RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 ZNF56Q15929 161 aa4.27□□□□□ -1.73
SYNE1-220ENST00000471834 LYRM7Q5U5X0 104 aa4.27□□□□□ -1.73
SYNE1-220ENST00000471834 SDIM1Q6ZPB5 146 aa4.27□□□□□ -1.73
SYNE1-220ENST00000471834 WFDC12Q8WWY7 111 aa4.27□□□□□ -1.73
SYNE1-220ENST00000471834 PEMTQ9UBM1 199 aa4.27□□□□□ -1.73
SYNE1-220ENST00000471834 SPAG17Q6Q759 2223 aa4.27□□□□□ -1.73
SYNE1-220ENST00000471834 IGHV3-49A0A0A0MS15 119 aa4.27□□□□□ -1.73
SYNE1-220ENST00000471834 PGPA6NDG6 321 aa4.27□□□□□ -1.73
SYNE1-220ENST00000471834 PPP1R17O96001 155 aa4.27□□□□□ -1.73
SYNE1-220ENST00000471834 ZNF833PQ6ZTB9 187 aa4.27□□□□□ -1.73
SYNE1-220ENST00000471834 RNF5Q99942 180 aa4.27□□□□□ -1.73
SYNE1-220ENST00000471834 TMEM160Q9NX00 188 aa4.27□□□□□ -1.73
SYNE1-220ENST00000471834 CABIN1Q9Y6J0 2220 aa4.27□□□□□ -1.73
SYNE1-220ENST00000471834 PCDH15Q96QU1 1955 aa4.27□□□□□ -1.73
SYNE1-220ENST00000471834 IGKV1D-17A0A075B6S4 117 aa4.27□□□□□ -1.73
SYNE1-220ENST00000471834 LGALS3P17931 250 aaKnown RBP4.27□□□□□ -1.73
SYNE1-220ENST00000471834 ATP6V0E2Q8NHE4 81 aa4.27□□□□□ -1.73
SYNE1-220ENST00000471834 PHLDA3Q9Y5J5 127 aa4.27□□□□□ -1.73
SYNE1-220ENST00000471834 ABCA4P78363 2273 aa4.26□□□□□ -1.73
SYNE1-220ENST00000471834 SNAI2O43623 268 aa4.26□□□□□ -1.73
SYNE1-220ENST00000471834 C19orf54Q5BKX5 351 aa4.26□□□□□ -1.73
SYNE1-220ENST00000471834 VSTM2AQ8TAG5 236 aa4.26□□□□□ -1.73
SYNE1-220ENST00000471834 ATP6V0BQ99437 205 aa4.26□□□□□ -1.73
SYNE1-220ENST00000471834 PTPRBP23467 1997 aa4.26□□□□□ -1.73
SYNE1-220ENST00000471834 MEF2CQ06413 473 aaPredicted RBP4.26□□□□□ -1.73
SYNE1-220ENST00000471834 C17orf58Q2M2W7 97 aa4.26□□□□□ -1.73
SYNE1-220ENST00000471834 OR9G1Q8NH87 305 aa4.26□□□□□ -1.73
SYNE1-220ENST00000471834 DEFB104AQ8WTQ1 72 aa4.26□□□□□ -1.73
SYNE1-220ENST00000471834 FOXC2Q99958 501 aa4.26□□□□□ -1.73
SYNE1-220ENST00000471834 CEP192Q8TEP8 1941 aa4.26□□□□□ -1.73
SYNE1-220ENST00000471834 PPIAL4CA0A0B4J2A2 164 aa4.26□□□□□ -1.73
SYNE1-220ENST00000471834 TM4SF5O14894 197 aa4.26□□□□□ -1.73
SYNE1-220ENST00000471834 TCRAP04437 139 aa4.26□□□□□ -1.73
SYNE1-220ENST00000471834 CELA3AP09093 270 aa4.26□□□□□ -1.73
SYNE1-220ENST00000471834 TMEM78Q5T7P6 136 aa4.26□□□□□ -1.73
SYNE1-220ENST00000471834 SPATA31B1PQ5VZV4 182 aa4.26□□□□□ -1.73
SYNE1-220ENST00000471834 ZNF329Q86UD4 541 aa4.26□□□□□ -1.73
SYNE1-220ENST00000471834 DTX2Q86UW9 622 aa4.26□□□□□ -1.73
SYNE1-220ENST00000471834 NUP35Q8NFH5 326 aa4.26□□□□□ -1.73
SYNE1-220ENST00000471834 SRSF12Q8WXF0 261 aaKnown RBP4.26□□□□□ -1.73
SYNE1-220ENST00000471834 MAP1LC3AQ9H492 121 aa4.26□□□□□ -1.73
SYNE1-220ENST00000471834 IGLV2-18A0A075B6J9 118 aa4.26□□□□□ -1.73
SYNE1-220ENST00000471834 MPV17P39210 176 aa4.26□□□□□ -1.73
SYNE1-220ENST00000471834 GLMPQ8WWB7 406 aa4.26□□□□□ -1.73
SYNE1-220ENST00000471834 C17orf77Q96MU5 243 aa4.26□□□□□ -1.73
SYNE1-220ENST00000471834 TRGV9Q99603 122 aa4.26□□□□□ -1.73
SYNE1-220ENST00000471834 WNT10AQ9GZT5 417 aa4.26□□□□□ -1.73
SYNE1-220ENST00000471834 C9orf118A6NHY6 69 aa4.26□□□□□ -1.73
SYNE1-220ENST00000471834 SLC17A3O00476 420 aa4.26□□□□□ -1.73
SYNE1-220ENST00000471834 FAM201AQ5SY85 155 aa4.26□□□□□ -1.73
SYNE1-220ENST00000471834 LINC00322Q6ZN03 302 aaPredicted RBP4.26□□□□□ -1.73
SYNE1-220ENST00000471834 KLF14Q8TD94 323 aaPredicted RBP4.26□□□□□ -1.73
SYNE1-220ENST00000471834 PPDPFQ9H3Y8 114 aa4.26□□□□□ -1.73
SYNE1-220ENST00000471834 GPR183P32249 361 aa4.25□□□□□ -1.73
SYNE1-220ENST00000471834 MSMPQ1L6U9 139 aa4.25□□□□□ -1.73
SYNE1-220ENST00000471834 PRR31Q5SQ13 230 aa4.25□□□□□ -1.73
SYNE1-220ENST00000471834 Q6ZT83 130 aa4.25□□□□□ -1.73
SYNE1-220ENST00000471834 NUDT10Q8NFP7 164 aa4.25□□□□□ -1.73
SYNE1-220ENST00000471834 NUDT11Q96G61 164 aa4.25□□□□□ -1.73
SYNE1-220ENST00000471834 SSBP3Q9BWW4 388 aaPredicted RBP4.25□□□□□ -1.73
SYNE1-220ENST00000471834 CNTRLQ7Z7A1 2325 aa4.25□□□□□ -1.73
SYNE1-220ENST00000471834 IGHV3-35A0A0C4DH35 117 aa4.25□□□□□ -1.73
SYNE1-220ENST00000471834 PINLYPA6NC86 204 aa4.25□□□□□ -1.73
SYNE1-220ENST00000471834 CEACAM4O75871 244 aa4.25□□□□□ -1.73
SYNE1-220ENST00000471834 MFAP2P55001 183 aa4.25□□□□□ -1.73
SYNE1-220ENST00000471834 C18orf15Q96N68 181 aa4.25□□□□□ -1.73
SYNE1-220ENST00000471834 TPSG1Q9NRR2 321 aa4.25□□□□□ -1.73
SYNE1-220ENST00000471834 RALGAPA1Q6GYQ0 2036 aa4.25□□□□□ -1.73
SYNE1-220ENST00000471834 IGHV1-24A0A0C4DH33 117 aa4.25□□□□□ -1.73
SYNE1-220ENST00000471834 EVI2AP22794 236 aa4.25□□□□□ -1.73
SYNE1-220ENST00000471834 HSD52Q0P140 79 aa4.25□□□□□ -1.73
SYNE1-220ENST00000471834 PDE6HQ13956 83 aa4.25□□□□□ -1.73
SYNE1-220ENST00000471834 AMMECR1LQ6DCA0 310 aa4.25□□□□□ -1.73
SYNE1-220ENST00000471834 IGF2-ASQ6U949 168 aa4.25□□□□□ -1.73
SYNE1-220ENST00000471834 CEP290O15078 2479 aa4.25□□□□□ -1.73
SYNE1-220ENST00000471834 B9A039 149 aa4.25□□□□□ -1.73
SYNE1-220ENST00000471834 IGLV2-23P01705 113 aa4.25□□□□□ -1.73
SYNE1-220ENST00000471834 UBE2D1P51668 147 aa4.25□□□□□ -1.73
SYNE1-220ENST00000471834 HBBP68871 147 aa4.25□□□□□ -1.73
SYNE1-220ENST00000471834 TP73-AS1Q9UF72 201 aa4.25□□□□□ -1.73
SYNE1-220ENST00000471834 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP4.25□□□□□ -1.73
SYNE1-220ENST00000471834 BRI3O95415 125 aa4.25□□□□□ -1.73
SYNE1-220ENST00000471834 CD7P09564 240 aa4.25□□□□□ -1.73
SYNE1-220ENST00000471834 OXLD1Q5BKU9 147 aa4.25□□□□□ -1.73
SYNE1-220ENST00000471834 C11orf44Q8N8P7 122 aa4.25□□□□□ -1.73
SYNE1-220ENST00000471834 A8MWL6 223 aa4.25□□□□□ -1.73
SYNE1-220ENST00000471834 IGLV1-47P01700 117 aa4.25□□□□□ -1.73
SYNE1-220ENST00000471834 IGHV4-39P01824 125 aa4.25□□□□□ -1.73
SYNE1-220ENST00000471834 C5orf64Q2M2E5 130 aa4.25□□□□□ -1.73
SYNE1-220ENST00000471834 KLF17Q5JT82 389 aaPredicted RBP4.25□□□□□ -1.73
SYNE1-220ENST00000471834 RPRMLQ8N4K4 120 aa4.25□□□□□ -1.73
SYNE1-220ENST00000471834 C15orf53Q8NAA6 179 aa4.25□□□□□ -1.73
SYNE1-220ENST00000471834 LINC00312Q9Y6C7 94 aa4.25□□□□□ -1.73
SYNE1-220ENST00000471834 ASCC3Q8N3C0 2202 aaKnown RBP4.25□□□□□ -1.73
SYNE1-220ENST00000471834 EMP1P54849 157 aa4.24□□□□□ -1.73
SYNE1-220ENST00000471834 GNG5P63218 68 aa4.24□□□□□ -1.73
SYNE1-220ENST00000471834 WT1-ASQ06250 92 aa4.24□□□□□ -1.73
SYNE1-220ENST00000471834 GOLT1AQ6ZVE7 132 aa4.24□□□□□ -1.73
SYNE1-220ENST00000471834 Q86TA4 180 aa4.24□□□□□ -1.73
SYNE1-220ENST00000471834 ZNRF1Q8ND25 227 aa4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms