RNA–Protein interactions for RNA: ENST00000409769.6

CLK1-203, Transcript of CDC like kinase 1, humanhuman

TSL 2 BASIC

Gene CLK1, Length 1,192 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-203ENST00000409769 C9orf85Q96MD7 179 aa3.03□□□□□ -1.92
CLK1-203ENST00000409769 P2RX4Q99571 388 aa3.03□□□□□ -1.92
CLK1-203ENST00000409769 RASL11BQ9BPW5 248 aa3.03□□□□□ -1.92
CLK1-203ENST00000409769 MFFQ9GZY8 342 aa3.03□□□□□ -1.92
CLK1-203ENST00000409769 SLC25A31Q9H0C2 315 aa3.03□□□□□ -1.92
CLK1-203ENST00000409769 ZNF702PQ9H963 129 aa3.03□□□□□ -1.92
CLK1-203ENST00000409769 CYTL1Q9NRR1 136 aa3.03□□□□□ -1.92
CLK1-203ENST00000409769 PSENENQ9NZ42 101 aa3.03□□□□□ -1.92
CLK1-203ENST00000409769 ZNF256Q9Y2P7 627 aaPredicted RBP3.03□□□□□ -1.92
CLK1-203ENST00000409769 HSPB11Q9Y547 144 aa3.03□□□□□ -1.92
CLK1-203ENST00000409769 F11RQ9Y624 299 aaKnown RBP3.03□□□□□ -1.92
CLK1-203ENST00000409769 U3KQ87 197 aa3.03□□□□□ -1.92
CLK1-203ENST00000409769 TEP1Q99973 2627 aaKnown RBP3.02□□□□□ -1.93
CLK1-203ENST00000409769 IGLV11-55A0A075B6I3 123 aa3.02□□□□□ -1.93
CLK1-203ENST00000409769 TRBV9A0A0B4J1U6 114 aa3.02□□□□□ -1.93
CLK1-203ENST00000409769 TRAV41A0A0B4J266 112 aa3.02□□□□□ -1.93
CLK1-203ENST00000409769 IGHV3-35A0A0C4DH35 117 aa3.02□□□□□ -1.93
CLK1-203ENST00000409769 FNDC10F2Z333 226 aa3.02□□□□□ -1.93
CLK1-203ENST00000409769 G3V318 75 aa3.02□□□□□ -1.93
CLK1-203ENST00000409769 H3BUA1 57 aa3.02□□□□□ -1.93
CLK1-203ENST00000409769 I3L2K1 104 aa3.02□□□□□ -1.93
CLK1-203ENST00000409769 SOX15O60248 233 aa3.02□□□□□ -1.93
CLK1-203ENST00000409769 CST7O76096 145 aa3.02□□□□□ -1.93
CLK1-203ENST00000409769 CNIH1O95406 144 aa3.02□□□□□ -1.93
CLK1-203ENST00000409769 METTL15P1P0C7V9 234 aa3.02□□□□□ -1.93
CLK1-203ENST00000409769 APELAP0DMC3 54 aa3.02□□□□□ -1.93
CLK1-203ENST00000409769 S100A11P31949 105 aa3.02□□□□□ -1.93
CLK1-203ENST00000409769 CAV2P51636 162 aa3.02□□□□□ -1.93
CLK1-203ENST00000409769 CXCL6P80162 114 aa3.02□□□□□ -1.93
CLK1-203ENST00000409769 TMEM267Q0VDI3 215 aaPredicted RBP3.02□□□□□ -1.93
CLK1-203ENST00000409769 SPANXN5Q5MJ07 72 aa3.02□□□□□ -1.93
CLK1-203ENST00000409769 UNQ5815/PRO19632Q6UWF5 114 aa3.02□□□□□ -1.93
CLK1-203ENST00000409769 C2orf66Q6UXQ4 117 aa3.02□□□□□ -1.93
CLK1-203ENST00000409769 C19orf35Q6ZS72 473 aa3.02□□□□□ -1.93
CLK1-203ENST00000409769 SLC35E3Q7Z769 313 aa3.02□□□□□ -1.93
CLK1-203ENST00000409769 STX12Q86Y82 276 aa3.02□□□□□ -1.93
CLK1-203ENST00000409769 INO80EQ8NBZ0 244 aaPredicted RBP3.02□□□□□ -1.93
CLK1-203ENST00000409769 LFNGQ8NES3 379 aa3.02□□□□□ -1.93
CLK1-203ENST00000409769 OR10P1Q8NGE3 313 aa3.02□□□□□ -1.93
CLK1-203ENST00000409769 OR1L6Q8NGR2 347 aa3.02□□□□□ -1.93
CLK1-203ENST00000409769 OR5C1Q8NGR4 320 aa3.02□□□□□ -1.93
CLK1-203ENST00000409769 RNASEH2CQ8TDP1 164 aaKnown RBP3.02□□□□□ -1.93
CLK1-203ENST00000409769 GGACTQ9BVM4 153 aa3.02□□□□□ -1.93
CLK1-203ENST00000409769 HINT2Q9BX68 163 aa3.02□□□□□ -1.93
CLK1-203ENST00000409769 PARD6GQ9BYG4 376 aaPredicted RBP3.02□□□□□ -1.93
CLK1-203ENST00000409769 ARV1Q9H2C2 271 aa3.02□□□□□ -1.93
CLK1-203ENST00000409769 WFDC1Q9HC57 220 aa3.02□□□□□ -1.93
CLK1-203ENST00000409769 ENY2Q9NPA8 101 aa3.02□□□□□ -1.93
CLK1-203ENST00000409769 PARP11Q9NR21 331 aa3.02□□□□□ -1.93
CLK1-203ENST00000409769 ANAPC11Q9NYG5 84 aa3.02□□□□□ -1.93
CLK1-203ENST00000409769 STRAPQ9Y3F4 350 aaKnown RBP3.02□□□□□ -1.93
CLK1-203ENST00000409769 MAST4O15021 2626 aa3.02□□□□□ -1.93
CLK1-203ENST00000409769 IGKV1OR2-108A0A075B7D4 117 aa3.01□□□□□ -1.93
CLK1-203ENST00000409769 KANTRA0A1W2PQU2 76 aa3.01□□□□□ -1.93
CLK1-203ENST00000409769 TMEM89A2RUT3 159 aa3.01□□□□□ -1.93
CLK1-203ENST00000409769 K7EIM0 57 aa3.01□□□□□ -1.93
CLK1-203ENST00000409769 CORTO00230 105 aa3.01□□□□□ -1.93
CLK1-203ENST00000409769 TAAR5O14804 337 aa3.01□□□□□ -1.93
CLK1-203ENST00000409769 NDUFA7O95182 113 aa3.01□□□□□ -1.93
CLK1-203ENST00000409769 MT-CO2P00403 227 aa3.01□□□□□ -1.93
CLK1-203ENST00000409769 IFNA10P01566 189 aa3.01□□□□□ -1.93
CLK1-203ENST00000409769 IGHG4P01861 327 aa3.01□□□□□ -1.93
CLK1-203ENST00000409769 PRH1P02810 166 aa3.01□□□□□ -1.93
CLK1-203ENST00000409769 REG1AP05451 166 aa3.01□□□□□ -1.93
CLK1-203ENST00000409769 OR8U8P0C7N1 319 aa3.01□□□□□ -1.93
CLK1-203ENST00000409769 HIST1H1BP16401 226 aaKnown RBP3.01□□□□□ -1.93
CLK1-203ENST00000409769 PSMB8P28062 276 aa3.01□□□□□ -1.93
CLK1-203ENST00000409769 GPX4P36969 197 aaPredicted RBP3.01□□□□□ -1.93
CLK1-203ENST00000409769 NUP62P37198 522 aaPredicted RBP3.01□□□□□ -1.93
CLK1-203ENST00000409769 SNCAP37840 140 aa3.01□□□□□ -1.93
CLK1-203ENST00000409769 AP2S1P53680 142 aaPredicted RBP3.01□□□□□ -1.93
CLK1-203ENST00000409769 SUB1P53999 127 aaKnown RBP eCLIP3.01□□□□□ -1.93
CLK1-203ENST00000409769 RAB11AP62491 216 aa3.01□□□□□ -1.93
CLK1-203ENST00000409769 HBG1P69891 147 aa3.01□□□□□ -1.93
CLK1-203ENST00000409769 HBG2P69892 147 aa3.01□□□□□ -1.93
CLK1-203ENST00000409769 IFITM2Q01629 132 aa3.01□□□□□ -1.93
CLK1-203ENST00000409769 SLC38A11Q08AI6 406 aa3.01□□□□□ -1.93
CLK1-203ENST00000409769 EXOSC2Q13868 293 aaKnown RBP3.01□□□□□ -1.93
CLK1-203ENST00000409769 ZNF266Q14584 549 aa3.01□□□□□ -1.93
CLK1-203ENST00000409769 CLINT1Q14677 625 aa3.01□□□□□ -1.93
CLK1-203ENST00000409769 ATP6V1FQ16864 119 aa3.01□□□□□ -1.93
CLK1-203ENST00000409769 SLC16A13Q7RTY0 426 aa3.01□□□□□ -1.93
CLK1-203ENST00000409769 UBAC2Q8NBM4 344 aa3.01□□□□□ -1.93
CLK1-203ENST00000409769 OR1S2Q8NGQ3 325 aa3.01□□□□□ -1.93
CLK1-203ENST00000409769 STOML3Q8TAV4 291 aa3.01□□□□□ -1.93
CLK1-203ENST00000409769 MYOZ3Q8TDC0 251 aa3.01□□□□□ -1.93
CLK1-203ENST00000409769 ZNF418Q8TF45 676 aaPredicted RBP3.01□□□□□ -1.93
CLK1-203ENST00000409769 CACNG8Q8WXS5 425 aa3.01□□□□□ -1.93
CLK1-203ENST00000409769 PINX1Q96BK5 328 aaKnown RBP3.01□□□□□ -1.93
CLK1-203ENST00000409769 NOL4LQ96MY1 436 aaPredicted RBP3.01□□□□□ -1.93
CLK1-203ENST00000409769 ATP5SQ99766 215 aa3.01□□□□□ -1.93
CLK1-203ENST00000409769 GINS3Q9BRX5 216 aa3.01□□□□□ -1.93
CLK1-203ENST00000409769 TMEM147Q9BVK8 224 aa3.01□□□□□ -1.93
CLK1-203ENST00000409769 SMIM3Q9BZL3 60 aa3.01□□□□□ -1.93
CLK1-203ENST00000409769 WDR61Q9GZS3 305 aaKnown RBP3.01□□□□□ -1.93
CLK1-203ENST00000409769 ARL6Q9H0F7 186 aa3.01□□□□□ -1.93
CLK1-203ENST00000409769 C16orf95Q9H693 158 aa3.01□□□□□ -1.93
CLK1-203ENST00000409769 NRN1Q9NPD7 142 aa3.01□□□□□ -1.93
CLK1-203ENST00000409769 MRPL36Q9P0J6 103 aaKnown RBP3.01□□□□□ -1.93
CLK1-203ENST00000409769 JMJD1CQ15652 2540 aa3□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms