RNA–Protein interactions for RNA: ENST00000495010.5

VARS-228, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 1,007 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-228ENST00000495010 GAGE12GP0CL81 117 aa9.86□□□□□ -0.83
VARS-228ENST00000495010 GAGE12IP0CL82 117 aa9.86□□□□□ -0.83
VARS-228ENST00000495010 CXCL3P19876 107 aa9.86□□□□□ -0.83
VARS-228ENST00000495010 CTF1Q16619 201 aa9.86□□□□□ -0.83
VARS-228ENST00000495010 SPANXN5Q5MJ07 72 aa9.86□□□□□ -0.83
VARS-228ENST00000495010 RPUSD4Q96CM3 377 aaKnown RBP9.86□□□□□ -0.83
VARS-228ENST00000495010 SHANK2-AS3Q9BTD1 123 aa9.86□□□□□ -0.83
VARS-228ENST00000495010 H3BNG1 76 aa9.85□□□□□ -0.83
VARS-228ENST00000495010 SLC25A6P12236 298 aa9.85□□□□□ -0.83
VARS-228ENST00000495010 ANXA7P20073 488 aaKnown RBP9.85□□□□□ -0.83
VARS-228ENST00000495010 CYP2G1PQ6ZSU1 146 aa9.85□□□□□ -0.83
VARS-228ENST00000495010 TMED4Q7Z7H5 227 aa9.85□□□□□ -0.83
VARS-228ENST00000495010 FRZBQ92765 325 aa9.85□□□□□ -0.83
VARS-228ENST00000495010 C20orf144Q9BQM9 153 aa9.85□□□□□ -0.83
VARS-228ENST00000495010 RNF24Q9Y225 148 aa9.85□□□□□ -0.83
VARS-228ENST00000495010 STRAPQ9Y3F4 350 aaKnown RBP9.85□□□□□ -0.83
VARS-228ENST00000495010 DNAH5Q8TE73 4624 aa9.85□□□□□ -0.83
VARS-228ENST00000495010 APOBP04114 4563 aaKnown RBP9.85□□□□□ -0.83
VARS-228ENST00000495010 A0A087X0K7 114 aa9.84□□□□□ -0.83
VARS-228ENST00000495010 PRSS46E5RG02 174 aa9.84□□□□□ -0.83
VARS-228ENST00000495010 PRB4P10163 310 aaPredicted RBP9.84□□□□□ -0.83
VARS-228ENST00000495010 HOXA5P20719 270 aa9.84□□□□□ -0.83
VARS-228ENST00000495010 VAMP1P23763 118 aa9.84□□□□□ -0.83
VARS-228ENST00000495010 LINC00315P59091 139 aa9.84□□□□□ -0.83
VARS-228ENST00000495010 ACOT7LQ6ZUV0 252 aa9.84□□□□□ -0.83
VARS-228ENST00000495010 LYPD1Q8N2G4 141 aa9.84□□□□□ -0.83
VARS-228ENST00000495010 H3BP45 60 aa9.83□□□□□ -0.84
VARS-228ENST00000495010 IFNA5P01569 189 aa9.83□□□□□ -0.84
VARS-228ENST00000495010 LINC00869P0C866 280 aa9.83□□□□□ -0.84
VARS-228ENST00000495010 ERVFC1-1P60608 527 aa9.83□□□□□ -0.84
VARS-228ENST00000495010 TMEM128Q5BJH2 165 aa9.83□□□□□ -0.84
VARS-228ENST00000495010 CCDC190Q86UF4 302 aa9.83□□□□□ -0.84
VARS-228ENST00000495010 LINC00612Q8N6U2 182 aa9.83□□□□□ -0.84
VARS-228ENST00000495010 RSL24D1Q9UHA3 163 aaKnown RBP9.83□□□□□ -0.84
VARS-228ENST00000495010 SIVA1O15304 175 aa9.82□□□□□ -0.84
VARS-228ENST00000495010 FAUP35544 74 aaKnown RBP9.82□□□□□ -0.84
VARS-228ENST00000495010 SELENOTP62341 195 aa9.82□□□□□ -0.84
VARS-228ENST00000495010 Q5VSD8 79 aa9.82□□□□□ -0.84
VARS-228ENST00000495010 CDPF1Q6NVV7 123 aa9.82□□□□□ -0.84
VARS-228ENST00000495010 J3KRW8 73 aa9.81□□□□□ -0.84
VARS-228ENST00000495010 CXCL2P19875 107 aa9.81□□□□□ -0.84
VARS-228ENST00000495010 PLP1P60201 277 aa9.81□□□□□ -0.84
VARS-228ENST00000495010 GFI1BQ5VTD9 330 aa9.81□□□□□ -0.84
VARS-228ENST00000495010 LCN15Q6UWW0 184 aa9.81□□□□□ -0.84
VARS-228ENST00000495010 LRTM2Q8N967 370 aa9.81□□□□□ -0.84
VARS-228ENST00000495010 SLC50A1Q9BRV3 221 aa9.81□□□□□ -0.84
VARS-228ENST00000495010 PARD6GQ9BYG4 376 aaPredicted RBP9.81□□□□□ -0.84
VARS-228ENST00000495010 ARL6Q9H0F7 186 aa9.81□□□□□ -0.84
VARS-228ENST00000495010 TMPRSS5Q9H3S3 457 aa9.81□□□□□ -0.84
VARS-228ENST00000495010 TRGV2A0A075B6R0 118 aa9.8□□□□□ -0.84
VARS-228ENST00000495010 PMS2P5A8MQ11 134 aa9.8□□□□□ -0.84
VARS-228ENST00000495010 HOXB5P09067 269 aa9.8□□□□□ -0.84
VARS-228ENST00000495010 KIR3DS1Q14943 382 aa9.8□□□□□ -0.84
VARS-228ENST00000495010 ARV1Q9H2C2 271 aa9.8□□□□□ -0.84
VARS-228ENST00000495010 PSENENQ9NZ42 101 aa9.8□□□□□ -0.84
VARS-228ENST00000495010 A0A096LPF7 62 aa9.79□□□□□ -0.84
VARS-228ENST00000495010 FUSP35637 526 aaKnown RBP eCLIP9.79□□□□□ -0.84
VARS-228ENST00000495010 LEPP41159 167 aa9.79□□□□□ -0.84
VARS-228ENST00000495010 XGP55808 180 aa9.79□□□□□ -0.84
VARS-228ENST00000495010 ZNF331Q9NQX6 463 aaPredicted RBP9.79□□□□□ -0.84
VARS-228ENST00000495010 DMBT1Q9UGM3 2413 aaPredicted RBP9.79□□□□□ -0.84
VARS-228ENST00000495010 TRAV12-3A0A0B4J271 114 aa9.78□□□□□ -0.84
VARS-228ENST00000495010 SFT2D2O95562 160 aa9.78□□□□□ -0.84
VARS-228ENST00000495010 SNRPCP09234 159 aaKnown RBP9.78□□□□□ -0.84
VARS-228ENST00000495010 AP3S2P59780 193 aa9.78□□□□□ -0.84
VARS-228ENST00000495010 RRAS2P62070 204 aaPredicted RBP9.78□□□□□ -0.84
VARS-228ENST00000495010 DAZ2Q13117 558 aaKnown RBP9.78□□□□□ -0.84
VARS-228ENST00000495010 SPCS2Q15005 226 aa9.78□□□□□ -0.84
VARS-228ENST00000495010 PXDC1Q5TGL8 231 aa9.78□□□□□ -0.84
VARS-228ENST00000495010 Q6ZRN7 208 aaPredicted RBP9.78□□□□□ -0.84
VARS-228ENST00000495010 Q6ZTI0 123 aa9.78□□□□□ -0.84
VARS-228ENST00000495010 NFE4Q86UQ8 179 aa9.78□□□□□ -0.84
VARS-228ENST00000495010 BPIFA4PQ86YQ2 179 aa9.78□□□□□ -0.84
VARS-228ENST00000495010 PYGO2Q9BRQ0 406 aa9.78□□□□□ -0.84
VARS-228ENST00000495010 NPVFQ9HCQ7 196 aa9.78□□□□□ -0.84
VARS-228ENST00000495010 FABP12A6NFH5 140 aa9.77□□□□□ -0.85
VARS-228ENST00000495010 GOSR2O14653 212 aa9.77□□□□□ -0.85
VARS-228ENST00000495010 NXPH4O95158 308 aa9.77□□□□□ -0.85
VARS-228ENST00000495010 POLR2GP62487 172 aaKnown RBP eCLIP9.77□□□□□ -0.85
VARS-228ENST00000495010 TEPPQ6URK8 271 aa9.77□□□□□ -0.85
VARS-228ENST00000495010 PATE2Q6UY27 113 aa9.77□□□□□ -0.85
VARS-228ENST00000495010 LINC00305Q7Z4B0 112 aa9.77□□□□□ -0.85
VARS-228ENST00000495010 VSIG2Q96IQ7 327 aa9.77□□□□□ -0.85
VARS-228ENST00000495010 MGAT4CQ9UBM8 478 aa9.77□□□□□ -0.85
VARS-228ENST00000495010 ICOSQ9Y6W8 199 aa9.77□□□□□ -0.85
VARS-228ENST00000495010 HERC1Q15751 4861 aa9.76□□□□□ -0.85
VARS-228ENST00000495010 TRAV9-2A0A087WT02 112 aa9.76□□□□□ -0.85
VARS-228ENST00000495010 PRAC2D3DTV9 90 aa9.76□□□□□ -0.85
VARS-228ENST00000495010 MRPS12O15235 138 aaKnown RBP9.76□□□□□ -0.85
VARS-228ENST00000495010 PPP1R1AQ13522 171 aa9.76□□□□□ -0.85
VARS-228ENST00000495010 TOMM5Q8N4H5 51 aa9.76□□□□□ -0.85
VARS-228ENST00000495010 ZNF680Q8NEM1 530 aa9.76□□□□□ -0.85
VARS-228ENST00000495010 OR10P1Q8NGE3 313 aa9.76□□□□□ -0.85
VARS-228ENST00000495010 MCFD2Q8NI22 146 aa9.76□□□□□ -0.85
VARS-228ENST00000495010 SLC25A21Q9BQT8 299 aaPredicted RBP9.76□□□□□ -0.85
VARS-228ENST00000495010 CCDC59Q9P031 241 aaKnown RBP9.76□□□□□ -0.85
VARS-228ENST00000495010 PXMP4Q9Y6I8 212 aa9.76□□□□□ -0.85
VARS-228ENST00000495010 TRGV1A0A0A0MS02 117 aa9.75□□□□□ -0.85
VARS-228ENST00000495010 FAM229AH3BQW9 127 aa9.75□□□□□ -0.85
VARS-228ENST00000495010 H3BTX0 84 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms