RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 SGK494Q96LW2 274 aa13.87□□□□□ -0.19
VIM-201ENST00000224237 IMMP2LQ96T52 175 aa13.87□□□□□ -0.19
VIM-201ENST00000224237 TRBV6-1A0A0K0K1D8 114 aa13.86□□□□□ -0.19
VIM-201ENST00000224237 INAFM1C9JVW0 142 aa13.86□□□□□ -0.19
VIM-201ENST00000224237 TRGC2P03986 189 aa13.86□□□□□ -0.19
VIM-201ENST00000224237 KCNIP4Q6PIL6 250 aa13.86□□□□□ -0.19
VIM-201ENST00000224237 IGHV7-4-1A0A0J9YVY3 117 aa13.85□□□□□ -0.19
VIM-201ENST00000224237 Q86TA4 180 aa13.85□□□□□ -0.19
VIM-201ENST00000224237 SRD5A3Q9H8P0 318 aa13.85□□□□□ -0.19
VIM-201ENST00000224237 OSTCQ9NRP0 149 aa13.85□□□□□ -0.19
VIM-201ENST00000224237 UFC1Q9Y3C8 167 aa13.85□□□□□ -0.19
VIM-201ENST00000224237 TRAV8-1A0A0A6YYK1 113 aa13.84□□□□□ -0.19
VIM-201ENST00000224237 IGLV2-11P01706 119 aa13.84□□□□□ -0.19
VIM-201ENST00000224237 FOSL1P15407 271 aa13.84□□□□□ -0.19
VIM-201ENST00000224237 PSG3Q16557 428 aa13.84□□□□□ -0.19
VIM-201ENST00000224237 IBA57Q5T440 356 aaKnown RBP13.84□□□□□ -0.19
VIM-201ENST00000224237 BTF3L4Q96K17 158 aa13.84□□□□□ -0.19
VIM-201ENST00000224237 MLST8Q9BVC4 326 aa13.84□□□□□ -0.19
VIM-201ENST00000224237 HOXA5P20719 270 aa13.84□□□□□ -0.19
VIM-201ENST00000224237 CDX1P47902 265 aaPredicted RBP13.84□□□□□ -0.19
VIM-201ENST00000224237 TM4SF20Q53R12 229 aa13.84□□□□□ -0.19
VIM-201ENST00000224237 JMJD8Q96S16 334 aa13.84□□□□□ -0.19
VIM-201ENST00000224237 RNASE7Q9H1E1 156 aaKnown RBP13.84□□□□□ -0.19
VIM-201ENST00000224237 IGHV4OR15-8A0A075B7B6 117 aa13.83□□□□□ -0.2
VIM-201ENST00000224237 A0A087WW49 117 aa13.83□□□□□ -0.2
VIM-201ENST00000224237 HIST1H2BKO60814 126 aa13.83□□□□□ -0.2
VIM-201ENST00000224237 HIST1H2BJP06899 126 aa13.83□□□□□ -0.2
VIM-201ENST00000224237 HIST1H2BOP23527 126 aa13.83□□□□□ -0.2
VIM-201ENST00000224237 HIST1H2BBP33778 126 aa13.83□□□□□ -0.2
VIM-201ENST00000224237 HIST1H2BDP58876 126 aa13.83□□□□□ -0.2
VIM-201ENST00000224237 HIST1H2BCP62807 126 aa13.83□□□□□ -0.2
VIM-201ENST00000224237 HIST2H2BEQ16778 126 aa13.83□□□□□ -0.2
VIM-201ENST00000224237 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.83□□□□□ -0.2
VIM-201ENST00000224237 HIST2H2BDQ6DRA6 164 aa13.83□□□□□ -0.2
VIM-201ENST00000224237 C8orf86Q6ZUL3 223 aa13.83□□□□□ -0.2
VIM-201ENST00000224237 FAM231DQ6ZW35 169 aa13.83□□□□□ -0.2
VIM-201ENST00000224237 PRNTQ86SH4 94 aa13.83□□□□□ -0.2
VIM-201ENST00000224237 HIST1H2BHQ93079 126 aa13.83□□□□□ -0.2
VIM-201ENST00000224237 HIST1H2BNQ99877 126 aa13.83□□□□□ -0.2
VIM-201ENST00000224237 HIST1H2BMQ99879 126 aa13.83□□□□□ -0.2
VIM-201ENST00000224237 RHPN1-AS1Q9BWJ2 59 aa13.83□□□□□ -0.2
VIM-201ENST00000224237 V9GYV3 84 aa13.83□□□□□ -0.2
VIM-201ENST00000224237 FN1P02751 2386 aaKnown RBP13.83□□□□□ -0.2
VIM-201ENST00000224237 CHEK1O14757 476 aa13.82□□□□□ -0.2
VIM-201ENST00000224237 BMI1P35226 326 aa13.82□□□□□ -0.2
VIM-201ENST00000224237 FOXL1Q12952 345 aa13.82□□□□□ -0.2
VIM-201ENST00000224237 REC114Q7Z4M0 266 aa13.82□□□□□ -0.2
VIM-201ENST00000224237 TMEM183AQ8IXX5 376 aa13.82□□□□□ -0.2
VIM-201ENST00000224237 C16orf95Q9H693 158 aa13.82□□□□□ -0.2
VIM-201ENST00000224237 SMPXQ9UHP9 88 aa13.82□□□□□ -0.2
VIM-201ENST00000224237 ZFP30Q9Y2G7 519 aa13.82□□□□□ -0.2
VIM-201ENST00000224237 SETD2Q9BYW2 2564 aaPredicted RBP13.82□□□□□ -0.2
VIM-201ENST00000224237 FBLL1A6NHQ2 334 aaKnown RBP13.82□□□□□ -0.2
VIM-201ENST00000224237 A8MWP6 167 aa13.82□□□□□ -0.2
VIM-201ENST00000224237 C4orf3Q8WVX3 66 aa13.82□□□□□ -0.2
VIM-201ENST00000224237 C12orf57Q99622 126 aa13.82□□□□□ -0.2
VIM-201ENST00000224237 CLEC5AQ9NY25 188 aa13.82□□□□□ -0.2
VIM-201ENST00000224237 PSG8Q9UQ74 426 aa13.82□□□□□ -0.2
VIM-201ENST00000224237 A0A1W2PPQ1 181 aa13.81□□□□□ -0.2
VIM-201ENST00000224237 LGALS9O00182 355 aa13.81□□□□□ -0.2
VIM-201ENST00000224237 PHOX2AO14813 284 aa13.81□□□□□ -0.2
VIM-201ENST00000224237 HOXD3P31249 432 aaPredicted RBP13.81□□□□□ -0.2
VIM-201ENST00000224237 NDUFA6P56556 154 aa13.81□□□□□ -0.2
VIM-201ENST00000224237 TCTEX1D4Q5JR98 221 aa13.81□□□□□ -0.2
VIM-201ENST00000224237 IGFL4Q6B9Z1 124 aa13.81□□□□□ -0.2
VIM-201ENST00000224237 LCN12Q6JVE5 192 aa13.81□□□□□ -0.2
VIM-201ENST00000224237 WIPF2Q8TF74 440 aaPredicted RBP13.81□□□□□ -0.2
VIM-201ENST00000224237 MRPL53Q96EL3 112 aaKnown RBP13.81□□□□□ -0.2
VIM-201ENST00000224237 IL36BQ9NZH7 164 aa13.81□□□□□ -0.2
VIM-201ENST00000224237 TYMSP04818 313 aa13.8□□□□□ -0.2
VIM-201ENST00000224237 TRGC1P0CF51 173 aa13.8□□□□□ -0.2
VIM-201ENST00000224237 HLA-DMBP28068 263 aa13.8□□□□□ -0.2
VIM-201ENST00000224237 FAM3BP58499 235 aaPredicted RBP13.8□□□□□ -0.2
VIM-201ENST00000224237 KHDC1LQ5JSQ8 128 aa13.8□□□□□ -0.2
VIM-201ENST00000224237 PRR27Q6MZM9 219 aa13.8□□□□□ -0.2
VIM-201ENST00000224237 WFDC12Q8WWY7 111 aa13.8□□□□□ -0.2
VIM-201ENST00000224237 FRZBQ92765 325 aa13.8□□□□□ -0.2
VIM-201ENST00000224237 TMEM213A2RRL7 107 aa13.8□□□□□ -0.2
VIM-201ENST00000224237 C16orf92Q96LL3 132 aa13.8□□□□□ -0.2
VIM-201ENST00000224237 IGKV2-40A0A087WW87 121 aaPredicted RBP13.79□□□□□ -0.2
VIM-201ENST00000224237 TRAV8-2A0A0B4J237 113 aa13.79□□□□□ -0.2
VIM-201ENST00000224237 ZNF705GA8MUZ8 300 aaPredicted RBP13.79□□□□□ -0.2
VIM-201ENST00000224237 IGKV2D-40P01614 121 aaPredicted RBP13.79□□□□□ -0.2
VIM-201ENST00000224237 SYNJ2BPP57105 145 aa13.79□□□□□ -0.2
VIM-201ENST00000224237 C18orf65Q6ZTR6 163 aa13.79□□□□□ -0.2
VIM-201ENST00000224237 RNF182Q8N6D2 247 aa13.79□□□□□ -0.2
VIM-201ENST00000224237 ZNF492Q9P255 531 aa13.79□□□□□ -0.2
VIM-201ENST00000224237 F8P00451 2351 aa13.79□□□□□ -0.2
VIM-201ENST00000224237 ZNF705FA8MVS1 300 aaPredicted RBP13.78□□□□□ -0.2
VIM-201ENST00000224237 PRB4P10163 310 aaPredicted RBP13.78□□□□□ -0.2
VIM-201ENST00000224237 SRSF2Q01130 221 aaKnown RBP13.78□□□□□ -0.2
VIM-201ENST00000224237 NUDT10Q8NFP7 164 aa13.78□□□□□ -0.2
VIM-201ENST00000224237 LINC01006Q8NI28 216 aa13.78□□□□□ -0.2
VIM-201ENST00000224237 NUDT11Q96G61 164 aa13.78□□□□□ -0.2
VIM-201ENST00000224237 NRN1Q9NPD7 142 aa13.78□□□□□ -0.2
VIM-201ENST00000224237 TRAV9-1A0A075B6T8 112 aa13.78□□□□□ -0.2
VIM-201ENST00000224237 RBAKDNA6NC62 111 aa13.78□□□□□ -0.2
VIM-201ENST00000224237 CYSRT1A8MQ03 144 aa13.78□□□□□ -0.2
VIM-201ENST00000224237 LINC01619G3V211 115 aa13.78□□□□□ -0.2
VIM-201ENST00000224237 SMIM6P0DI80 62 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 82.9 ms