RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 ADORA2A-AS1P86434 159 aa16.69■□□□□ 0.26
TRIM28-201ENST00000253024 AAMDCQ9H7C9 122 aa16.69■□□□□ 0.26
TRIM28-201ENST00000253024 CREBBPQ92793 2442 aa16.69■□□□□ 0.26
TRIM28-201ENST00000253024 RELQ04864 619 aaPredicted RBP16.68■□□□□ 0.26
TRIM28-201ENST00000253024 C21orf62Q9NYP8 219 aa16.68■□□□□ 0.26
TRIM28-201ENST00000253024 PTTG1IPP53801 180 aa16.68■□□□□ 0.26
TRIM28-201ENST00000253024 GAS8-AS1O95177 125 aa16.68■□□□□ 0.26
TRIM28-201ENST00000253024 LY6DQ14210 128 aa16.68■□□□□ 0.26
TRIM28-201ENST00000253024 ZNF492Q9P255 531 aa16.68■□□□□ 0.26
TRIM28-201ENST00000253024 G3V318 75 aa16.67■□□□□ 0.26
TRIM28-201ENST00000253024 K7EQM0 130 aa16.67■□□□□ 0.26
TRIM28-201ENST00000253024 SPRY2O43597 315 aa16.67■□□□□ 0.26
TRIM28-201ENST00000253024 ZNF80P51504 273 aaPredicted RBP16.67■□□□□ 0.26
TRIM28-201ENST00000253024 FA2HQ7L5A8 372 aa16.67■□□□□ 0.26
TRIM28-201ENST00000253024 AP5S1Q9NUS5 200 aa16.67■□□□□ 0.26
TRIM28-201ENST00000253024 ZFP30Q9Y2G7 519 aa16.67■□□□□ 0.26
TRIM28-201ENST00000253024 F8W735 103 aaPredicted RBP16.66■□□□□ 0.26
TRIM28-201ENST00000253024 SH2D1AO60880 128 aa16.66■□□□□ 0.26
TRIM28-201ENST00000253024 MFAP4P55083 255 aa16.66■□□□□ 0.26
TRIM28-201ENST00000253024 C18orf15Q96N68 181 aa16.66■□□□□ 0.26
TRIM28-201ENST00000253024 MAP1LC3CQ9BXW4 147 aa16.66■□□□□ 0.26
TRIM28-201ENST00000253024 CACNA1AO00555 2505 aa16.66■□□□□ 0.26
TRIM28-201ENST00000253024 CCL25O15444 150 aa16.66■□□□□ 0.26
TRIM28-201ENST00000253024 ORM1P02763 201 aa16.66■□□□□ 0.26
TRIM28-201ENST00000253024 PVRIGQ6DKI7 326 aa16.66■□□□□ 0.26
TRIM28-201ENST00000253024 UBTD1Q9HAC8 227 aa16.66■□□□□ 0.26
TRIM28-201ENST00000253024 TMEM189A5PLL7 270 aa16.65■□□□□ 0.26
TRIM28-201ENST00000253024 TWIST1Q15672 202 aa16.65■□□□□ 0.26
TRIM28-201ENST00000253024 Q6ZQT7 251 aa16.65■□□□□ 0.26
TRIM28-201ENST00000253024 USP9YO00507 2555 aaPredicted RBP16.65■□□□□ 0.26
TRIM28-201ENST00000253024 TMEM219Q86XT9 240 aa16.65■□□□□ 0.26
TRIM28-201ENST00000253024 PRAC2D3DTV9 90 aa16.65■□□□□ 0.26
TRIM28-201ENST00000253024 NEU4Q8WWR8 484 aaPredicted RBP16.65■□□□□ 0.26
TRIM28-201ENST00000253024 FLNCQ14315 2725 aa16.64■□□□□ 0.25
TRIM28-201ENST00000253024 NAA38Q9BRA0 125 aaKnown RBP16.64■□□□□ 0.25
TRIM28-201ENST00000253024 TMEM14CQ9P0S9 112 aa16.64■□□□□ 0.25
TRIM28-201ENST00000253024 RNF24Q9Y225 148 aa16.64■□□□□ 0.25
TRIM28-201ENST00000253024 C20orf202A1L168 122 aa16.64■□□□□ 0.25
TRIM28-201ENST00000253024 NPIPB6E9PJ23 425 aa16.64■□□□□ 0.25
TRIM28-201ENST00000253024 OVOL3O00110 214 aa16.64■□□□□ 0.25
TRIM28-201ENST00000253024 OR5AL1P0C617 328 aa16.64■□□□□ 0.25
TRIM28-201ENST00000253024 EGR2P11161 476 aaPredicted RBP16.64■□□□□ 0.25
TRIM28-201ENST00000253024 CEACAM3P40198 252 aa16.64■□□□□ 0.25
TRIM28-201ENST00000253024 NBL1P41271 181 aa16.64■□□□□ 0.25
TRIM28-201ENST00000253024 CSN1S1P47710 185 aa16.64■□□□□ 0.25
TRIM28-201ENST00000253024 RIGQ13278 110 aa16.64■□□□□ 0.25
TRIM28-201ENST00000253024 HSBP1L1C9JCN9 74 aa16.63■□□□□ 0.25
TRIM28-201ENST00000253024 EVI2AP22794 236 aa16.63■□□□□ 0.25
TRIM28-201ENST00000253024 IGKV3-7A0A075B6H7 116 aa16.63■□□□□ 0.25
TRIM28-201ENST00000253024 HAX1O00165 279 aa16.63■□□□□ 0.25
TRIM28-201ENST00000253024 UQCRFS1P47985 274 aa16.63■□□□□ 0.25
TRIM28-201ENST00000253024 VAMP3Q15836 100 aa16.63■□□□□ 0.25
TRIM28-201ENST00000253024 CBY1Q9Y3M2 126 aa16.63■□□□□ 0.25
TRIM28-201ENST00000253024 ZFYVE26Q68DK2 2539 aa16.62■□□□□ 0.25
TRIM28-201ENST00000253024 MRPS12O15235 138 aaKnown RBP16.62■□□□□ 0.25
TRIM28-201ENST00000253024 CT83Q5H943 113 aa16.62■□□□□ 0.25
TRIM28-201ENST00000253024 IGLV11-55A0A075B6I3 123 aa16.62■□□□□ 0.25
TRIM28-201ENST00000253024 CLEC3BP05452 202 aa16.62■□□□□ 0.25
TRIM28-201ENST00000253024 C15orf32Q32M92 178 aa16.62■□□□□ 0.25
TRIM28-201ENST00000253024 GATA1P15976 413 aaPredicted RBP16.61■□□□□ 0.25
TRIM28-201ENST00000253024 CLEC19AQ6UXS0 136 aa16.61■□□□□ 0.25
TRIM28-201ENST00000253024 TMEM191AQ9H0A3 160 aa16.61■□□□□ 0.25
TRIM28-201ENST00000253024 CTSGP08311 255 aa16.61■□□□□ 0.25
TRIM28-201ENST00000253024 DEFB1P60022 68 aa16.61■□□□□ 0.25
TRIM28-201ENST00000253024 LY6G5BQ8NDX9 201 aa16.61■□□□□ 0.25
TRIM28-201ENST00000253024 NDFIP1Q9BT67 221 aa16.61■□□□□ 0.25
TRIM28-201ENST00000253024 SORL1Q92673 2214 aa16.61■□□□□ 0.25
TRIM28-201ENST00000253024 GFRA4Q9GZZ7 299 aa16.6■□□□□ 0.25
TRIM28-201ENST00000253024 SMAD5-AS1Q9Y6J3 95 aa16.6■□□□□ 0.25
TRIM28-201ENST00000253024 PRTN3P24158 256 aa16.6■□□□□ 0.25
TRIM28-201ENST00000253024 OR11H6Q8NGC7 330 aa16.6■□□□□ 0.25
TRIM28-201ENST00000253024 CHCHD1Q96BP2 118 aaKnown RBP16.6■□□□□ 0.25
TRIM28-201ENST00000253024 PRELID3AQ96N28 172 aa16.6■□□□□ 0.25
TRIM28-201ENST00000253024 ZNF562Q6V9R5 426 aa16.59■□□□□ 0.25
TRIM28-201ENST00000253024 DEFB104AQ8WTQ1 72 aa16.59■□□□□ 0.25
TRIM28-201ENST00000253024 SIGLEC8Q9NYZ4 499 aa16.59■□□□□ 0.25
TRIM28-201ENST00000253024 IGHV7-81A0A0B4J1V7 117 aa16.59■□□□□ 0.25
TRIM28-201ENST00000253024 WI2-2373I1.2A0A1W2PRP0 233 aa16.59■□□□□ 0.25
TRIM28-201ENST00000253024 SLC25A34Q6PIV7 304 aa16.59■□□□□ 0.25
TRIM28-201ENST00000253024 SMIM12Q96EX1 92 aa16.59■□□□□ 0.25
TRIM28-201ENST00000253024 NHLH1Q02575 133 aa16.59■□□□□ 0.25
TRIM28-201ENST00000253024 PRSS57Q6UWY2 283 aa16.59■□□□□ 0.25
TRIM28-201ENST00000253024 MYO18BQ8IUG5 2567 aa16.58■□□□□ 0.25
TRIM28-201ENST00000253024 ATP6V0E1O15342 81 aa16.58■□□□□ 0.24
TRIM28-201ENST00000253024 TM4SF20Q53R12 229 aa16.58■□□□□ 0.24
TRIM28-201ENST00000253024 FAM208BQ5VWN6 2430 aa16.58■□□□□ 0.24
TRIM28-201ENST00000253024 HOXB4P17483 251 aaPredicted RBP16.58■□□□□ 0.24
TRIM28-201ENST00000253024 CKS2P33552 79 aa16.58■□□□□ 0.24
TRIM28-201ENST00000253024 CACNG7P62955 275 aa16.58■□□□□ 0.24
TRIM28-201ENST00000253024 SOX21Q9Y651 276 aaPredicted RBP16.58■□□□□ 0.24
TRIM28-201ENST00000253024 NPYP01303 97 aa16.57■□□□□ 0.24
TRIM28-201ENST00000253024 RHOGP84095 191 aa16.57■□□□□ 0.24
TRIM28-201ENST00000253024 PRR25Q96S07 402 aa16.57■□□□□ 0.24
TRIM28-201ENST00000253024 ZANQ9Y493 2812 aa16.57■□□□□ 0.24
TRIM28-201ENST00000253024 NDUFA3O95167 84 aa16.57■□□□□ 0.24
TRIM28-201ENST00000253024 MRPL51Q4U2R6 128 aaKnown RBP16.57■□□□□ 0.24
TRIM28-201ENST00000253024 RABAC1Q9UI14 185 aa16.57■□□□□ 0.24
TRIM28-201ENST00000253024 FAM162BQ5T6X4 162 aa16.56■□□□□ 0.24
TRIM28-201ENST00000253024 COX11Q9Y6N1 276 aa16.56■□□□□ 0.24
TRIM28-201ENST00000253024 IL17RELQ6ZVW7 336 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms