RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 ZFP82Q8N141 532 aa10.3□□□□□ -0.76
HMGB1-202ENST00000339872 FMC1Q96HJ9 113 aa10.3□□□□□ -0.76
HMGB1-202ENST00000339872 FAM210BQ96KR6 192 aa10.3□□□□□ -0.76
HMGB1-202ENST00000339872 KLF12Q9Y4X4 402 aa10.3□□□□□ -0.76
HMGB1-202ENST00000339872 FASNP49327 2511 aaKnown RBP10.3□□□□□ -0.76
HMGB1-202ENST00000339872 A0A1W2PPQ1 181 aa10.29□□□□□ -0.76
HMGB1-202ENST00000339872 TMEM89A2RUT3 159 aa10.29□□□□□ -0.76
HMGB1-202ENST00000339872 NDUFA4O00483 81 aa10.29□□□□□ -0.76
HMGB1-202ENST00000339872 GCGP01275 180 aa10.29□□□□□ -0.76
HMGB1-202ENST00000339872 PRB4P10163 310 aaPredicted RBP10.29□□□□□ -0.76
HMGB1-202ENST00000339872 UNQ9165/PRO28630Q6UXU0 137 aa10.29□□□□□ -0.76
HMGB1-202ENST00000339872 RNASE7Q9H1E1 156 aaKnown RBP10.29□□□□□ -0.76
HMGB1-202ENST00000339872 TRBV24-1A0A075B6N3 115 aa10.29□□□□□ -0.76
HMGB1-202ENST00000339872 TRAV8-1A0A0A6YYK1 113 aa10.29□□□□□ -0.76
HMGB1-202ENST00000339872 C1orf196B1AJZ1 125 aa10.29□□□□□ -0.76
HMGB1-202ENST00000339872 M0R3E3 92 aa10.29□□□□□ -0.76
HMGB1-202ENST00000339872 PSG9Q00887 426 aa10.29□□□□□ -0.76
HMGB1-202ENST00000339872 FAM209BQ5JX69 171 aa10.29□□□□□ -0.76
HMGB1-202ENST00000339872 KCNIP4Q6PIL6 250 aa10.29□□□□□ -0.76
HMGB1-202ENST00000339872 TMEM86BQ8N661 226 aa10.29□□□□□ -0.76
HMGB1-202ENST00000339872 GPR82Q96P67 336 aa10.29□□□□□ -0.76
HMGB1-202ENST00000339872 DNAJC9-AS1A6NH13 148 aa10.28□□□□□ -0.76
HMGB1-202ENST00000339872 ZNF785A8K8V0 405 aa10.28□□□□□ -0.76
HMGB1-202ENST00000339872 GGCTO75223 188 aaKnown RBP10.28□□□□□ -0.76
HMGB1-202ENST00000339872 RPLP1P05386 114 aaKnown RBP10.28□□□□□ -0.76
HMGB1-202ENST00000339872 S100A9P06702 114 aaKnown RBP10.28□□□□□ -0.76
HMGB1-202ENST00000339872 TMEM190Q8WZ59 177 aa10.28□□□□□ -0.76
HMGB1-202ENST00000339872 PEF1Q9UBV8 284 aaKnown RBP10.28□□□□□ -0.76
HMGB1-202ENST00000339872 SONP18583 2426 aaKnown RBP10.28□□□□□ -0.76
HMGB1-202ENST00000339872 LOC105371267A0A1B0GV96 52 aa10.28□□□□□ -0.76
HMGB1-202ENST00000339872 FAM3BP58499 235 aaPredicted RBP10.28□□□□□ -0.76
HMGB1-202ENST00000339872 RAB5BP61020 215 aa10.28□□□□□ -0.76
HMGB1-202ENST00000339872 IBA57Q5T440 356 aaKnown RBP10.28□□□□□ -0.76
HMGB1-202ENST00000339872 C1orf194Q5T5A4 169 aa10.28□□□□□ -0.76
HMGB1-202ENST00000339872 U3KQE9 123 aa10.28□□□□□ -0.76
HMGB1-202ENST00000339872 ZNF320A2RRD8 509 aa10.27□□□□□ -0.77
HMGB1-202ENST00000339872 FOXE3Q13461 319 aa10.27□□□□□ -0.77
HMGB1-202ENST00000339872 PRR27Q6MZM9 219 aa10.27□□□□□ -0.77
HMGB1-202ENST00000339872 Q86TA4 180 aa10.27□□□□□ -0.77
HMGB1-202ENST00000339872 Q8N2B8 174 aa10.27□□□□□ -0.77
HMGB1-202ENST00000339872 V9GYV3 84 aa10.27□□□□□ -0.77
HMGB1-202ENST00000339872 K7EQM0 130 aa10.27□□□□□ -0.77
HMGB1-202ENST00000339872 LTAP01374 205 aa10.27□□□□□ -0.77
HMGB1-202ENST00000339872 FLI1Q01543 452 aaPredicted RBP10.27□□□□□ -0.77
HMGB1-202ENST00000339872 C1QL4Q86Z23 238 aa10.27□□□□□ -0.77
HMGB1-202ENST00000339872 IMMP2LQ96T52 175 aa10.27□□□□□ -0.77
HMGB1-202ENST00000339872 OSTCQ9NRP0 149 aa10.27□□□□□ -0.77
HMGB1-202ENST00000339872 A0A087X0K7 114 aa10.26□□□□□ -0.77
HMGB1-202ENST00000339872 FAM181BA6NEQ2 426 aa10.26□□□□□ -0.77
HMGB1-202ENST00000339872 DIRC3C9JPN6 131 aa10.26□□□□□ -0.77
HMGB1-202ENST00000339872 ZNF253O75346 499 aa10.26□□□□□ -0.77
HMGB1-202ENST00000339872 ELANEP08246 267 aa10.26□□□□□ -0.77
HMGB1-202ENST00000339872 CSN1S1P47710 185 aa10.26□□□□□ -0.77
HMGB1-202ENST00000339872 IGFL4Q6B9Z1 124 aa10.26□□□□□ -0.77
HMGB1-202ENST00000339872 PRNTQ86SH4 94 aa10.26□□□□□ -0.77
HMGB1-202ENST00000339872 SMIM12Q96EX1 92 aa10.26□□□□□ -0.77
HMGB1-202ENST00000339872 PYGO2Q9BRQ0 406 aa10.26□□□□□ -0.77
HMGB1-202ENST00000339872 ZNF331Q9NQX6 463 aaPredicted RBP10.26□□□□□ -0.77
HMGB1-202ENST00000339872 SERTAD4Q9NUC0 356 aa10.26□□□□□ -0.77
HMGB1-202ENST00000339872 IL36BQ9NZH7 164 aa10.26□□□□□ -0.77
HMGB1-202ENST00000339872 IGLV2-11P01706 119 aa10.25□□□□□ -0.77
HMGB1-202ENST00000339872 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.25□□□□□ -0.77
HMGB1-202ENST00000339872 TMEM75Q8N9X5 138 aa10.25□□□□□ -0.77
HMGB1-202ENST00000339872 ACANP16112 2415 aa10.25□□□□□ -0.77
HMGB1-202ENST00000339872 HLA-DMBP28068 263 aa10.25□□□□□ -0.77
HMGB1-202ENST00000339872 FOXL1Q12952 345 aa10.25□□□□□ -0.77
HMGB1-202ENST00000339872 RPEL1Q2QD12 228 aa10.25□□□□□ -0.77
HMGB1-202ENST00000339872 C16orf54Q6UWD8 224 aa10.25□□□□□ -0.77
HMGB1-202ENST00000339872 SMR3AQ99954 134 aa10.25□□□□□ -0.77
HMGB1-202ENST00000339872 MLST8Q9BVC4 326 aa10.25□□□□□ -0.77
HMGB1-202ENST00000339872 ESM1Q9NQ30 184 aa10.25□□□□□ -0.77
HMGB1-202ENST00000339872 PSG3Q16557 428 aa10.24□□□□□ -0.77
HMGB1-202ENST00000339872 ZNF705GA8MUZ8 300 aaPredicted RBP10.24□□□□□ -0.77
HMGB1-202ENST00000339872 MYOZ3Q8TDC0 251 aa10.24□□□□□ -0.77
HMGB1-202ENST00000339872 GLMPQ8WWB7 406 aa10.24□□□□□ -0.77
HMGB1-202ENST00000339872 SLC50A1Q9BRV3 221 aa10.24□□□□□ -0.77
HMGB1-202ENST00000339872 IGKV2-40A0A087WW87 121 aaPredicted RBP10.23□□□□□ -0.77
HMGB1-202ENST00000339872 CHEK1O14757 476 aa10.23□□□□□ -0.77
HMGB1-202ENST00000339872 IGKV2D-40P01614 121 aaPredicted RBP10.23□□□□□ -0.77
HMGB1-202ENST00000339872 TRGC2P03986 189 aa10.23□□□□□ -0.77
HMGB1-202ENST00000339872 LGALS1P09382 135 aaKnown RBP10.23□□□□□ -0.77
HMGB1-202ENST00000339872 FAM106AQ4KMX7 169 aa10.23□□□□□ -0.77
HMGB1-202ENST00000339872 TM4SF20Q53R12 229 aa10.23□□□□□ -0.77
HMGB1-202ENST00000339872 FAM231DQ6ZW35 169 aa10.23□□□□□ -0.77
HMGB1-202ENST00000339872 Q71RC1 249 aaPredicted RBP10.23□□□□□ -0.77
HMGB1-202ENST00000339872 GRAMD2BQ96HH9 432 aa10.23□□□□□ -0.77
HMGB1-202ENST00000339872 ASCL2Q99929 193 aa10.23□□□□□ -0.77
HMGB1-202ENST00000339872 DAZ1Q9NQZ3 744 aaKnown RBP10.23□□□□□ -0.77
HMGB1-202ENST00000339872 PSG8Q9UQ74 426 aa10.23□□□□□ -0.77
HMGB1-202ENST00000339872 MYO9AB2RTY4 2548 aa10.23□□□□□ -0.77
HMGB1-202ENST00000339872 TRBV6-1A0A0K0K1D8 114 aa10.23□□□□□ -0.77
HMGB1-202ENST00000339872 SERTM2A0A1B0GWG4 89 aa10.23□□□□□ -0.77
HMGB1-202ENST00000339872 SCGB2A2Q13296 93 aa10.23□□□□□ -0.77
HMGB1-202ENST00000339872 Q6ZSV7 163 aa10.23□□□□□ -0.77
HMGB1-202ENST00000339872 TMEM183AQ8IXX5 376 aa10.23□□□□□ -0.77
HMGB1-202ENST00000339872 RNF182Q8N6D2 247 aa10.23□□□□□ -0.77
HMGB1-202ENST00000339872 KLHDC1Q8N7A1 406 aa10.23□□□□□ -0.77
HMGB1-202ENST00000339872 RNF152Q8N8N0 203 aa10.23□□□□□ -0.77
HMGB1-202ENST00000339872 NUDT10Q8NFP7 164 aa10.23□□□□□ -0.77
HMGB1-202ENST00000339872 NUDT11Q96G61 164 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms