RNA–Protein interactions for RNA: ENST00000439128.6

NEK1-201, Transcript of NIMA related kinase 1, humanhuman

TSL 1 (best) BASIC

Gene NEK1, Length 5,653 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK1-201ENST00000439128 FAM90A2PQ658T7 463 aa9.69□□□□□ -0.86
NEK1-201ENST00000439128 DLX4Q92988 240 aaPredicted RBP9.69□□□□□ -0.86
NEK1-201ENST00000439128 TSC2P49815 1807 aa9.69□□□□□ -0.86
NEK1-201ENST00000439128 TECTAO75443 2155 aa9.69□□□□□ -0.86
NEK1-201ENST00000439128 HOXD3P31249 432 aaPredicted RBP9.69□□□□□ -0.86
NEK1-201ENST00000439128 ORMDL2Q53FV1 153 aa9.69□□□□□ -0.86
NEK1-201ENST00000439128 Q8NA96 180 aa9.69□□□□□ -0.86
NEK1-201ENST00000439128 FREM3P0C091 2139 aa9.69□□□□□ -0.86
NEK1-201ENST00000439128 TRAV12-2A0A075B6T6 113 aa9.69□□□□□ -0.86
NEK1-201ENST00000439128 INAFM1C9JVW0 142 aa9.69□□□□□ -0.86
NEK1-201ENST00000439128 ZNF561-AS1K7EIQ3 104 aa9.69□□□□□ -0.86
NEK1-201ENST00000439128 C14orf178Q8N769 122 aaPredicted RBP9.69□□□□□ -0.86
NEK1-201ENST00000439128 ITGB1BP1O14713 200 aa9.69□□□□□ -0.86
NEK1-201ENST00000439128 C11orf91Q3C1V1 193 aa9.69□□□□□ -0.86
NEK1-201ENST00000439128 VSIRQ9H7M9 311 aa9.69□□□□□ -0.86
NEK1-201ENST00000439128 KIF26BQ2KJY2 2108 aa9.68□□□□□ -0.86
NEK1-201ENST00000439128 LSM4Q9Y4Z0 139 aaKnown RBP9.68□□□□□ -0.86
NEK1-201ENST00000439128 CENPVL3A0A0U1RRI6 287 aa9.68□□□□□ -0.86
NEK1-201ENST00000439128 C6orf226Q5I0X4 101 aa9.68□□□□□ -0.86
NEK1-201ENST00000439128 PIFOQ8TCI5 191 aa9.68□□□□□ -0.86
NEK1-201ENST00000439128 JPT2Q9H910 190 aa9.68□□□□□ -0.86
NEK1-201ENST00000439128 KAAG1Q9UBP8 84 aa9.68□□□□□ -0.86
NEK1-201ENST00000439128 TRAV13-1A0A0B4J241 112 aa9.68□□□□□ -0.86
NEK1-201ENST00000439128 IGLV2-23P01705 113 aa9.68□□□□□ -0.86
NEK1-201ENST00000439128 TCRAP04437 139 aa9.68□□□□□ -0.86
NEK1-201ENST00000439128 SLURP1P55000 103 aa9.68□□□□□ -0.86
NEK1-201ENST00000439128 NMSQ5H8A3 153 aa9.68□□□□□ -0.86
NEK1-201ENST00000439128 IGF2BP2-AS1Q96M15 143 aa9.68□□□□□ -0.86
NEK1-201ENST00000439128 CTSZQ9UBR2 303 aa9.68□□□□□ -0.86
NEK1-201ENST00000439128 PKDREJQ9NTG1 2253 aa9.68□□□□□ -0.86
NEK1-201ENST00000439128 NUP210Q8TEM1 1887 aaPredicted RBP9.68□□□□□ -0.86
NEK1-201ENST00000439128 MMP23AO75900 390 aa9.67□□□□□ -0.86
NEK1-201ENST00000439128 LIME1Q9H400 295 aa9.67□□□□□ -0.86
NEK1-201ENST00000439128 SHANK2-AS3Q9BTD1 123 aa9.67□□□□□ -0.86
NEK1-201ENST00000439128 IFT22Q9H7X7 185 aa9.67□□□□□ -0.86
NEK1-201ENST00000439128 C19orf84I3L1E1 186 aa9.67□□□□□ -0.86
NEK1-201ENST00000439128 CDK2AP2O75956 126 aa9.67□□□□□ -0.86
NEK1-201ENST00000439128 LHBP01229 141 aa9.67□□□□□ -0.86
NEK1-201ENST00000439128 LGALS1P09382 135 aaKnown RBP9.67□□□□□ -0.86
NEK1-201ENST00000439128 SLC25A34Q6PIV7 304 aa9.67□□□□□ -0.86
NEK1-201ENST00000439128 RPP25LQ8N5L8 163 aaKnown RBP9.67□□□□□ -0.86
NEK1-201ENST00000439128 TPSG1Q9NRR2 321 aa9.67□□□□□ -0.86
NEK1-201ENST00000439128 CLPSL1A2RUU4 121 aa9.67□□□□□ -0.86
NEK1-201ENST00000439128 VWC2Q2TAL6 325 aa9.67□□□□□ -0.86
NEK1-201ENST00000439128 LINC00311Q8N616 119 aa9.67□□□□□ -0.86
NEK1-201ENST00000439128 A0A0J9YY99 117 aa9.66□□□□□ -0.86
NEK1-201ENST00000439128 SRP19P09132 144 aaKnown RBP9.66□□□□□ -0.86
NEK1-201ENST00000439128 ARTNQ5T4W7 220 aa9.66□□□□□ -0.86
NEK1-201ENST00000439128 PUSL1Q8N0Z8 303 aaKnown RBP9.66□□□□□ -0.86
NEK1-201ENST00000439128 ZNF407Q9C0G0 2248 aa9.66□□□□□ -0.86
NEK1-201ENST00000439128 PGPEP1LA6NFU8 196 aa9.66□□□□□ -0.86
NEK1-201ENST00000439128 CACNA1DQ01668 2161 aa9.66□□□□□ -0.86
NEK1-201ENST00000439128 NCR2O95944 276 aa9.66□□□□□ -0.86
NEK1-201ENST00000439128 PPBPP02775 128 aa9.66□□□□□ -0.86
NEK1-201ENST00000439128 LYZL1Q6UWQ5 148 aa9.66□□□□□ -0.86
NEK1-201ENST00000439128 RNF126Q9BV68 326 aa9.66□□□□□ -0.86
NEK1-201ENST00000439128 NOTCH4Q99466 2003 aa9.66□□□□□ -0.86
NEK1-201ENST00000439128 IGHV7-4-1A0A0J9YVY3 117 aa9.66□□□□□ -0.86
NEK1-201ENST00000439128 GHRHP01286 108 aa9.66□□□□□ -0.86
NEK1-201ENST00000439128 CD300EQ496F6 205 aaPredicted RBP9.66□□□□□ -0.86
NEK1-201ENST00000439128 TEX43Q6ZNM6 134 aa9.66□□□□□ -0.86
NEK1-201ENST00000439128 WFDC11Q8NEX6 87 aa9.66□□□□□ -0.86
NEK1-201ENST00000439128 CHTOPQ9Y3Y2 248 aaKnown RBP9.66□□□□□ -0.86
NEK1-201ENST00000439128 PTPRQQ9UMZ3 2332 aa9.65□□□□□ -0.86
NEK1-201ENST00000439128 LDLRAD4O15165 306 aa9.65□□□□□ -0.86
NEK1-201ENST00000439128 FOXE3Q13461 319 aa9.65□□□□□ -0.86
NEK1-201ENST00000439128 SDHCQ99643 169 aaPredicted RBP9.65□□□□□ -0.86
NEK1-201ENST00000439128 WFDC1Q9HC57 220 aa9.65□□□□□ -0.86
NEK1-201ENST00000439128 PCNX2A6NKB5 2137 aa9.65□□□□□ -0.86
NEK1-201ENST00000439128 SPRNQ5BIV9 151 aa9.65□□□□□ -0.87
NEK1-201ENST00000439128 ZNF524Q96C55 264 aa9.65□□□□□ -0.87
NEK1-201ENST00000439128 YLPM1P49750 1951 aaKnown RBP9.65□□□□□ -0.87
NEK1-201ENST00000439128 LOC102724200A0A096LPH7 203 aaPredicted RBP9.65□□□□□ -0.87
NEK1-201ENST00000439128 FABP2P12104 132 aa9.65□□□□□ -0.87
NEK1-201ENST00000439128 YPEL3P61236 119 aaPredicted RBP9.65□□□□□ -0.87
NEK1-201ENST00000439128 PKIAP61925 76 aa9.65□□□□□ -0.87
NEK1-201ENST00000439128 PET117Q6UWS5 81 aa9.65□□□□□ -0.87
NEK1-201ENST00000439128 TRAV8-1A0A0A6YYK1 113 aa9.64□□□□□ -0.87
NEK1-201ENST00000439128 H3BUA1 57 aa9.64□□□□□ -0.87
NEK1-201ENST00000439128 PAX4O43316 350 aa9.64□□□□□ -0.87
NEK1-201ENST00000439128 NCOR1P1Q9H4R4 102 aa9.64□□□□□ -0.87
NEK1-201ENST00000439128 BLCAPP62952 87 aa9.64□□□□□ -0.87
NEK1-201ENST00000439128 PRR31Q5SQ13 230 aa9.64□□□□□ -0.87
NEK1-201ENST00000439128 MPDZO75970 2070 aa9.64□□□□□ -0.87
NEK1-201ENST00000439128 A0A087X0M5 115 aa9.64□□□□□ -0.87
NEK1-201ENST00000439128 A0A1B0GX30 115 aa9.64□□□□□ -0.87
NEK1-201ENST00000439128 SNAI2O43623 268 aa9.64□□□□□ -0.87
NEK1-201ENST00000439128 CDKN1BP46527 198 aa9.64□□□□□ -0.87
NEK1-201ENST00000439128 HAPLN4Q86UW8 402 aa9.64□□□□□ -0.87
NEK1-201ENST00000439128 LYPD1Q8N2G4 141 aa9.64□□□□□ -0.87
NEK1-201ENST00000439128 OCC1Q8TAD7 63 aa9.64□□□□□ -0.87
NEK1-201ENST00000439128 CREBBPQ92793 2442 aa9.64□□□□□ -0.87
NEK1-201ENST00000439128 TRBV25-1A0A075B6N4 114 aa9.64□□□□□ -0.87
NEK1-201ENST00000439128 RNF222A6NCQ9 220 aa9.64□□□□□ -0.87
NEK1-201ENST00000439128 STAG3L3P0CL85 134 aa9.64□□□□□ -0.87
NEK1-201ENST00000439128 LHFPL1Q86WI0 220 aa9.64□□□□□ -0.87
NEK1-201ENST00000439128 CSTL1Q9H114 145 aa9.64□□□□□ -0.87
NEK1-201ENST00000439128 NDUFA4L2Q9NRX3 87 aa9.64□□□□□ -0.87
NEK1-201ENST00000439128 IGHV1OR15-1A0A075B7D0 117 aa9.63□□□□□ -0.87
NEK1-201ENST00000439128 RPL23P62829 140 aaKnown RBP9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 109.8 ms