RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 ERVK-16P61578 105 aa4.22□□□□□ -1.73
USP28-213ENST00000544967 SRYQ05066 204 aa4.22□□□□□ -1.73
USP28-213ENST00000544967 FXYD3Q14802 87 aa4.22□□□□□ -1.73
USP28-213ENST00000544967 SLC25A33Q9BSK2 321 aa4.22□□□□□ -1.73
USP28-213ENST00000544967 LINC00312Q9Y6C7 94 aa4.22□□□□□ -1.73
USP28-213ENST00000544967 U3KQK5 164 aa4.22□□□□□ -1.73
USP28-213ENST00000544967 FLNBO75369 2602 aaKnown RBP4.22□□□□□ -1.73
USP28-213ENST00000544967 C15orf61A6NNL5 157 aa4.22□□□□□ -1.73
USP28-213ENST00000544967 APOHP02749 345 aaPredicted RBP4.22□□□□□ -1.73
USP28-213ENST00000544967 TCTAP57738 103 aa4.22□□□□□ -1.73
USP28-213ENST00000544967 CR1LQ2VPA4 569 aa4.22□□□□□ -1.73
USP28-213ENST00000544967 ZNF474Q6S9Z5 364 aaPredicted RBP4.22□□□□□ -1.73
USP28-213ENST00000544967 ZNF493Q6ZR52 646 aa4.22□□□□□ -1.73
USP28-213ENST00000544967 SLC25A48Q6ZT89 311 aaKnown RBP4.22□□□□□ -1.73
USP28-213ENST00000544967 FMC1Q96HJ9 113 aa4.22□□□□□ -1.73
USP28-213ENST00000544967 AP5S1Q9NUS5 200 aa4.22□□□□□ -1.73
USP28-213ENST00000544967 THYN1Q9P016 225 aa4.22□□□□□ -1.73
USP28-213ENST00000544967 MYO18BQ8IUG5 2567 aa4.21□□□□□ -1.74
USP28-213ENST00000544967 MGST3O14880 152 aa4.21□□□□□ -1.74
USP28-213ENST00000544967 FOXF2Q12947 444 aa4.21□□□□□ -1.74
USP28-213ENST00000544967 TMEM30BQ3MIR4 351 aa4.21□□□□□ -1.74
USP28-213ENST00000544967 C2orf83Q53S99 150 aa4.21□□□□□ -1.74
USP28-213ENST00000544967 C8orf86Q6ZUL3 223 aa4.21□□□□□ -1.74
USP28-213ENST00000544967 MIR17HGQ75NE6 70 aa4.21□□□□□ -1.74
USP28-213ENST00000544967 C11orf44Q8N8P7 122 aa4.21□□□□□ -1.74
USP28-213ENST00000544967 BAALCQ8WXS3 180 aa4.21□□□□□ -1.74
USP28-213ENST00000544967 RTL8AQ9BWD3 113 aa4.21□□□□□ -1.74
USP28-213ENST00000544967 SLC25A2Q9BXI2 301 aa4.21□□□□□ -1.74
USP28-213ENST00000544967 SERTAD4Q9NUC0 356 aa4.21□□□□□ -1.74
USP28-213ENST00000544967 TMEM14BQ9NUH8 114 aa4.21□□□□□ -1.74
USP28-213ENST00000544967 PRO0461Q9UI25 63 aa4.21□□□□□ -1.74
USP28-213ENST00000544967 DOPEY1Q5JWR5 2465 aa4.21□□□□□ -1.74
USP28-213ENST00000544967 CCL21O00585 134 aa4.21□□□□□ -1.74
USP28-213ENST00000544967 CXCL13O43927 109 aa4.21□□□□□ -1.74
USP28-213ENST00000544967 OR2H2O95918 312 aa4.21□□□□□ -1.74
USP28-213ENST00000544967 MGST1P10620 155 aaKnown RBP4.21□□□□□ -1.74
USP28-213ENST00000544967 GAGE5Q13069 117 aa4.21□□□□□ -1.74
USP28-213ENST00000544967 GAGE6Q13070 117 aa4.21□□□□□ -1.74
USP28-213ENST00000544967 SPATA31B1PQ5VZV4 182 aa4.21□□□□□ -1.74
USP28-213ENST00000544967 Q6Q795 121 aa4.21□□□□□ -1.74
USP28-213ENST00000544967 ZNF329Q86UD4 541 aa4.21□□□□□ -1.74
USP28-213ENST00000544967 OR5AN1Q8NGI8 311 aa4.21□□□□□ -1.74
USP28-213ENST00000544967 OR1L8Q8NGR8 309 aa4.21□□□□□ -1.74
USP28-213ENST00000544967 FAM167A-AS1Q96KT0 104 aa4.21□□□□□ -1.74
USP28-213ENST00000544967 SPANXDQ9BXN6 97 aa4.21□□□□□ -1.74
USP28-213ENST00000544967 TCF19Q9Y242 345 aa4.21□□□□□ -1.74
USP28-213ENST00000544967 RELNP78509 3460 aa4.21□□□□□ -1.74
USP28-213ENST00000544967 HRNRQ86YZ3 2850 aaPredicted RBP4.21□□□□□ -1.74
USP28-213ENST00000544967 DEFA4P12838 97 aa4.2□□□□□ -1.74
USP28-213ENST00000544967 HSPE1P61604 102 aaKnown RBP4.2□□□□□ -1.74
USP28-213ENST00000544967 ZNF816Q0VGE8 651 aaPredicted RBP4.2□□□□□ -1.74
USP28-213ENST00000544967 LINC01620Q4KN68 170 aa4.2□□□□□ -1.74
USP28-213ENST00000544967 MYO7BQ6PIF6 2116 aa4.2□□□□□ -1.74
USP28-213ENST00000544967 AAED1Q7RTV5 226 aa4.2□□□□□ -1.74
USP28-213ENST00000544967 IL1F10Q8WWZ1 152 aa4.2□□□□□ -1.74
USP28-213ENST00000544967 HS3ST6Q96QI5 342 aa4.2□□□□□ -1.74
USP28-213ENST00000544967 INSIG2Q9Y5U4 225 aa4.2□□□□□ -1.74
USP28-213ENST00000544967 J3QLI3 93 aa4.2□□□□□ -1.74
USP28-213ENST00000544967 TNFRSF13BO14836 293 aaPredicted RBP4.2□□□□□ -1.74
USP28-213ENST00000544967 FOXH1O75593 365 aa4.2□□□□□ -1.74
USP28-213ENST00000544967 LTAP01374 205 aa4.2□□□□□ -1.74
USP28-213ENST00000544967 IGKV3-15P01624 115 aa4.2□□□□□ -1.74
USP28-213ENST00000544967 RIGQ13278 110 aa4.2□□□□□ -1.74
USP28-213ENST00000544967 LINC01600Q96MT4 127 aa4.2□□□□□ -1.74
USP28-213ENST00000544967 C1QTNF4Q9BXJ3 329 aa4.2□□□□□ -1.74
USP28-213ENST00000544967 ZNF355PQ9NSJ1 428 aa4.2□□□□□ -1.74
USP28-213ENST00000544967 PRNDQ9UKY0 176 aa4.2□□□□□ -1.74
USP28-213ENST00000544967 FLNCQ14315 2725 aa4.2□□□□□ -1.74
USP28-213ENST00000544967 PDZD2O15018 2839 aa4.2□□□□□ -1.74
USP28-213ENST00000544967 C12orf77C9JDV5 145 aa4.2□□□□□ -1.74
USP28-213ENST00000544967 TMEM262E9PQX1 116 aa4.2□□□□□ -1.74
USP28-213ENST00000544967 EVI2AP22794 236 aa4.2□□□□□ -1.74
USP28-213ENST00000544967 FABP6P51161 128 aa4.2□□□□□ -1.74
USP28-213ENST00000544967 MEF2CQ06413 473 aaPredicted RBP4.2□□□□□ -1.74
USP28-213ENST00000544967 ZNF788Q6ZQV5 615 aa4.2□□□□□ -1.74
USP28-213ENST00000544967 LINC00173Q6ZV60 143 aa4.2□□□□□ -1.74
USP28-213ENST00000544967 C8orf31Q8N9H6 132 aa4.2□□□□□ -1.74
USP28-213ENST00000544967 KIR2DL5BQ8NHK3 375 aa4.2□□□□□ -1.74
USP28-213ENST00000544967 DDB2Q92466 427 aa4.2□□□□□ -1.74
USP28-213ENST00000544967 FAM168AQ92567 244 aa4.2□□□□□ -1.74
USP28-213ENST00000544967 FLYWCH2Q96CP2 140 aaKnown RBP4.2□□□□□ -1.74
USP28-213ENST00000544967 RALYQ9UKM9 306 aaKnown RBP4.2□□□□□ -1.74
USP28-213ENST00000544967 SLC25A15Q9Y619 301 aa4.2□□□□□ -1.74
USP28-213ENST00000544967 V9GYY9 64 aa4.2□□□□□ -1.74
USP28-213ENST00000544967 ZNF407Q9C0G0 2248 aa4.19□□□□□ -1.74
USP28-213ENST00000544967 CHEK1O14757 476 aa4.19□□□□□ -1.74
USP28-213ENST00000544967 SPINK4O60575 86 aa4.19□□□□□ -1.74
USP28-213ENST00000544967 NGFP01138 241 aa4.19□□□□□ -1.74
USP28-213ENST00000544967 HOXB4P17483 251 aaPredicted RBP4.19□□□□□ -1.74
USP28-213ENST00000544967 IGHV1-2P23083 117 aa4.19□□□□□ -1.74
USP28-213ENST00000544967 CA6P23280 308 aa4.19□□□□□ -1.74
USP28-213ENST00000544967 PAX8Q06710 450 aa4.19□□□□□ -1.74
USP28-213ENST00000544967 LYRM7Q5U5X0 104 aa4.19□□□□□ -1.74
USP28-213ENST00000544967 ENY2Q9NPA8 101 aa4.19□□□□□ -1.74
USP28-213ENST00000544967 SPANXCQ9NY87 97 aa4.19□□□□□ -1.74
USP28-213ENST00000544967 PSG8Q9UQ74 426 aa4.19□□□□□ -1.74
USP28-213ENST00000544967 FBN2P35556 2912 aa4.19□□□□□ -1.74
USP28-213ENST00000544967 ZNF462Q96JM2 2506 aa4.19□□□□□ -1.74
USP28-213ENST00000544967 POLEQ07864 2286 aa4.19□□□□□ -1.74
USP28-213ENST00000544967 KBTBD11-OT1A0A1B0GTJ5 212 aa4.19□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 78.8 ms