RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 TAX1BP3O14907 124 aa10.47□□□□□ -0.73
CLN3-210ENST00000563874 PLGLAQ15195 96 aa10.47□□□□□ -0.73
CLN3-210ENST00000563874 A0A1B0GUT8 65 aa10.47□□□□□ -0.73
CLN3-210ENST00000563874 IGFL3Q6UXB1 125 aa10.47□□□□□ -0.73
CLN3-210ENST00000563874 NEU4Q8WWR8 484 aaPredicted RBP10.47□□□□□ -0.73
CLN3-210ENST00000563874 RNASE6Q93091 150 aaKnown RBP10.47□□□□□ -0.73
CLN3-210ENST00000563874 TMSB15BA0A087X1C1 80 aa10.47□□□□□ -0.73
CLN3-210ENST00000563874 IGHV1-3A0A0C4DH29 117 aa10.47□□□□□ -0.73
CLN3-210ENST00000563874 M0R3E3 92 aa10.47□□□□□ -0.73
CLN3-210ENST00000563874 OVOL3O00110 214 aa10.47□□□□□ -0.73
CLN3-210ENST00000563874 HAX1O00165 279 aa10.47□□□□□ -0.73
CLN3-210ENST00000563874 KLK10O43240 276 aa10.47□□□□□ -0.73
CLN3-210ENST00000563874 OR5AL1P0C617 328 aa10.47□□□□□ -0.73
CLN3-210ENST00000563874 FAM106CPP0CH98 169 aa10.47□□□□□ -0.73
CLN3-210ENST00000563874 FAM106AQ4KMX7 169 aa10.47□□□□□ -0.73
CLN3-210ENST00000563874 C8orf31Q8N9H6 132 aa10.47□□□□□ -0.73
CLN3-210ENST00000563874 NCR2O95944 276 aa10.46□□□□□ -0.73
CLN3-210ENST00000563874 IGKV1-17P01599 117 aa10.46□□□□□ -0.73
CLN3-210ENST00000563874 PVRIGQ6DKI7 326 aa10.46□□□□□ -0.73
CLN3-210ENST00000563874 SCRT2Q9NQ03 307 aa10.46□□□□□ -0.73
CLN3-210ENST00000563874 C1RLQ9NZP8 487 aa10.46□□□□□ -0.73
CLN3-210ENST00000563874 DCHS2Q6V1P9 2916 aa10.46□□□□□ -0.74
CLN3-210ENST00000563874 K7EP13 123 aa10.46□□□□□ -0.74
CLN3-210ENST00000563874 CRYGBP07316 175 aa10.46□□□□□ -0.74
CLN3-210ENST00000563874 FXYD7P58549 80 aa10.46□□□□□ -0.74
CLN3-210ENST00000563874 PLP1P60201 277 aa10.46□□□□□ -0.74
CLN3-210ENST00000563874 AP5S1Q9NUS5 200 aa10.46□□□□□ -0.74
CLN3-210ENST00000563874 MUC6Q6W4X9 2439 aa10.45□□□□□ -0.74
CLN3-210ENST00000563874 LOC389332A0A1B0GUA5 103 aa10.45□□□□□ -0.74
CLN3-210ENST00000563874 BCL6BQ8N143 479 aaPredicted RBP10.45□□□□□ -0.74
CLN3-210ENST00000563874 FAM231BA6NCW3 169 aa10.45□□□□□ -0.74
CLN3-210ENST00000563874 CNIH1O95406 144 aa10.45□□□□□ -0.74
CLN3-210ENST00000563874 APOBEC3AP31941 199 aaPredicted RBP10.45□□□□□ -0.74
CLN3-210ENST00000563874 KLF17Q5JT82 389 aaPredicted RBP10.45□□□□□ -0.74
CLN3-210ENST00000563874 PET117Q6UWS5 81 aa10.45□□□□□ -0.74
CLN3-210ENST00000563874 PRSS3P2Q8NHM4 247 aa10.45□□□□□ -0.74
CLN3-210ENST00000563874 ZNF479Q96JC4 524 aa10.45□□□□□ -0.74
CLN3-210ENST00000563874 NGBQ9NPG2 151 aa10.45□□□□□ -0.74
CLN3-210ENST00000563874 HSPB8Q9UJY1 196 aa10.45□□□□□ -0.74
CLN3-210ENST00000563874 ZNF292O60281 2723 aa10.45□□□□□ -0.74
CLN3-210ENST00000563874 I3L2K1 104 aa10.44□□□□□ -0.74
CLN3-210ENST00000563874 HLA-DRB1P01911 266 aa10.44□□□□□ -0.74
CLN3-210ENST00000563874 CRIP1P50238 77 aa10.44□□□□□ -0.74
CLN3-210ENST00000563874 ARF6P62330 175 aa10.44□□□□□ -0.74
CLN3-210ENST00000563874 LOXL1Q08397 574 aaPredicted RBP10.44□□□□□ -0.74
CLN3-210ENST00000563874 AMMECR1LQ6DCA0 310 aa10.44□□□□□ -0.74
CLN3-210ENST00000563874 ASCL5Q7RTU5 278 aa10.44□□□□□ -0.74
CLN3-210ENST00000563874 SELENOKQ9Y6D0 94 aa10.44□□□□□ -0.74
CLN3-210ENST00000563874 WNK2Q9Y3S1 2297 aa10.44□□□□□ -0.74
CLN3-210ENST00000563874 TRBV19A0A075B6N1 114 aa10.44□□□□□ -0.74
CLN3-210ENST00000563874 C8orf49Q96NF6 230 aa10.44□□□□□ -0.74
CLN3-210ENST00000563874 PSG8Q9UQ74 426 aa10.44□□□□□ -0.74
CLN3-210ENST00000563874 PIEZO1Q92508 2521 aa10.44□□□□□ -0.74
CLN3-210ENST00000563874 BUB1B-PAK6H3BSN5 160 aa10.44□□□□□ -0.74
CLN3-210ENST00000563874 IGLV1-47P01700 117 aa10.44□□□□□ -0.74
CLN3-210ENST00000563874 FA2HQ7L5A8 372 aa10.44□□□□□ -0.74
CLN3-210ENST00000563874 OR8A1Q8NGG7 326 aa10.44□□□□□ -0.74
CLN3-210ENST00000563874 RPEQ96AT9 228 aa10.44□□□□□ -0.74
CLN3-210ENST00000563874 NBASA2RRP1 2371 aa10.44□□□□□ -0.74
CLN3-210ENST00000563874 ARHGAP32A7KAX9 2087 aa10.43□□□□□ -0.74
CLN3-210ENST00000563874 E7EQL1 145 aa10.43□□□□□ -0.74
CLN3-210ENST00000563874 PRRG2O14669 202 aa10.43□□□□□ -0.74
CLN3-210ENST00000563874 IL4P05112 153 aa10.43□□□□□ -0.74
CLN3-210ENST00000563874 IFI27P40305 119 aaPredicted RBP10.43□□□□□ -0.74
CLN3-210ENST00000563874 BPIFA4PQ86YQ2 179 aa10.43□□□□□ -0.74
CLN3-210ENST00000563874 DEFB125Q8N687 156 aa10.43□□□□□ -0.74
CLN3-210ENST00000563874 SPTA1P02549 2419 aa10.43□□□□□ -0.74
CLN3-210ENST00000563874 TRAV30A0A087WSZ9 112 aa10.43□□□□□ -0.74
CLN3-210ENST00000563874 FCGR2BP31994 310 aaPredicted RBP10.43□□□□□ -0.74
CLN3-210ENST00000563874 RIGQ13278 110 aa10.43□□□□□ -0.74
CLN3-210ENST00000563874 C12orf54Q6X4T0 127 aa10.43□□□□□ -0.74
CLN3-210ENST00000563874 SIGLEC15Q6ZMC9 328 aa10.43□□□□□ -0.74
CLN3-210ENST00000563874 ZNF747Q9BV97 191 aa10.43□□□□□ -0.74
CLN3-210ENST00000563874 TMEM14CQ9P0S9 112 aa10.43□□□□□ -0.74
CLN3-210ENST00000563874 CLEC3BP05452 202 aa10.42□□□□□ -0.74
CLN3-210ENST00000563874 HOXB4P17483 251 aaPredicted RBP10.42□□□□□ -0.74
CLN3-210ENST00000563874 RBPJQ06330 500 aa10.42□□□□□ -0.74
CLN3-210ENST00000563874 LDLRAD2Q5SZI1 272 aa10.42□□□□□ -0.74
CLN3-210ENST00000563874 LINC01545Q5VT33 79 aa10.42□□□□□ -0.74
CLN3-210ENST00000563874 SCNM1Q9BWG6 230 aa10.42□□□□□ -0.74
CLN3-210ENST00000563874 KAAG1Q9UBP8 84 aa10.42□□□□□ -0.74
CLN3-210ENST00000563874 TLN1Q9Y490 2541 aaKnown RBP10.42□□□□□ -0.74
CLN3-210ENST00000563874 TMEM213A2RRL7 107 aa10.42□□□□□ -0.74
CLN3-210ENST00000563874 K7EIM0 57 aa10.42□□□□□ -0.74
CLN3-210ENST00000563874 SHANK2-AS3Q9BTD1 123 aa10.42□□□□□ -0.74
CLN3-210ENST00000563874 RALYQ9UKM9 306 aaKnown RBP10.42□□□□□ -0.74
CLN3-210ENST00000563874 CACNA1BQ00975 2339 aa10.42□□□□□ -0.74
CLN3-210ENST00000563874 MED13LQ71F56 2210 aa10.42□□□□□ -0.74
CLN3-210ENST00000563874 GPR183P32249 361 aa10.42□□□□□ -0.74
CLN3-210ENST00000563874 D6R8Y8 96 aa10.41□□□□□ -0.74
CLN3-210ENST00000563874 PSG3Q16557 428 aa10.41□□□□□ -0.74
CLN3-210ENST00000563874 SHISA9B4DS77 424 aa10.41□□□□□ -0.74
CLN3-210ENST00000563874 UQCRFS1P47985 274 aa10.41□□□□□ -0.74
CLN3-210ENST00000563874 PSG9Q00887 426 aa10.41□□□□□ -0.74
CLN3-210ENST00000563874 AMN1Q8IY45 258 aa10.41□□□□□ -0.74
CLN3-210ENST00000563874 ZNF491Q8N8L2 437 aa10.41□□□□□ -0.74
CLN3-210ENST00000563874 OR10AG1Q8NH19 301 aa10.41□□□□□ -0.74
CLN3-210ENST00000563874 RNF125Q96EQ8 232 aa10.41□□□□□ -0.74
CLN3-210ENST00000563874 CEP295Q9C0D2 2601 aa10.4□□□□□ -0.74
CLN3-210ENST00000563874 TRAV8-6A0A0B4J262 113 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 86.6 ms