RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 OTORQ9NRC9 128 aa6.9□□□□□ -1.3
VPS39-207ENST00000563692 EPDR1Q9UM22 224 aa6.9□□□□□ -1.3
VPS39-207ENST00000563692 TRBV19A0A075B6N1 114 aa6.89□□□□□ -1.31
VPS39-207ENST00000563692 K7EQM0 130 aa6.89□□□□□ -1.31
VPS39-207ENST00000563692 NDUFA4O00483 81 aa6.89□□□□□ -1.31
VPS39-207ENST00000563692 GGCTO75223 188 aaKnown RBP6.89□□□□□ -1.31
VPS39-207ENST00000563692 ELANEP08246 267 aa6.89□□□□□ -1.31
VPS39-207ENST00000563692 ATF4P18848 351 aaPredicted RBP6.89□□□□□ -1.31
VPS39-207ENST00000563692 S100PP25815 95 aa6.89□□□□□ -1.31
VPS39-207ENST00000563692 MYCNOSP40205 109 aa6.89□□□□□ -1.31
VPS39-207ENST00000563692 UBE2G1P62253 170 aa6.89□□□□□ -1.31
VPS39-207ENST00000563692 PDE6HQ13956 83 aa6.89□□□□□ -1.31
VPS39-207ENST00000563692 LINC01551Q86U37 167 aa6.89□□□□□ -1.31
VPS39-207ENST00000563692 C5orf17Q8NAS9 161 aa6.89□□□□□ -1.31
VPS39-207ENST00000563692 OR5B12Q96R08 314 aa6.89□□□□□ -1.31
VPS39-207ENST00000563692 Q9H3A6 140 aa6.89□□□□□ -1.31
VPS39-207ENST00000563692 AAMDCQ9H7C9 122 aa6.89□□□□□ -1.31
VPS39-207ENST00000563692 ZNF586Q9NXT0 402 aa6.89□□□□□ -1.31
VPS39-207ENST00000563692 COLCA2A8K830 154 aa6.88□□□□□ -1.31
VPS39-207ENST00000563692 ZNF785A8K8V0 405 aa6.88□□□□□ -1.31
VPS39-207ENST00000563692 PPP5D1E7EU14 171 aa6.88□□□□□ -1.31
VPS39-207ENST00000563692 H7BYZ3 331 aa6.88□□□□□ -1.31
VPS39-207ENST00000563692 PEX7O00628 323 aa6.88□□□□□ -1.31
VPS39-207ENST00000563692 IGLC2P0DOY2 106 aa6.88□□□□□ -1.31
VPS39-207ENST00000563692 PSMB8P28062 276 aa6.88□□□□□ -1.31
VPS39-207ENST00000563692 GALR1P47211 349 aa6.88□□□□□ -1.31
VPS39-207ENST00000563692 CSN1S1P47710 185 aa6.88□□□□□ -1.31
VPS39-207ENST00000563692 MEOX2P50222 304 aa6.88□□□□□ -1.31
VPS39-207ENST00000563692 FOXE3Q13461 319 aa6.88□□□□□ -1.31
VPS39-207ENST00000563692 RNF212Q495C1 297 aa6.88□□□□□ -1.31
VPS39-207ENST00000563692 FAM106AQ4KMX7 169 aa6.88□□□□□ -1.31
VPS39-207ENST00000563692 OCC1Q8TAD7 63 aa6.88□□□□□ -1.31
VPS39-207ENST00000563692 C2CD4CQ8TF44 421 aa6.88□□□□□ -1.31
VPS39-207ENST00000563692 GRAMD2BQ96HH9 432 aa6.88□□□□□ -1.31
VPS39-207ENST00000563692 ZNF414Q96IQ9 312 aa6.88□□□□□ -1.31
VPS39-207ENST00000563692 BTF3L4Q96K17 158 aa6.88□□□□□ -1.31
VPS39-207ENST00000563692 ATG101Q9BSB4 218 aa6.88□□□□□ -1.31
VPS39-207ENST00000563692 DERL1Q9BUN8 251 aa6.88□□□□□ -1.31
VPS39-207ENST00000563692 KLK15Q9H2R5 256 aa6.88□□□□□ -1.31
VPS39-207ENST00000563692 ZFAND3Q9H8U3 227 aa6.88□□□□□ -1.31
VPS39-207ENST00000563692 ZNF702PQ9H963 129 aa6.88□□□□□ -1.31
VPS39-207ENST00000563692 BIN3Q9NQY0 253 aa6.88□□□□□ -1.31
VPS39-207ENST00000563692 PEF1Q9UBV8 284 aaKnown RBP6.88□□□□□ -1.31
VPS39-207ENST00000563692 TMA7Q9Y2S6 64 aaKnown RBP6.88□□□□□ -1.31
VPS39-207ENST00000563692 IGHV3-35A0A0C4DH35 117 aa6.87□□□□□ -1.31
VPS39-207ENST00000563692 SERTM2A0A1B0GWG4 89 aa6.87□□□□□ -1.31
VPS39-207ENST00000563692 A0A1W2PS18 150 aa6.87□□□□□ -1.31
VPS39-207ENST00000563692 MRPS12O15235 138 aaKnown RBP6.87□□□□□ -1.31
VPS39-207ENST00000563692 BUB3O43684 328 aa6.87□□□□□ -1.31
VPS39-207ENST00000563692 ZNF253O75346 499 aa6.87□□□□□ -1.31
VPS39-207ENST00000563692 IGHV3-11P01762 117 aa6.87□□□□□ -1.31
VPS39-207ENST00000563692 SNRPCP09234 159 aaKnown RBP6.87□□□□□ -1.31
VPS39-207ENST00000563692 TMEM183BQ1AE95 376 aa6.87□□□□□ -1.31
VPS39-207ENST00000563692 KCNIP4Q6PIL6 250 aa6.87□□□□□ -1.31
VPS39-207ENST00000563692 BAGE2Q86Y30 109 aa6.87□□□□□ -1.31
VPS39-207ENST00000563692 Q8N2B8 174 aa6.87□□□□□ -1.31
VPS39-207ENST00000563692 FAM24BQ8N5W8 94 aa6.87□□□□□ -1.31
VPS39-207ENST00000563692 ARL6IP6Q8N6S5 226 aa6.87□□□□□ -1.31
VPS39-207ENST00000563692 OR10G8Q8NGN5 311 aa6.87□□□□□ -1.31
VPS39-207ENST00000563692 ISOC2Q96AB3 205 aa6.87□□□□□ -1.31
VPS39-207ENST00000563692 SMIM12Q96EX1 92 aa6.87□□□□□ -1.31
VPS39-207ENST00000563692 FMC1Q96HJ9 113 aa6.87□□□□□ -1.31
VPS39-207ENST00000563692 IMMP2LQ96T52 175 aa6.87□□□□□ -1.31
VPS39-207ENST00000563692 ZNF320A2RRD8 509 aa6.86□□□□□ -1.31
VPS39-207ENST00000563692 FBLL1A6NHQ2 334 aaKnown RBP6.86□□□□□ -1.31
VPS39-207ENST00000563692 H3BTX0 84 aa6.86□□□□□ -1.31
VPS39-207ENST00000563692 TCRAP04437 139 aa6.86□□□□□ -1.31
VPS39-207ENST00000563692 BMI1P35226 326 aa6.86□□□□□ -1.31
VPS39-207ENST00000563692 KRTAP10-3P60369 221 aa6.86□□□□□ -1.31
VPS39-207ENST00000563692 ERVFC1-1P60608 527 aa6.86□□□□□ -1.31
VPS39-207ENST00000563692 DEFA6Q01524 100 aa6.86□□□□□ -1.31
VPS39-207ENST00000563692 CENPWQ5EE01 88 aa6.86□□□□□ -1.31
VPS39-207ENST00000563692 KLHDC1Q8N7A1 406 aa6.86□□□□□ -1.31
VPS39-207ENST00000563692 SFRP2Q96HF1 295 aa6.86□□□□□ -1.31
VPS39-207ENST00000563692 UBE2E2Q96LR5 201 aa6.86□□□□□ -1.31
VPS39-207ENST00000563692 CLEC5AQ9NY25 188 aa6.86□□□□□ -1.31
VPS39-207ENST00000563692 KLF12Q9Y4X4 402 aa6.86□□□□□ -1.31
VPS39-207ENST00000563692 WNK1Q9H4A3 2382 aa6.86□□□□□ -1.31
VPS39-207ENST00000563692 TRBV6-1A0A0K0K1D8 114 aa6.85□□□□□ -1.31
VPS39-207ENST00000563692 K7EMT4 169 aa6.85□□□□□ -1.31
VPS39-207ENST00000563692 GCGP01275 180 aa6.85□□□□□ -1.31
VPS39-207ENST00000563692 MGST1P10620 155 aaKnown RBP6.85□□□□□ -1.31
VPS39-207ENST00000563692 GNG5P63218 68 aa6.85□□□□□ -1.31
VPS39-207ENST00000563692 RPL19P84098 196 aaKnown RBP6.85□□□□□ -1.31
VPS39-207ENST00000563692 ELOBQ15370 118 aa6.85□□□□□ -1.31
VPS39-207ENST00000563692 TMEM95Q3KNT9 176 aa6.85□□□□□ -1.31
VPS39-207ENST00000563692 GPHB5Q86YW7 130 aa6.85□□□□□ -1.31
VPS39-207ENST00000563692 EXOC3-AS1Q8N2X6 119 aa6.85□□□□□ -1.31
VPS39-207ENST00000563692 C11orf44Q8N8P7 122 aa6.85□□□□□ -1.31
VPS39-207ENST00000563692 AURKAIP1Q9NWT8 199 aaPredicted RBP6.85□□□□□ -1.31
VPS39-207ENST00000563692 MLXQ9UH92 298 aa6.85□□□□□ -1.31
VPS39-207ENST00000563692 RPH3ALQ9UNE2 315 aa6.85□□□□□ -1.31
VPS39-207ENST00000563692 UFC1Q9Y3C8 167 aa6.85□□□□□ -1.31
VPS39-207ENST00000563692 U3KQE9 123 aa6.85□□□□□ -1.31
VPS39-207ENST00000563692 TRBV20OR9-2A0A075B6H5 130 aa6.84□□□□□ -1.31
VPS39-207ENST00000563692 IGHV3OR16-8A0A075B7F1 116 aa6.84□□□□□ -1.31
VPS39-207ENST00000563692 A0A087X0K7 114 aa6.84□□□□□ -1.31
VPS39-207ENST00000563692 PGPEP1LA6NFU8 196 aa6.84□□□□□ -1.31
VPS39-207ENST00000563692 C1orf196B1AJZ1 125 aa6.84□□□□□ -1.31
VPS39-207ENST00000563692 ISLRO14498 428 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 311.8 ms