RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 HIGD1AQ9Y241 93 aa4.29□□□□□ -1.72
LIMA1-212ENST00000552491 SELENOKQ9Y6D0 94 aa4.29□□□□□ -1.72
LIMA1-212ENST00000552491 LRBAP50851 2863 aa4.29□□□□□ -1.72
LIMA1-212ENST00000552491 ZFHX3Q15911 3703 aa4.29□□□□□ -1.72
LIMA1-212ENST00000552491 A0A1B0GUT8 65 aa4.28□□□□□ -1.72
LIMA1-212ENST00000552491 NDUFB3O43676 98 aa4.28□□□□□ -1.72
LIMA1-212ENST00000552491 CEACAM4O75871 244 aa4.28□□□□□ -1.72
LIMA1-212ENST00000552491 IGKV1-17P01599 117 aa4.28□□□□□ -1.72
LIMA1-212ENST00000552491 PPBPP02775 128 aa4.28□□□□□ -1.72
LIMA1-212ENST00000552491 THBDP07204 575 aa4.28□□□□□ -1.72
LIMA1-212ENST00000552491 IGHV1-8P0DP01 117 aa4.28□□□□□ -1.72
LIMA1-212ENST00000552491 HTR1DP28221 377 aa4.28□□□□□ -1.72
LIMA1-212ENST00000552491 PSG9Q00887 426 aa4.28□□□□□ -1.72
LIMA1-212ENST00000552491 COTL1Q14019 142 aa4.28□□□□□ -1.72
LIMA1-212ENST00000552491 TMEM155Q4W5P6 130 aa4.28□□□□□ -1.72
LIMA1-212ENST00000552491 WFDC8Q8IUA0 241 aa4.28□□□□□ -1.72
LIMA1-212ENST00000552491 GATD1Q8NB37 220 aa4.28□□□□□ -1.72
LIMA1-212ENST00000552491 IGFBPL1Q8WX77 278 aa4.28□□□□□ -1.72
LIMA1-212ENST00000552491 SRSF12Q8WXF0 261 aaKnown RBP4.28□□□□□ -1.72
LIMA1-212ENST00000552491 TMEM190Q8WZ59 177 aa4.28□□□□□ -1.72
LIMA1-212ENST00000552491 ZNF747Q9BV97 191 aa4.28□□□□□ -1.72
LIMA1-212ENST00000552491 CST9LQ9H4G1 147 aa4.28□□□□□ -1.72
LIMA1-212ENST00000552491 SIGLEC9Q9Y336 463 aa4.28□□□□□ -1.72
LIMA1-212ENST00000552491 A0A1B0GW15 77 aa4.28□□□□□ -1.72
LIMA1-212ENST00000552491 M0R3E3 92 aa4.28□□□□□ -1.72
LIMA1-212ENST00000552491 COX8AP10176 69 aa4.28□□□□□ -1.72
LIMA1-212ENST00000552491 GPR183P32249 361 aa4.28□□□□□ -1.72
LIMA1-212ENST00000552491 TCTAP57738 103 aa4.28□□□□□ -1.72
LIMA1-212ENST00000552491 FXYD7P58549 80 aa4.28□□□□□ -1.72
LIMA1-212ENST00000552491 ARF6P62330 175 aa4.28□□□□□ -1.72
LIMA1-212ENST00000552491 BSPH1Q075Z2 132 aa4.28□□□□□ -1.72
LIMA1-212ENST00000552491 RIGQ13278 110 aa4.28□□□□□ -1.72
LIMA1-212ENST00000552491 TMEM108Q6UXF1 575 aa4.28□□□□□ -1.72
LIMA1-212ENST00000552491 AP5S1Q9NUS5 200 aa4.28□□□□□ -1.72
LIMA1-212ENST00000552491 F11RQ9Y624 299 aaKnown RBP4.28□□□□□ -1.72
LIMA1-212ENST00000552491 ABCA4P78363 2273 aa4.28□□□□□ -1.72
LIMA1-212ENST00000552491 I3L2K1 104 aa4.28□□□□□ -1.73
LIMA1-212ENST00000552491 FTH1P19P0C7X4 201 aa4.28□□□□□ -1.73
LIMA1-212ENST00000552491 FGF6P10767 208 aa4.28□□□□□ -1.73
LIMA1-212ENST00000552491 IFI27P40305 119 aaPredicted RBP4.28□□□□□ -1.73
LIMA1-212ENST00000552491 CSN1S1P47710 185 aa4.28□□□□□ -1.73
LIMA1-212ENST00000552491 OCIAD2Q56VL3 154 aa4.28□□□□□ -1.73
LIMA1-212ENST00000552491 SIGLEC15Q6ZMC9 328 aa4.28□□□□□ -1.73
LIMA1-212ENST00000552491 ASCL5Q7RTU5 278 aa4.28□□□□□ -1.73
LIMA1-212ENST00000552491 PIP4P1Q86T03 277 aa4.28□□□□□ -1.73
LIMA1-212ENST00000552491 TMEM133Q9H2Q1 129 aa4.28□□□□□ -1.73
LIMA1-212ENST00000552491 FBXL15Q9H469 300 aa4.28□□□□□ -1.73
LIMA1-212ENST00000552491 PEF1Q9UBV8 284 aaKnown RBP4.28□□□□□ -1.73
LIMA1-212ENST00000552491 TRBV19A0A075B6N1 114 aa4.27□□□□□ -1.73
LIMA1-212ENST00000552491 TMEM213A2RRL7 107 aa4.27□□□□□ -1.73
LIMA1-212ENST00000552491 RBP4P02753 201 aa4.27□□□□□ -1.73
LIMA1-212ENST00000552491 RBPJQ06330 500 aa4.27□□□□□ -1.73
LIMA1-212ENST00000552491 Q6ZS92 163 aa4.27□□□□□ -1.73
LIMA1-212ENST00000552491 PPP1R27Q86WC6 154 aa4.27□□□□□ -1.73
LIMA1-212ENST00000552491 BPIFA4PQ86YQ2 179 aa4.27□□□□□ -1.73
LIMA1-212ENST00000552491 TMEM75Q8N9X5 138 aa4.27□□□□□ -1.73
LIMA1-212ENST00000552491 OR10AG1Q8NH19 301 aa4.27□□□□□ -1.73
LIMA1-212ENST00000552491 PRSS3P2Q8NHM4 247 aa4.27□□□□□ -1.73
LIMA1-212ENST00000552491 DPF1Q92782 380 aa4.27□□□□□ -1.73
LIMA1-212ENST00000552491 C8orf49Q96NF6 230 aa4.27□□□□□ -1.73
LIMA1-212ENST00000552491 TPPP3Q9BW30 176 aa4.27□□□□□ -1.73
LIMA1-212ENST00000552491 S4R3C0 116 aa4.27□□□□□ -1.73
LIMA1-212ENST00000552491 WNK2Q9Y3S1 2297 aa4.27□□□□□ -1.73
LIMA1-212ENST00000552491 SPTBN2O15020 2390 aa4.27□□□□□ -1.73
LIMA1-212ENST00000552491 TMSB15BA0A087X1C1 80 aa4.27□□□□□ -1.73
LIMA1-212ENST00000552491 IGHV1-3A0A0C4DH29 117 aa4.27□□□□□ -1.73
LIMA1-212ENST00000552491 A0A0G2JNJ9 132 aa4.27□□□□□ -1.73
LIMA1-212ENST00000552491 LOC389332A0A1B0GUA5 103 aa4.27□□□□□ -1.73
LIMA1-212ENST00000552491 A0A1W2PRD5 423 aa4.27□□□□□ -1.73
LIMA1-212ENST00000552491 A0A1W2PRF3 423 aa4.27□□□□□ -1.73
LIMA1-212ENST00000552491 A0A1W2PRM7 423 aa4.27□□□□□ -1.73
LIMA1-212ENST00000552491 K7EIM0 57 aa4.27□□□□□ -1.73
LIMA1-212ENST00000552491 MRPS12O15235 138 aaKnown RBP4.27□□□□□ -1.73
LIMA1-212ENST00000552491 IGLV1-47P01700 117 aa4.27□□□□□ -1.73
LIMA1-212ENST00000552491 Q6AWC8 147 aa4.27□□□□□ -1.73
LIMA1-212ENST00000552491 IGFL3Q6UXB1 125 aa4.27□□□□□ -1.73
LIMA1-212ENST00000552491 FA2HQ7L5A8 372 aa4.27□□□□□ -1.73
LIMA1-212ENST00000552491 LYPD1Q8N2G4 141 aa4.27□□□□□ -1.73
LIMA1-212ENST00000552491 JMJD8Q96S16 334 aa4.27□□□□□ -1.73
LIMA1-212ENST00000552491 NGBQ9NPG2 151 aa4.27□□□□□ -1.73
LIMA1-212ENST00000552491 KAAG1Q9UBP8 84 aa4.27□□□□□ -1.73
LIMA1-212ENST00000552491 Q9UFV3 132 aa4.27□□□□□ -1.73
LIMA1-212ENST00000552491 PSG8Q9UQ74 426 aa4.27□□□□□ -1.73
LIMA1-212ENST00000552491 GAGE12BA1L429 117 aa4.26□□□□□ -1.73
LIMA1-212ENST00000552491 C7orf71A4D174 169 aa4.26□□□□□ -1.73
LIMA1-212ENST00000552491 D6R8Y8 96 aa4.26□□□□□ -1.73
LIMA1-212ENST00000552491 LYNX1G3V0Z9 82 aa4.26□□□□□ -1.73
LIMA1-212ENST00000552491 K7EQM0 130 aa4.26□□□□□ -1.73
LIMA1-212ENST00000552491 LYNX1P0DP58 116 aa4.26□□□□□ -1.73
LIMA1-212ENST00000552491 UQCRFS1P47985 274 aa4.26□□□□□ -1.73
LIMA1-212ENST00000552491 SEC11AP67812 179 aa4.26□□□□□ -1.73
LIMA1-212ENST00000552491 TMEM97Q5BJF2 176 aa4.26□□□□□ -1.73
LIMA1-212ENST00000552491 KLF17Q5JT82 389 aaPredicted RBP4.26□□□□□ -1.73
LIMA1-212ENST00000552491 ZNF493Q6ZR52 646 aa4.26□□□□□ -1.73
LIMA1-212ENST00000552491 AMN1Q8IY45 258 aa4.26□□□□□ -1.73
LIMA1-212ENST00000552491 OR8A1Q8NGG7 326 aa4.26□□□□□ -1.73
LIMA1-212ENST00000552491 TNFRSF14Q92956 283 aa4.26□□□□□ -1.73
LIMA1-212ENST00000552491 RNASE6Q93091 150 aaKnown RBP4.26□□□□□ -1.73
LIMA1-212ENST00000552491 RASL11BQ9BPW5 248 aa4.26□□□□□ -1.73
LIMA1-212ENST00000552491 NAA38Q9BRA0 125 aaKnown RBP4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms