RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 MED9Q9NWA0 146 aa13.43□□□□□ -0.26
SQSTM1-209ENST00000504627 RABAC1Q9UI14 185 aa13.43□□□□□ -0.26
SQSTM1-209ENST00000504627 STARD9Q9P2P6 4700 aa13.42□□□□□ -0.26
SQSTM1-209ENST00000504627 TENM2Q9NT68 2774 aa13.42□□□□□ -0.26
SQSTM1-209ENST00000504627 IGHV3OR16-8A0A075B7F1 116 aa13.42□□□□□ -0.26
SQSTM1-209ENST00000504627 LOC102724200A0A096LPH7 203 aaPredicted RBP13.42□□□□□ -0.26
SQSTM1-209ENST00000504627 ZNF207O43670 478 aaKnown RBP13.42□□□□□ -0.26
SQSTM1-209ENST00000504627 NDUFA5Q16718 116 aa13.42□□□□□ -0.26
SQSTM1-209ENST00000504627 PQLC2Q6ZP29 291 aa13.42□□□□□ -0.26
SQSTM1-209ENST00000504627 IL17DQ8TAD2 202 aa13.42□□□□□ -0.26
SQSTM1-209ENST00000504627 UHRF2Q96PU4 802 aa13.42□□□□□ -0.26
SQSTM1-209ENST00000504627 SHANK2-AS3Q9BTD1 123 aa13.42□□□□□ -0.26
SQSTM1-209ENST00000504627 SLC25A39Q9BZJ4 359 aaPredicted RBP13.42□□□□□ -0.26
SQSTM1-209ENST00000504627 HRH4Q9H3N8 390 aa13.42□□□□□ -0.26
SQSTM1-209ENST00000504627 CSMD3Q7Z407 3707 aa13.41□□□□□ -0.26
SQSTM1-209ENST00000504627 LINC00862A6NCI5 91 aa13.41□□□□□ -0.26
SQSTM1-209ENST00000504627 CXorf1O96002 111 aa13.41□□□□□ -0.26
SQSTM1-209ENST00000504627 METTL26Q96S19 204 aa13.41□□□□□ -0.26
SQSTM1-209ENST00000504627 PFDN2Q9UHV9 154 aa13.41□□□□□ -0.26
SQSTM1-209ENST00000504627 RYR2Q92736 4967 aa13.41□□□□□ -0.26
SQSTM1-209ENST00000504627 SACSQ9NZJ4 4579 aa13.4□□□□□ -0.26
SQSTM1-209ENST00000504627 K7EMT4 169 aa13.4□□□□□ -0.26
SQSTM1-209ENST00000504627 TSPAN4O14817 238 aa13.4□□□□□ -0.26
SQSTM1-209ENST00000504627 ARL14EPLP0DKL9 152 aa13.4□□□□□ -0.26
SQSTM1-209ENST00000504627 STXBP6Q8NFX7 210 aa13.4□□□□□ -0.26
SQSTM1-209ENST00000504627 FAM167A-AS1Q96KT0 104 aa13.4□□□□□ -0.26
SQSTM1-209ENST00000504627 LCE6AA0A183 80 aa13.39□□□□□ -0.27
SQSTM1-209ENST00000504627 HMGB3O15347 200 aaKnown RBP13.39□□□□□ -0.27
SQSTM1-209ENST00000504627 PPT1P50897 306 aa13.39□□□□□ -0.27
SQSTM1-209ENST00000504627 FGF8P55075 233 aaPredicted RBP13.39□□□□□ -0.27
SQSTM1-209ENST00000504627 MORN5Q5VZ52 161 aa13.39□□□□□ -0.27
SQSTM1-209ENST00000504627 SCRT1Q9BWW7 348 aa13.39□□□□□ -0.27
SQSTM1-209ENST00000504627 SLC25A2Q9BXI2 301 aa13.39□□□□□ -0.27
SQSTM1-209ENST00000504627 A0A1B0GV50 99 aa13.38□□□□□ -0.27
SQSTM1-209ENST00000504627 OR4C46A6NHA9 309 aa13.38□□□□□ -0.27
SQSTM1-209ENST00000504627 OR7C2O60412 319 aa13.38□□□□□ -0.27
SQSTM1-209ENST00000504627 EIF3GO75821 320 aaKnown RBP eCLIP13.38□□□□□ -0.27
SQSTM1-209ENST00000504627 CRYBB3P26998 211 aa13.38□□□□□ -0.27
SQSTM1-209ENST00000504627 PSMB3P49720 205 aa13.38□□□□□ -0.27
SQSTM1-209ENST00000504627 PMS2P11Q13670 270 aa13.38□□□□□ -0.27
SQSTM1-209ENST00000504627 TMEM14CQ9P0S9 112 aa13.38□□□□□ -0.27
SQSTM1-209ENST00000504627 ZNF98A6NK75 572 aa13.37□□□□□ -0.27
SQSTM1-209ENST00000504627 GCHFRP30047 84 aa13.37□□□□□ -0.27
SQSTM1-209ENST00000504627 COMMD7Q86VX2 200 aa13.37□□□□□ -0.27
SQSTM1-209ENST00000504627 NARS2Q96I59 477 aaKnown RBP13.37□□□□□ -0.27
SQSTM1-209ENST00000504627 MANBALQ9NQG1 85 aa13.37□□□□□ -0.27
SQSTM1-209ENST00000504627 TMEM167BQ9NRX6 74 aa13.37□□□□□ -0.27
SQSTM1-209ENST00000504627 SMPXQ9UHP9 88 aa13.37□□□□□ -0.27
SQSTM1-209ENST00000504627 U3KQE9 123 aa13.37□□□□□ -0.27
SQSTM1-209ENST00000504627 IGHV7-4-1A0A0J9YVY3 117 aa13.36□□□□□ -0.27
SQSTM1-209ENST00000504627 IFNA1P01562 189 aa13.36□□□□□ -0.27
SQSTM1-209ENST00000504627 NPPCP23582 126 aa13.36□□□□□ -0.27
SQSTM1-209ENST00000504627 TAGLN2P37802 199 aaKnown RBP13.36□□□□□ -0.27
SQSTM1-209ENST00000504627 APOC4P55056 127 aa13.36□□□□□ -0.27
SQSTM1-209ENST00000504627 UBE2L3P68036 154 aaKnown RBP13.36□□□□□ -0.27
SQSTM1-209ENST00000504627 C1orf194Q5T5A4 169 aa13.36□□□□□ -0.27
SQSTM1-209ENST00000504627 IQCF2Q8IXL9 164 aa13.36□□□□□ -0.27
SQSTM1-209ENST00000504627 ZNF503Q96F45 646 aa13.36□□□□□ -0.27
SQSTM1-209ENST00000504627 LYSTQ99698 3801 aa13.36□□□□□ -0.27
SQSTM1-209ENST00000504627 PAXXQ9BUH6 204 aa13.36□□□□□ -0.27
SQSTM1-209ENST00000504627 RHPN1-AS1Q9BWJ2 59 aa13.36□□□□□ -0.27
SQSTM1-209ENST00000504627 ARL2-SNX15V9GYD0 113 aa13.36□□□□□ -0.27
SQSTM1-209ENST00000504627 IGHV3-49A0A0A0MS15 119 aa13.35□□□□□ -0.27
SQSTM1-209ENST00000504627 TRAV5A0A0B4J249 113 aa13.35□□□□□ -0.27
SQSTM1-209ENST00000504627 RAB19A4D1S5 217 aa13.35□□□□□ -0.27
SQSTM1-209ENST00000504627 RPL7P18124 248 aaKnown RBP13.35□□□□□ -0.27
SQSTM1-209ENST00000504627 BMI1P35226 326 aa13.35□□□□□ -0.27
SQSTM1-209ENST00000504627 BPIFA4PQ86YQ2 179 aa13.35□□□□□ -0.27
SQSTM1-209ENST00000504627 FAM210AQ96ND0 272 aa13.35□□□□□ -0.27
SQSTM1-209ENST00000504627 GPR82Q96P67 336 aa13.35□□□□□ -0.27
SQSTM1-209ENST00000504627 OVOL2Q9BRP0 275 aa13.35□□□□□ -0.27
SQSTM1-209ENST00000504627 OR51M1Q9H341 326 aa13.35□□□□□ -0.27
SQSTM1-209ENST00000504627 IGKV3-7A0A075B6H7 116 aa13.34□□□□□ -0.27
SQSTM1-209ENST00000504627 A0A1W2PS18 150 aa13.34□□□□□ -0.27
SQSTM1-209ENST00000504627 CHEK1O14757 476 aa13.34□□□□□ -0.27
SQSTM1-209ENST00000504627 BUB3O43684 328 aa13.34□□□□□ -0.27
SQSTM1-209ENST00000504627 BCL2P10415 239 aa13.34□□□□□ -0.27
SQSTM1-209ENST00000504627 TFPI2P48307 235 aa13.34□□□□□ -0.27
SQSTM1-209ENST00000504627 CCL20P78556 96 aa13.34□□□□□ -0.27
SQSTM1-209ENST00000504627 ODF3L2Q3SX64 289 aa13.34□□□□□ -0.27
SQSTM1-209ENST00000504627 LEMD1Q68G75 181 aa13.34□□□□□ -0.27
SQSTM1-209ENST00000504627 SUN5Q8TC36 379 aa13.34□□□□□ -0.27
SQSTM1-209ENST00000504627 TMEM231Q9H6L2 316 aa13.34□□□□□ -0.27
SQSTM1-209ENST00000504627 GNG13Q9P2W3 67 aa13.34□□□□□ -0.27
SQSTM1-209ENST00000504627 IGHV3OR16-13A0A075B7E8 117 aa13.33□□□□□ -0.28
SQSTM1-209ENST00000504627 IGHV3-74A0A0B4J1X5 117 aa13.33□□□□□ -0.28
SQSTM1-209ENST00000504627 EIF4E3Q8N5X7 224 aaKnown RBP13.33□□□□□ -0.28
SQSTM1-209ENST00000504627 FXYD5Q96DB9 178 aa13.33□□□□□ -0.28
SQSTM1-209ENST00000504627 GRAMD2BQ96HH9 432 aa13.33□□□□□ -0.28
SQSTM1-209ENST00000504627 TMPRSS5Q9H3S3 457 aa13.33□□□□□ -0.28
SQSTM1-209ENST00000504627 UBE2CO00762 179 aa13.32□□□□□ -0.28
SQSTM1-209ENST00000504627 MRPS12O15235 138 aaKnown RBP13.32□□□□□ -0.28
SQSTM1-209ENST00000504627 OR10J4P0C629 311 aa13.32□□□□□ -0.28
SQSTM1-209ENST00000504627 PYYP10082 97 aa13.32□□□□□ -0.28
SQSTM1-209ENST00000504627 HIST1H1EP10412 219 aaKnown RBP13.32□□□□□ -0.28
SQSTM1-209ENST00000504627 RPL35AP18077 110 aaKnown RBP13.32□□□□□ -0.28
SQSTM1-209ENST00000504627 CMC4P56277 68 aaPredicted RBP13.32□□□□□ -0.28
SQSTM1-209ENST00000504627 PAFAH1B2P68402 229 aa13.32□□□□□ -0.28
SQSTM1-209ENST00000504627 GUK1Q16774 197 aa13.32□□□□□ -0.28
SQSTM1-209ENST00000504627 TOR2AQ5JU69 321 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 195.7 ms