RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 S100A4P26447 101 aaKnown RBP0.67□□□□□ -2.3
CD44-215ENST00000525241 ROMO1P60602 79 aa0.67□□□□□ -2.3
CD44-215ENST00000525241 DYNLT1P63172 113 aa0.67□□□□□ -2.3
CD44-215ENST00000525241 BASP1P80723 227 aaKnown RBP0.67□□□□□ -2.3
CD44-215ENST00000525241 C22orf39Q6P5X5 142 aa0.67□□□□□ -2.3
CD44-215ENST00000525241 KRTAP26-1Q6PEX3 210 aa0.67□□□□□ -2.3
CD44-215ENST00000525241 PATE2Q6UY27 113 aa0.67□□□□□ -2.3
CD44-215ENST00000525241 LINC00311Q8N616 119 aa0.67□□□□□ -2.3
CD44-215ENST00000525241 OR4E2Q8NGC2 313 aa0.67□□□□□ -2.3
CD44-215ENST00000525241 AP3S1Q92572 193 aa0.67□□□□□ -2.3
CD44-215ENST00000525241 HOPXQ9BPY8 73 aaPredicted RBP0.67□□□□□ -2.3
CD44-215ENST00000525241 MRPL57Q9BQC6 102 aaKnown RBP0.67□□□□□ -2.3
CD44-215ENST00000525241 IMUPQ9GZP8 106 aa0.67□□□□□ -2.3
CD44-215ENST00000525241 SH3BGRL3Q9H299 93 aa0.67□□□□□ -2.3
CD44-215ENST00000525241 PYCARDQ9ULZ3 195 aa0.67□□□□□ -2.3
CD44-215ENST00000525241 CHCHD2Q9Y6H1 151 aaPredicted RBP0.67□□□□□ -2.3
CD44-215ENST00000525241 HIVEP1P15822 2718 aa0.67□□□□□ -2.3
CD44-215ENST00000525241 PTPRZ1P23471 2315 aaPredicted RBP0.67□□□□□ -2.3
CD44-215ENST00000525241 CNTRLQ7Z7A1 2325 aa0.67□□□□□ -2.3
CD44-215ENST00000525241 FANCMQ8IYD8 2048 aa0.67□□□□□ -2.3
CD44-215ENST00000525241 SMG1Q96Q15 3661 aaKnown RBP0.67□□□□□ -2.3
CD44-215ENST00000525241 TET1Q8NFU7 2136 aa0.67□□□□□ -2.3
CD44-215ENST00000525241 UNC13AQ9UPW8 1703 aa0.67□□□□□ -2.3
CD44-215ENST00000525241 TANC2Q9HCD6 1990 aa0.66□□□□□ -2.3
CD44-215ENST00000525241 APCP25054 2843 aa0.66□□□□□ -2.3
CD44-215ENST00000525241 LOC400499M0QZD8 3231 aa0.66□□□□□ -2.3
CD44-215ENST00000525241 LOC110117498A0A087WWA1 95 aa0.66□□□□□ -2.3
CD44-215ENST00000525241 C7orf71A4D174 169 aa0.66□□□□□ -2.3
CD44-215ENST00000525241 C1orf196B1AJZ1 125 aa0.66□□□□□ -2.3
CD44-215ENST00000525241 TAX1BP3O14907 124 aa0.66□□□□□ -2.3
CD44-215ENST00000525241 HMGB3O15347 200 aaKnown RBP0.66□□□□□ -2.3
CD44-215ENST00000525241 CSN2P05814 226 aa0.66□□□□□ -2.3
CD44-215ENST00000525241 NCALDP61601 193 aa0.66□□□□□ -2.3
CD44-215ENST00000525241 GNG3P63215 75 aa0.66□□□□□ -2.3
CD44-215ENST00000525241 RHOGP84095 191 aa0.66□□□□□ -2.3
CD44-215ENST00000525241 RPL19P84098 196 aaKnown RBP0.66□□□□□ -2.3
CD44-215ENST00000525241 ESRGQ1W209 222 aa0.66□□□□□ -2.3
CD44-215ENST00000525241 SPANXN5Q5MJ07 72 aa0.66□□□□□ -2.3
CD44-215ENST00000525241 SMIM20Q8N5G0 67 aa0.66□□□□□ -2.3
CD44-215ENST00000525241 ZNF418Q8TF45 676 aaPredicted RBP0.66□□□□□ -2.3
CD44-215ENST00000525241 OBSCN-AS1Q96MR7 158 aa0.66□□□□□ -2.3
CD44-215ENST00000525241 GINS4Q9BRT9 223 aa0.66□□□□□ -2.3
CD44-215ENST00000525241 ACER3Q9NUN7 267 aa0.66□□□□□ -2.3
CD44-215ENST00000525241 MED29Q9NX70 200 aa0.66□□□□□ -2.3
CD44-215ENST00000525241 SMPXQ9UHP9 88 aa0.66□□□□□ -2.3
CD44-215ENST00000525241 ASB4Q9Y574 426 aa0.66□□□□□ -2.3
CD44-215ENST00000525241 FER1L6Q2WGJ9 1857 aa0.66□□□□□ -2.3
CD44-215ENST00000525241 IQSEC2Q5JU85 1478 aa0.66□□□□□ -2.3
CD44-215ENST00000525241 WNK1Q9H4A3 2382 aa0.65□□□□□ -2.3
CD44-215ENST00000525241 DNAH14Q0VDD8 3507 aa0.65□□□□□ -2.3
CD44-215ENST00000525241 PEAK1Q9H792 1746 aa0.65□□□□□ -2.31
CD44-215ENST00000525241 TRAV3A0A0B4J244 114 aa0.65□□□□□ -2.31
CD44-215ENST00000525241 TMEM256-PLSCR3K7ERE1 68 aa0.65□□□□□ -2.31
CD44-215ENST00000525241 ATG12O94817 140 aa0.65□□□□□ -2.31
CD44-215ENST00000525241 UBL3O95164 117 aa0.65□□□□□ -2.31
CD44-215ENST00000525241 IFNA1P01562 189 aa0.65□□□□□ -2.31
CD44-215ENST00000525241 IFNA7P01567 189 aa0.65□□□□□ -2.31
CD44-215ENST00000525241 IGLV1-51P01701 117 aa0.65□□□□□ -2.31
CD44-215ENST00000525241 GNG10P50151 68 aa0.65□□□□□ -2.31
CD44-215ENST00000525241 INSL3P51460 131 aa0.65□□□□□ -2.31
CD44-215ENST00000525241 CRYBA4P53673 196 aa0.65□□□□□ -2.31
CD44-215ENST00000525241 CNBPP62633 177 aaKnown RBP0.65□□□□□ -2.31
CD44-215ENST00000525241 GNG5P63218 68 aa0.65□□□□□ -2.31
CD44-215ENST00000525241 POU6F1Q14863 301 aa0.65□□□□□ -2.31
CD44-215ENST00000525241 C1orf137Q5JT78 98 aa0.65□□□□□ -2.31
CD44-215ENST00000525241 BRMS1LQ5PSV4 323 aa0.65□□□□□ -2.31
CD44-215ENST00000525241 DPPA3Q6W0C5 159 aa0.65□□□□□ -2.31
CD44-215ENST00000525241 SOSTDC1Q6X4U4 206 aa0.65□□□□□ -2.31
CD44-215ENST00000525241 PHF13Q86YI8 300 aaPredicted RBP0.65□□□□□ -2.31
CD44-215ENST00000525241 PDZD9Q8IXQ8 264 aa0.65□□□□□ -2.31
CD44-215ENST00000525241 LINC00471Q8N535 108 aa0.65□□□□□ -2.31
CD44-215ENST00000525241 FAM172AQ8WUF8 416 aa0.65□□□□□ -2.31
CD44-215ENST00000525241 CANT1Q8WVQ1 401 aa0.65□□□□□ -2.31
CD44-215ENST00000525241 TEX37Q96LM6 180 aa0.65□□□□□ -2.31
CD44-215ENST00000525241 LYSMD1Q96S90 227 aa0.65□□□□□ -2.31
CD44-215ENST00000525241 PRADC1Q9BSG0 188 aa0.65□□□□□ -2.31
CD44-215ENST00000525241 BOLA2Q9H3K6 86 aa0.65□□□□□ -2.31
CD44-215ENST00000525241 BCL2L10Q9HD36 194 aa0.65□□□□□ -2.31
CD44-215ENST00000525241 LYRM2Q9NU23 88 aaPredicted RBP0.65□□□□□ -2.31
CD44-215ENST00000525241 NHP2Q9NX24 153 aaKnown RBP0.65□□□□□ -2.31
CD44-215ENST00000525241 SS18L2Q9UHA2 77 aa0.65□□□□□ -2.31
CD44-215ENST00000525241 STOML2Q9UJZ1 356 aa0.65□□□□□ -2.31
CD44-215ENST00000525241 ROCK1Q13464 1354 aa0.65□□□□□ -2.31
CD44-215ENST00000525241 E9PCH4 1651 aa0.65□□□□□ -2.31
CD44-215ENST00000525241 CDH23Q9H251 3354 aa0.65□□□□□ -2.31
CD44-215ENST00000525241 EML5Q05BV3 1969 aa0.65□□□□□ -2.31
CD44-215ENST00000525241 DMXL2Q8TDJ6 3036 aa0.64□□□□□ -2.31
CD44-215ENST00000525241 CACNA1HO95180 2353 aa0.64□□□□□ -2.31
CD44-215ENST00000525241 UHRF1BP1Q6BDS2 1440 aa0.64□□□□□ -2.31
CD44-215ENST00000525241 TRBV6-7A0A0A0MS04 114 aa0.64□□□□□ -2.31
CD44-215ENST00000525241 CRHP06850 196 aa0.64□□□□□ -2.31
CD44-215ENST00000525241 MGST1P10620 155 aaKnown RBP0.64□□□□□ -2.31
CD44-215ENST00000525241 BRS3P32247 399 aa0.64□□□□□ -2.31
CD44-215ENST00000525241 RHOBP62745 196 aa0.64□□□□□ -2.31
CD44-215ENST00000525241 RNASE10Q5GAN6 216 aaKnown RBP0.64□□□□□ -2.31
CD44-215ENST00000525241 LYRM7Q5U5X0 104 aa0.64□□□□□ -2.31
CD44-215ENST00000525241 TMED4Q7Z7H5 227 aa0.64□□□□□ -2.31
CD44-215ENST00000525241 PPTC7Q8NI37 304 aa0.64□□□□□ -2.31
CD44-215ENST00000525241 CEP19Q96LK0 163 aa0.64□□□□□ -2.31
CD44-215ENST00000525241 CARD19Q96LW7 228 aa0.64□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms