RNA–Protein interactions for RNA: ENST00000568139.5

CLK3-221, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 918 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-221ENST00000568139 C20orf144Q9BQM9 153 aa12.17□□□□□ -0.46
CLK3-221ENST00000568139 STRAPQ9Y3F4 350 aaKnown RBP12.17□□□□□ -0.46
CLK3-221ENST00000568139 H3BNG1 76 aa12.16□□□□□ -0.46
CLK3-221ENST00000568139 H3BP45 60 aa12.16□□□□□ -0.46
CLK3-221ENST00000568139 VAMP1P23763 118 aa12.16□□□□□ -0.46
CLK3-221ENST00000568139 DYNC2LI1Q8TCX1 351 aa12.16□□□□□ -0.46
CLK3-221ENST00000568139 RPUSD4Q96CM3 377 aaKnown RBP12.16□□□□□ -0.46
CLK3-221ENST00000568139 CCDC59Q9P031 241 aaKnown RBP12.16□□□□□ -0.46
CLK3-221ENST00000568139 MRPS16Q9Y3D3 137 aaKnown RBP12.16□□□□□ -0.46
CLK3-221ENST00000568139 A0A0J9YY99 117 aa12.15□□□□□ -0.46
CLK3-221ENST00000568139 MRPS12O15235 138 aaKnown RBP12.15□□□□□ -0.46
CLK3-221ENST00000568139 ADAP1O75689 374 aa12.15□□□□□ -0.46
CLK3-221ENST00000568139 SFT2D2O95562 160 aa12.15□□□□□ -0.46
CLK3-221ENST00000568139 OR5G3P0C626 314 aa12.15□□□□□ -0.46
CLK3-221ENST00000568139 LINC00869P0C866 280 aa12.15□□□□□ -0.46
CLK3-221ENST00000568139 PRB4P10163 310 aaPredicted RBP12.15□□□□□ -0.46
CLK3-221ENST00000568139 HOXA5P20719 270 aa12.15□□□□□ -0.46
CLK3-221ENST00000568139 SELENOTP62341 195 aa12.15□□□□□ -0.46
CLK3-221ENST00000568139 LRRC20Q8TCA0 184 aa12.15□□□□□ -0.46
CLK3-221ENST00000568139 SMCO3A2RU48 225 aa12.14□□□□□ -0.47
CLK3-221ENST00000568139 PMS2P5A8MQ11 134 aa12.14□□□□□ -0.47
CLK3-221ENST00000568139 HOXB5P09067 269 aa12.14□□□□□ -0.47
CLK3-221ENST00000568139 FAUP35544 74 aaKnown RBP12.14□□□□□ -0.47
CLK3-221ENST00000568139 KIR3DS1Q14943 382 aa12.14□□□□□ -0.47
CLK3-221ENST00000568139 PATE2Q6UY27 113 aa12.14□□□□□ -0.47
CLK3-221ENST00000568139 S100A7AQ86SG5 101 aa12.14□□□□□ -0.47
CLK3-221ENST00000568139 ZNF586Q9NXT0 402 aa12.14□□□□□ -0.47
CLK3-221ENST00000568139 FABP12A6NFH5 140 aa12.13□□□□□ -0.47
CLK3-221ENST00000568139 EPM2AB3EWF7 344 aa12.13□□□□□ -0.47
CLK3-221ENST00000568139 CXCL2P19875 107 aa12.13□□□□□ -0.47
CLK3-221ENST00000568139 DLK1P80370 383 aa12.13□□□□□ -0.47
CLK3-221ENST00000568139 ID3Q02535 119 aa12.13□□□□□ -0.47
CLK3-221ENST00000568139 CCDC28AQ8IWP9 274 aa12.13□□□□□ -0.47
CLK3-221ENST00000568139 ZNF331Q9NQX6 463 aaPredicted RBP12.13□□□□□ -0.47
CLK3-221ENST00000568139 HERC1Q15751 4861 aa12.12□□□□□ -0.47
CLK3-221ENST00000568139 GAGE12BA1L429 117 aa12.12□□□□□ -0.47
CLK3-221ENST00000568139 GAGE7O76087 117 aa12.12□□□□□ -0.47
CLK3-221ENST00000568139 RLN2P04090 185 aa12.12□□□□□ -0.47
CLK3-221ENST00000568139 GAGE12FP0CL80 117 aa12.12□□□□□ -0.47
CLK3-221ENST00000568139 GAGE12GP0CL81 117 aa12.12□□□□□ -0.47
CLK3-221ENST00000568139 GAGE12IP0CL82 117 aa12.12□□□□□ -0.47
CLK3-221ENST00000568139 TNFSF8P32971 234 aa12.12□□□□□ -0.47
CLK3-221ENST00000568139 PPP1R1AQ13522 171 aa12.12□□□□□ -0.47
CLK3-221ENST00000568139 Q6ZRN7 208 aaPredicted RBP12.12□□□□□ -0.47
CLK3-221ENST00000568139 SLC25A21Q9BQT8 299 aaPredicted RBP12.12□□□□□ -0.47
CLK3-221ENST00000568139 PSENENQ9NZ42 101 aa12.12□□□□□ -0.47
CLK3-221ENST00000568139 RNF24Q9Y225 148 aa12.12□□□□□ -0.47
CLK3-221ENST00000568139 K7EPK0 472 aa12.11□□□□□ -0.47
CLK3-221ENST00000568139 ANXA7P20073 488 aaKnown RBP12.11□□□□□ -0.47
CLK3-221ENST00000568139 POLR2GP62487 172 aaKnown RBP eCLIP12.11□□□□□ -0.47
CLK3-221ENST00000568139 GFI1BQ5VTD9 330 aa12.11□□□□□ -0.47
CLK3-221ENST00000568139 LCN15Q6UWW0 184 aa12.11□□□□□ -0.47
CLK3-221ENST00000568139 TRIM63Q969Q1 353 aa12.11□□□□□ -0.47
CLK3-221ENST00000568139 SLC50A1Q9BRV3 221 aa12.11□□□□□ -0.47
CLK3-221ENST00000568139 PARD6GQ9BYG4 376 aaPredicted RBP12.11□□□□□ -0.47
CLK3-221ENST00000568139 MRPS26Q9BYN8 205 aaKnown RBP12.11□□□□□ -0.47
CLK3-221ENST00000568139 ARL6Q9H0F7 186 aa12.11□□□□□ -0.47
CLK3-221ENST00000568139 ARV1Q9H2C2 271 aa12.11□□□□□ -0.47
CLK3-221ENST00000568139 NPVFQ9HCQ7 196 aa12.11□□□□□ -0.47
CLK3-221ENST00000568139 SNURFLB1AK76 121 aa12.1□□□□□ -0.47
CLK3-221ENST00000568139 FNDC10F2Z333 226 aa12.1□□□□□ -0.47
CLK3-221ENST00000568139 LINC00315P59091 139 aa12.1□□□□□ -0.47
CLK3-221ENST00000568139 AP3S2P59780 193 aa12.1□□□□□ -0.47
CLK3-221ENST00000568139 C4orf46Q504U0 113 aa12.1□□□□□ -0.47
CLK3-221ENST00000568139 TOMM5Q8N4H5 51 aa12.1□□□□□ -0.47
CLK3-221ENST00000568139 RAB2BQ8WUD1 216 aa12.1□□□□□ -0.47
CLK3-221ENST00000568139 SLIRPQ9GZT3 109 aaKnown RBP12.1□□□□□ -0.47
CLK3-221ENST00000568139 PGPEP1Q9NXJ5 209 aa12.1□□□□□ -0.47
CLK3-221ENST00000568139 A0A096LPF7 62 aa12.09□□□□□ -0.47
CLK3-221ENST00000568139 CCNKO75909 580 aa12.09□□□□□ -0.47
CLK3-221ENST00000568139 RRAS2P62070 204 aaPredicted RBP12.09□□□□□ -0.47
CLK3-221ENST00000568139 DAZ2Q13117 558 aaKnown RBP12.09□□□□□ -0.47
CLK3-221ENST00000568139 PXDC1Q5TGL8 231 aa12.09□□□□□ -0.47
CLK3-221ENST00000568139 LYPD1Q8N2G4 141 aa12.09□□□□□ -0.47
CLK3-221ENST00000568139 VSIG2Q96IQ7 327 aa12.09□□□□□ -0.47
CLK3-221ENST00000568139 SMIM8Q96KF7 97 aa12.09□□□□□ -0.47
CLK3-221ENST00000568139 BCL7BQ9BQE9 202 aa12.09□□□□□ -0.47
CLK3-221ENST00000568139 TMPRSS5Q9H3S3 457 aa12.09□□□□□ -0.47
CLK3-221ENST00000568139 PRAC2D3DTV9 90 aa12.08□□□□□ -0.48
CLK3-221ENST00000568139 INAFM2P0DMQ5 153 aa12.08□□□□□ -0.48
CLK3-221ENST00000568139 TMBIM6P55061 237 aa12.08□□□□□ -0.48
CLK3-221ENST00000568139 TEPPQ6URK8 271 aa12.08□□□□□ -0.48
CLK3-221ENST00000568139 TMEM14EPQ6UXP3 125 aa12.08□□□□□ -0.48
CLK3-221ENST00000568139 CCDC190Q86UF4 302 aa12.08□□□□□ -0.48
CLK3-221ENST00000568139 ZBTB8BQ8NAP8 495 aaPredicted RBP12.08□□□□□ -0.48
CLK3-221ENST00000568139 DEDD2Q8WXF8 326 aa12.08□□□□□ -0.48
CLK3-221ENST00000568139 DMBT1Q9UGM3 2413 aaPredicted RBP12.08□□□□□ -0.48
CLK3-221ENST00000568139 SNRPCP09234 159 aaKnown RBP12.07□□□□□ -0.48
CLK3-221ENST00000568139 XGP55808 180 aa12.07□□□□□ -0.48
CLK3-221ENST00000568139 SLC38A11Q08AI6 406 aa12.07□□□□□ -0.48
CLK3-221ENST00000568139 Q6ZTI0 123 aa12.07□□□□□ -0.48
CLK3-221ENST00000568139 LINC00305Q7Z4B0 112 aa12.07□□□□□ -0.48
CLK3-221ENST00000568139 BPIFA4PQ86YQ2 179 aa12.07□□□□□ -0.48
CLK3-221ENST00000568139 C18orf15Q96N68 181 aa12.07□□□□□ -0.48
CLK3-221ENST00000568139 ODF3Q96PU9 254 aa12.07□□□□□ -0.48
CLK3-221ENST00000568139 PYGO2Q9BRQ0 406 aa12.07□□□□□ -0.48
CLK3-221ENST00000568139 SLC17A3O00476 420 aa12.06□□□□□ -0.48
CLK3-221ENST00000568139 SSSCA1O60232 199 aa12.06□□□□□ -0.48
CLK3-221ENST00000568139 METTL15P1P0C7V9 234 aa12.06□□□□□ -0.48
CLK3-221ENST00000568139 UBE2MP61081 183 aaKnown RBP12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 102.9 ms