75051 1894 aa13.83□□□□□ -0.2
SHANK1-201ENST00000293441 UBE2CO00762 179 aa13.83□□□□□ -0.2
SHANK1-201ENST00000293441 DIAPH2-AS1Q14236 149 aa13.83□□□□□ -0.2
SHANK1-201ENST00000293441 TMEM256Q8N2U0 113 aa13.83□□□□□ -0.2
SHANK1-201ENST00000293441 TMEM213A2RRL7 107 aa13.83□□□□□ -0.2
SHANK1-201ENST00000293441 ZNF524Q96C55 264 aa13.83□□□□□ -0.2
SHANK1-201ENST00000293441 NAA38Q9BRA0 125 aaKnown RBP13.83□□□□□ -0.2
SHANK1-201ENST00000293441 NDUFA4O00483 81 aa13.82□□□□□ -0.2
SHANK1-201ENST00000293441 TNFRSF6BO95407 300 aa13.82□□□□□ -0.2
SHANK1-201ENST00000293441 BCL6BQ8N143 479 aaPredicted RBP13.82□□□□□ -0.2
SHANK1-201ENST00000293441 TRBV25-1A0A075B6N4 114 aa13.82□□□□□ -0.2
SHANK1-201ENST00000293441 K7EM74 188 aa13.82□□□□□ -0.2
SHANK1-201ENST00000293441 ETV2O00321 342 aaPredicted RBP13.82□□□□□ -0.2
SHANK1-201ENST00000293441 LY6G5BQ8NDX9 201 aa13.82□□□□□ -0.2
SHANK1-201ENST00000293441 LOC105371267A0A1B0GV96 52 aa13.82□□□□□ -0.2
SHANK1-201ENST00000293441 NDUFS7O75251 213 aa13.82□□□□□ -0.2
SHANK1-201ENST00000293441 MMP23AO75900 390 aa13.81□□□□□ -0.2
SHANK1-201ENST00000293441 NDUFAF3Q9BU61 184 aa13.81□□□□□ -0.2
SHANK1-201ENST00000293441 COLCA2A8K830 154 aa13.81□□□□□ -0.2
SHANK1-201ENST00000293441 PFN1P07737 140 aaKnown RBP13.81□□□□□ -0.2
SHANK1-201ENST00000293441 LYL1P12980 280 aa13.81□□□□□ -0.2
SHANK1-201ENST00000293441 SPAG8Q99932 426 aaPredicted RBP13.81□□□□□ -0.2
SHANK1-201ENST00000293441 IGHV1OR15-1A0A075B7D0 117 aa13.8□□□□□ -0.2
SHANK1-201ENST00000293441 IGHV3-38A0A0C4DH36 116 aa13.8□□□□□ -0.2
SHANK1-201ENST00000293441 CGB3P0DN86 165 aa13.8□□□□□ -0.2
SHANK1-201ENST00000293441 ZNF625Q96I27 306 aaPredicted RBP13.8□□□□□ -0.2
SHANK1-201ENST00000293441 A0A096LPF7 62 aa13.8□□□□□ -0.2
SHANK1-201ENST00000293441 HOXB4P17483 251 aaPredicted RBP13.8□□□□□ -0.2
SHANK1-201ENST00000293441 ARTNQ5T4W7 220 aa13.8□□□□□ -0.2
SHANK1-201ENST00000293441 CADP27708 2225 aa13.8□□□□□ -0.2
SHANK1-201ENST00000293441 USF3Q68DE3 2245 aa13.8□□□□□ -0.2
SHANK1-201ENST00000293441 TCF15Q12870 199 aa13.8□□□□□ -0.2
SHANK1-201ENST00000293441 TP53TG1Q9Y2A0 90 aa13.8□□□□□ -0.2
SHANK1-201ENST00000293441 A0A087X0K7 114 aa13.79□□□□□ -0.2
SHANK1-201ENST00000293441 RHODO00212 210 aa13.79□□□□□ -0.2
SHANK1-201ENST00000293441 GFRA4Q9GZZ7 299 aa13.79□□□□□ -0.2
SHANK1-201ENST00000293441 TRBV19A0A075B6N1 114 aa13.79□□□□□ -0.2
SHANK1-201ENST00000293441 WT1P19544 449 aaPredicted RBP13.79□□□□□ -0.2
SHANK1-201ENST00000293441 DEFB112Q30KQ8 113 aa13.79□□□□□ -0.2
SHANK1-201ENST00000293441 CDKN1BP46527 198 aa13.79□□□□□ -0.2
SHANK1-201ENST00000293441 ZMAT4Q9H898 229 aa13.79□□□□□ -0.2
SHANK1-201ENST00000293441 SYS1-DBNDD2H3BUS1 97 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms