RNA–Protein interactions for RNA: ENST00000391814.5

SHANK1-204, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHANK1, Length 6,622 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-204ENST00000391814 LCTP09848 1927 aa13.13□□□□□ -0.31
SHANK1-204ENST00000391814 ANAPC10Q9UM13 185 aa13.13□□□□□ -0.31
SHANK1-204ENST00000391814 GREB1LQ9C091 1923 aaPredicted RBP13.13□□□□□ -0.31
SHANK1-204ENST00000391814 LGALS9BQ3B8N2 356 aa13.13□□□□□ -0.31
SHANK1-204ENST00000391814 LGALS9CQ6DKI2 356 aa13.13□□□□□ -0.31
SHANK1-204ENST00000391814 C15orf53Q8NAA6 179 aa13.13□□□□□ -0.31
SHANK1-204ENST00000391814 COL4A5P29400 1685 aa13.13□□□□□ -0.31
SHANK1-204ENST00000391814 CLPSP04118 112 aa13.13□□□□□ -0.31
SHANK1-204ENST00000391814 PAX9P55771 341 aa13.13□□□□□ -0.31
SHANK1-204ENST00000391814 PRSS46E5RG02 174 aa13.13□□□□□ -0.31
SHANK1-204ENST00000391814 SP9P0CG40 484 aa13.13□□□□□ -0.31
SHANK1-204ENST00000391814 IGLV3-32A0A0A0MS00 114 aa13.13□□□□□ -0.31
SHANK1-204ENST00000391814 SRRM4A7MD48 611 aaKnown RBP13.13□□□□□ -0.31
SHANK1-204ENST00000391814 C15orf32Q32M92 178 aa13.13□□□□□ -0.31
SHANK1-204ENST00000391814 POLR2AP24928 1970 aaKnown RBP13.12□□□□□ -0.31
SHANK1-204ENST00000391814 RNASE2P10153 161 aaKnown RBP13.12□□□□□ -0.31
SHANK1-204ENST00000391814 CARD19Q96LW7 228 aa13.12□□□□□ -0.31
SHANK1-204ENST00000391814 FOXG1P55316 489 aaPredicted RBP13.12□□□□□ -0.31
SHANK1-204ENST00000391814 OR11H6Q8NGC7 330 aa13.12□□□□□ -0.31
SHANK1-204ENST00000391814 BRCA1P38398 1863 aaKnown RBP13.12□□□□□ -0.31
SHANK1-204ENST00000391814 FAM104BQ5XKR9 115 aa13.12□□□□□ -0.31
SHANK1-204ENST00000391814 SMIM20Q8N5G0 67 aa13.12□□□□□ -0.31
SHANK1-204ENST00000391814 SPRR3Q9UBC9 169 aa13.12□□□□□ -0.31
SHANK1-204ENST00000391814 IGHV1-3A0A0C4DH29 117 aa13.12□□□□□ -0.31
SHANK1-204ENST00000391814 E9PLN8 166 aa13.12□□□□□ -0.31
SHANK1-204ENST00000391814 RS1O15537 224 aa13.12□□□□□ -0.31
SHANK1-204ENST00000391814 HLA-DRB4P13762 266 aa13.12□□□□□ -0.31
SHANK1-204ENST00000391814 C12orf74Q32Q52 190 aa13.12□□□□□ -0.31
SHANK1-204ENST00000391814 HLA-DRB4X5D2U9 266 aa13.12□□□□□ -0.31
SHANK1-204ENST00000391814 A0A087WX48 190 aa13.11□□□□□ -0.31
SHANK1-204ENST00000391814 IGHV1-46P01743 117 aa13.11□□□□□ -0.31
SHANK1-204ENST00000391814 FAM168AQ92567 244 aa13.11□□□□□ -0.31
SHANK1-204ENST00000391814 KLF2Q9Y5W3 355 aaPredicted RBP13.11□□□□□ -0.31
SHANK1-204ENST00000391814 MYOFQ9NZM1 2061 aa13.11□□□□□ -0.31
SHANK1-204ENST00000391814 XIRP1Q702N8 1843 aaKnown RBP13.11□□□□□ -0.31
SHANK1-204ENST00000391814 PRIMA1Q86XR5 153 aa13.11□□□□□ -0.31
SHANK1-204ENST00000391814 TRBV6-6A0A0A6YYG2 114 aa13.11□□□□□ -0.31
SHANK1-204ENST00000391814 KIR2DL5BA0A0G2JN68 375 aa13.11□□□□□ -0.31
SHANK1-204ENST00000391814 KIR2DL5BA0A0G2JPC4 375 aa13.11□□□□□ -0.31
SHANK1-204ENST00000391814 UTF1Q5T230 341 aa13.11□□□□□ -0.31
SHANK1-204ENST00000391814 KIR2DL5AQ8N109 375 aa13.11□□□□□ -0.31
SHANK1-204ENST00000391814 TMEM190Q8WZ59 177 aa13.11□□□□□ -0.31
SHANK1-204ENST00000391814 SIGLEC8Q9NYZ4 499 aa13.11□□□□□ -0.31
SHANK1-204ENST00000391814 NRXN2Q9P2S2 1712 aa13.11□□□□□ -0.31
SHANK1-204ENST00000391814 KLRD1Q13241 179 aa13.11□□□□□ -0.31
SHANK1-204ENST00000391814 MPDZO75970 2070 aa13.11□□□□□ -0.31
SHANK1-204ENST00000391814 ANKRD29Q8N6D5 301 aa13.1□□□□□ -0.31
SHANK1-204ENST00000391814 LYPD1Q8N2G4 141 aa13.1□□□□□ -0.31
SHANK1-204ENST00000391814 DKK2Q9UBU2 259 aa13.1□□□□□ -0.31
SHANK1-204ENST00000391814 NEGR1Q7Z3B1 354 aa13.1□□□□□ -0.31
SHANK1-204ENST00000391814 PTPRDP23468 1912 aa13.1□□□□□ -0.31
SHANK1-204ENST00000391814 K7EN84 100 aa13.1□□□□□ -0.31
SHANK1-204ENST00000391814 RPL35AP18077 110 aaKnown RBP13.1□□□□□ -0.31
SHANK1-204ENST00000391814 IL17RELQ6ZVW7 336 aa13.1□□□□□ -0.31
SHANK1-204ENST00000391814 NEU4Q8WWR8 484 aaPredicted RBP13.1□□□□□ -0.31
SHANK1-204ENST00000391814 MDC1Q14676 2089 aaKnown RBP13.09□□□□□ -0.31
SHANK1-204ENST00000391814 EPOPA6NHQ4 379 aa13.09□□□□□ -0.31
SHANK1-204ENST00000391814 INAFM2P0DMQ5 153 aa13.09□□□□□ -0.31
SHANK1-204ENST00000391814 C1orf159Q96HA4 380 aa13.09□□□□□ -0.31
SHANK1-204ENST00000391814 SH2D6Q7Z4S9 175 aa13.09□□□□□ -0.31
SHANK1-204ENST00000391814 LY6G5BQ8NDX9 201 aa13.09□□□□□ -0.31
SHANK1-204ENST00000391814 SIPA1L1O43166 1804 aa13.09□□□□□ -0.31
SHANK1-204ENST00000391814 WNT2P09544 360 aa13.09□□□□□ -0.31
SHANK1-204ENST00000391814 TMEM141Q96I45 108 aa13.09□□□□□ -0.31
SHANK1-204ENST00000391814 IGHV2-70DA0A0C4DH43 119 aa13.08□□□□□ -0.31
SHANK1-204ENST00000391814 SIVA1O15304 175 aa13.08□□□□□ -0.32
SHANK1-204ENST00000391814 F5P12259 2224 aa13.08□□□□□ -0.32
SHANK1-204ENST00000391814 PRO1854Q9UHT4 67 aa13.08□□□□□ -0.32
SHANK1-204ENST00000391814 TRGV1A0A0A0MS02 117 aa13.08□□□□□ -0.32
SHANK1-204ENST00000391814 TRAV12-1A0A0B4J245 112 aa13.08□□□□□ -0.32
SHANK1-204ENST00000391814 VMO1Q7Z5L0 202 aa13.08□□□□□ -0.32
SHANK1-204ENST00000391814 GGNQ86UU5 652 aa13.08□□□□□ -0.32
SHANK1-204ENST00000391814 FNDC10F2Z333 226 aa13.08□□□□□ -0.32
SHANK1-204ENST00000391814 LINC00477Q96M19 166 aa13.08□□□□□ -0.32
SHANK1-204ENST00000391814 IGHV1-8P0DP01 117 aa13.08□□□□□ -0.32
SHANK1-204ENST00000391814 Q6ZS49 121 aa13.08□□□□□ -0.32
SHANK1-204ENST00000391814 C6orf226Q5I0X4 101 aa13.07□□□□□ -0.32
SHANK1-204ENST00000391814 MRPL35Q9NZE8 188 aaKnown RBP13.07□□□□□ -0.32
SHANK1-204ENST00000391814 TRAV41A0A0B4J266 112 aa13.07□□□□□ -0.32
SHANK1-204ENST00000391814 HS3ST6Q96QI5 342 aa13.07□□□□□ -0.32
SHANK1-204ENST00000391814 ANK1P16157 1881 aa13.07□□□□□ -0.32
SHANK1-204ENST00000391814 C2orf66Q6UXQ4 117 aa13.07□□□□□ -0.32
SHANK1-204ENST00000391814 NTN5Q8WTR8 489 aaPredicted RBP13.07□□□□□ -0.32
SHANK1-204ENST00000391814 IGKV1-6A0A0C4DH72 117 aa13.06□□□□□ -0.32
SHANK1-204ENST00000391814 C1orf43Q9BWL3 253 aa13.06□□□□□ -0.32
SHANK1-204ENST00000391814 TEX48A0A1B0GUV7 120 aa13.06□□□□□ -0.32
SHANK1-204ENST00000391814 FHL1Q13642 323 aa13.06□□□□□ -0.32
SHANK1-204ENST00000391814 MRPL14Q6P1L8 145 aaKnown RBP13.06□□□□□ -0.32
SHANK1-204ENST00000391814 ZC2HC1AQ96GY0 325 aa13.06□□□□□ -0.32
SHANK1-204ENST00000391814 SHANK2-AS3Q9BTD1 123 aa13.06□□□□□ -0.32
SHANK1-204ENST00000391814 PRB2P02812 416 aaPredicted RBP13.06□□□□□ -0.32
SHANK1-204ENST00000391814 CRYBA4P53673 196 aa13.06□□□□□ -0.32
SHANK1-204ENST00000391814 RBMY1FQ15415 496 aaKnown RBP13.06□□□□□ -0.32
SHANK1-204ENST00000391814 TAL2Q16559 108 aa13.06□□□□□ -0.32
SHANK1-204ENST00000391814 TDRG1Q3Y452 100 aa13.06□□□□□ -0.32
SHANK1-204ENST00000391814 CT83Q5H943 113 aa13.06□□□□□ -0.32
SHANK1-204ENST00000391814 DTX2Q86UW9 622 aa13.06□□□□□ -0.32
SHANK1-204ENST00000391814 GAFA1Q96PS6 74 aa13.06□□□□□ -0.32
SHANK1-204ENST00000391814 MYLKQ15746 1914 aa13.06□□□□□ -0.32
SHANK1-204ENST00000391814 SNRNP200O75643 2136 aaKnown RBP13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms