RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, human

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-209	ENST00000542286	KLF5	Q13887	457 aa	Predicted RBP	11.68	□□□□□ -0.54
DDX55-209	ENST00000542286	TMEM116	Q8NCL8	245 aa		11.68	□□□□□ -0.54
DDX55-209	ENST00000542286	PERP	Q96FX8	193 aa		11.68	□□□□□ -0.54
DDX55-209	ENST00000542286	SH2D7	A6NKC9	451 aa	Predicted RBP	11.67	□□□□□ -0.54
DDX55-209	ENST00000542286	GP9	P14770	177 aa		11.67	□□□□□ -0.54
DDX55-209	ENST00000542286	SLC25A34	Q6PIV7	304 aa		11.67	□□□□□ -0.54
DDX55-209	ENST00000542286	WIPF2	Q8TF74	440 aa	Predicted RBP	11.67	□□□□□ -0.54
DDX55-209	ENST00000542286	MEGF9	Q9H1U4	602 aa		11.67	□□□□□ -0.54
DDX55-209	ENST00000542286	EPDR1	Q9UM22	224 aa		11.67	□□□□□ -0.54
DDX55-209	ENST00000542286	CACNA1A	O00555	2505 aa		11.67	□□□□□ -0.54
DDX55-209	ENST00000542286	MYO18B	Q8IUG5	2567 aa		11.67	□□□□□ -0.54
DDX55-209	ENST00000542286		I3L2K1	104 aa		11.67	□□□□□ -0.54
DDX55-209	ENST00000542286	IGKV1-17	P01599	117 aa		11.67	□□□□□ -0.54
DDX55-209	ENST00000542286	HTR1D	P28221	377 aa		11.67	□□□□□ -0.54
DDX55-209	ENST00000542286	UQCRFS1	P47985	274 aa		11.67	□□□□□ -0.54
DDX55-209	ENST00000542286	NDP	Q00604	133 aa		11.67	□□□□□ -0.54
DDX55-209	ENST00000542286	C12orf54	Q6X4T0	127 aa		11.67	□□□□□ -0.54
DDX55-209	ENST00000542286	USP9X	Q93008	2570 aa	Predicted RBP	11.67	□□□□□ -0.54
DDX55-209	ENST00000542286	NCBP2L	A6PVI3	153 aa	Known RBP	11.67	□□□□□ -0.54
DDX55-209	ENST00000542286	MYCNOS	P40205	109 aa		11.67	□□□□□ -0.54
DDX55-209	ENST00000542286	RIPPLY3	P57055	190 aa		11.67	□□□□□ -0.54
DDX55-209	ENST00000542286	SMIM12	Q96EX1	92 aa		11.67	□□□□□ -0.54
DDX55-209	ENST00000542286	RAB1B	Q9H0U4	201 aa		11.67	□□□□□ -0.54
DDX55-209	ENST00000542286		Q9H3A6	140 aa		11.67	□□□□□ -0.54
DDX55-209	ENST00000542286	TRAV8-6	A0A0B4J262	113 aa		11.66	□□□□□ -0.54
DDX55-209	ENST00000542286	RASL11A	Q6T310	242 aa		11.66	□□□□□ -0.54
DDX55-209	ENST00000542286	NUP35	Q8NFH5	326 aa		11.66	□□□□□ -0.54
DDX55-209	ENST00000542286	TRGV9	Q99603	122 aa		11.66	□□□□□ -0.54
DDX55-209	ENST00000542286	POLQ	O75417	2590 aa		11.66	□□□□□ -0.54
DDX55-209	ENST00000542286		K7EIM0	57 aa		11.66	□□□□□ -0.54
DDX55-209	ENST00000542286	SAP30	O75446	220 aa		11.66	□□□□□ -0.54
DDX55-209	ENST00000542286	CLEC2A	Q6UVW9	174 aa		11.66	□□□□□ -0.54
DDX55-209	ENST00000542286	SSX8	Q7RTT4	187 aa		11.66	□□□□□ -0.54
DDX55-209	ENST00000542286	CIART	Q8N365	385 aa	Predicted RBP	11.66	□□□□□ -0.54
DDX55-209	ENST00000542286	ZC2HC1A	Q96GY0	325 aa		11.66	□□□□□ -0.54
DDX55-209	ENST00000542286	FBXL19-AS1	Q494R0	122 aa		11.65	□□□□□ -0.54
DDX55-209	ENST00000542286	LINC00173	Q6ZV60	143 aa		11.65	□□□□□ -0.54
DDX55-209	ENST00000542286	CFHR4	Q92496	578 aa		11.65	□□□□□ -0.54
DDX55-209	ENST00000542286	TNFRSF14	Q92956	283 aa		11.65	□□□□□ -0.54
DDX55-209	ENST00000542286	URB1-AS1	Q96HZ7	61 aa		11.65	□□□□□ -0.54
DDX55-209	ENST00000542286	RASL11B	Q9BPW5	248 aa		11.65	□□□□□ -0.54
DDX55-209	ENST00000542286	SLC25A39	Q9BZJ4	359 aa	Predicted RBP	11.65	□□□□□ -0.54
DDX55-209	ENST00000542286	DPM3	Q9P2X0	92 aa		11.65	□□□□□ -0.54
DDX55-209	ENST00000542286	CHTOP	Q9Y3Y2	248 aa	Known RBP	11.65	□□□□□ -0.54
DDX55-209	ENST00000542286	IGSF10	Q6WRI0	2623 aa		11.65	□□□□□ -0.54
DDX55-209	ENST00000542286	HIGD1C	A8MV81	97 aa		11.65	□□□□□ -0.54
DDX55-209	ENST00000542286	CD5L	O43866	347 aa		11.65	□□□□□ -0.54
DDX55-209	ENST00000542286	LY6G5B	Q8NDX9	201 aa		11.65	□□□□□ -0.54
DDX55-209	ENST00000542286	HIGD1A	Q9Y241	93 aa		11.65	□□□□□ -0.54
DDX55-209	ENST00000542286	SYS1-DBNDD2	H3BUS1	97 aa		11.64	□□□□□ -0.55
DDX55-209	ENST00000542286	CRX	O43186	299 aa	Predicted RBP	11.64	□□□□□ -0.55
DDX55-209	ENST00000542286	FAM120AOS	Q5T036	256 aa		11.64	□□□□□ -0.55
DDX55-209	ENST00000542286		A0A087X0K7	114 aa		11.64	□□□□□ -0.55
DDX55-209	ENST00000542286	NBR2	O15453	112 aa		11.64	□□□□□ -0.55
DDX55-209	ENST00000542286	C11orf71	Q6IPW1	123 aa		11.64	□□□□□ -0.55
DDX55-209	ENST00000542286	GOLT1A	Q6ZVE7	132 aa		11.64	□□□□□ -0.55
DDX55-209	ENST00000542286	VMO1	Q7Z5L0	202 aa		11.64	□□□□□ -0.55
DDX55-209	ENST00000542286	C8orf46	Q8TAG6	207 aa		11.64	□□□□□ -0.55
DDX55-209	ENST00000542286	C7orf69	Q9H7B7	122 aa		11.64	□□□□□ -0.55
DDX55-209	ENST00000542286	UBTD1	Q9HAC8	227 aa		11.64	□□□□□ -0.55
DDX55-209	ENST00000542286	PRPF8	Q6P2Q9	2335 aa	Known RBP eCLIP	11.64	□□□□□ -0.55	3e-7	■■■■■ 28.1
DDX55-209	ENST00000542286	CIDEA	O60543	219 aa		11.63	□□□□□ -0.55
DDX55-209	ENST00000542286	OR2J3	O76001	311 aa		11.63	□□□□□ -0.55
DDX55-209	ENST00000542286	MBD6	Q96DN6	1003 aa		11.63	□□□□□ -0.55
DDX55-209	ENST00000542286	ACACB	O00763	2458 aa		11.63	□□□□□ -0.55
DDX55-209	ENST00000542286	HSBP1L1	C9JCN9	74 aa		11.63	□□□□□ -0.55
DDX55-209	ENST00000542286		M0R3E3	92 aa		11.63	□□□□□ -0.55
DDX55-209	ENST00000542286	IL4	P05112	153 aa		11.63	□□□□□ -0.55
DDX55-209	ENST00000542286	PVRIG	Q6DKI7	326 aa		11.63	□□□□□ -0.55
DDX55-209	ENST00000542286	PRNT	Q86SH4	94 aa		11.63	□□□□□ -0.55
DDX55-209	ENST00000542286	TIMD4	Q96H15	378 aa		11.63	□□□□□ -0.55
DDX55-209	ENST00000542286	ZAN	Q9Y493	2812 aa		11.63	□□□□□ -0.55
DDX55-209	ENST00000542286	ABCA2	Q9BZC7	2435 aa		11.62	□□□□□ -0.55
DDX55-209	ENST00000542286	TCRA	P04437	139 aa		11.62	□□□□□ -0.55
DDX55-209	ENST00000542286	PEF1	Q9UBV8	284 aa	Known RBP	11.62	□□□□□ -0.55
DDX55-209	ENST00000542286	C19orf84	I3L1E1	186 aa		11.62	□□□□□ -0.55
DDX55-209	ENST00000542286	FOXA3	P55318	350 aa	Predicted RBP	11.62	□□□□□ -0.55
DDX55-209	ENST00000542286	IGFL4	Q6B9Z1	124 aa		11.62	□□□□□ -0.55
DDX55-209	ENST00000542286	GRAMD2B	Q96HH9	432 aa		11.62	□□□□□ -0.55
DDX55-209	ENST00000542286	PGLYRP4	Q96LB8	373 aa		11.62	□□□□□ -0.55
DDX55-209	ENST00000542286	MCRIP2	Q9BUT9	160 aa	Known RBP	11.62	□□□□□ -0.55
DDX55-209	ENST00000542286	LEPROTL1	O95214	131 aa		11.62	□□□□□ -0.55
DDX55-209	ENST00000542286	FCGR2B	P31994	310 aa	Predicted RBP	11.62	□□□□□ -0.55
DDX55-209	ENST00000542286	GTSF1	Q8WW33	167 aa		11.62	□□□□□ -0.55
DDX55-209	ENST00000542286	SCRT2	Q9NQ03	307 aa		11.62	□□□□□ -0.55
DDX55-209	ENST00000542286	C1RL	Q9NZP8	487 aa		11.62	□□□□□ -0.55
DDX55-209	ENST00000542286	IGHV3OR16-10	A0A075B7F0	116 aa		11.61	□□□□□ -0.55
DDX55-209	ENST00000542286	IGHV1-24	A0A0C4DH33	117 aa		11.61	□□□□□ -0.55
DDX55-209	ENST00000542286	TMEM191A	Q9H0A3	160 aa		11.61	□□□□□ -0.55
DDX55-209	ENST00000542286	SELENOK	Q9Y6D0	94 aa		11.61	□□□□□ -0.55
DDX55-209	ENST00000542286	GAGE10	A6NGK3	116 aa		11.61	□□□□□ -0.55
DDX55-209	ENST00000542286	CSPG4	Q6UVK1	2322 aa		11.61	□□□□□ -0.55
DDX55-209	ENST00000542286	C7orf71	A4D174	169 aa		11.6	□□□□□ -0.55
DDX55-209	ENST00000542286	HIST1H1A	Q02539	215 aa	Predicted RBP	11.6	□□□□□ -0.55
DDX55-209	ENST00000542286	FAM231D	Q6ZW35	169 aa		11.6	□□□□□ -0.55
DDX55-209	ENST00000542286	FER1L6-AS1	Q8NA97	138 aa		11.6	□□□□□ -0.55
DDX55-209	ENST00000542286	OR11H6	Q8NGC7	330 aa		11.6	□□□□□ -0.55
DDX55-209	ENST00000542286	GPR82	Q96P67	336 aa		11.6	□□□□□ -0.55
DDX55-209	ENST00000542286	USP9Y	O00507	2555 aa	Predicted RBP	11.6	□□□□□ -0.55
DDX55-209	ENST00000542286		H0Y8G0	127 aa		11.6	□□□□□ -0.55

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