RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 IGKV1D-13A0A0B4J2D9 117 aa9.34□□□□□ -0.91
PTPN4-201ENST00000263708 IGKV1-13P0DP09 117 aa9.34□□□□□ -0.91
PTPN4-201ENST00000263708 SP7Q8TDD2 431 aaPredicted RBP9.34□□□□□ -0.91
PTPN4-201ENST00000263708 RPL18AQ02543 176 aaKnown RBP9.34□□□□□ -0.91
PTPN4-201ENST00000263708 EFNA4P52798 201 aa9.34□□□□□ -0.91
PTPN4-201ENST00000263708 IFITM2Q01629 132 aa9.34□□□□□ -0.91
PTPN4-201ENST00000263708 LCTP09848 1927 aa9.34□□□□□ -0.91
PTPN4-201ENST00000263708 TGFBR3LH3BV60 316 aa9.34□□□□□ -0.91
PTPN4-201ENST00000263708 TRPT1Q86TN4 253 aaKnown RBP9.34□□□□□ -0.91
PTPN4-201ENST00000263708 IGHV1-46P01743 117 aa9.34□□□□□ -0.91
PTPN4-201ENST00000263708 LIME1Q9H400 295 aa9.34□□□□□ -0.91
PTPN4-201ENST00000263708 IGKV1D-43A0A0B4J1Z2 117 aa9.33□□□□□ -0.92
PTPN4-201ENST00000263708 RBM3P98179 157 aaKnown RBP9.33□□□□□ -0.92
PTPN4-201ENST00000263708 DEFB131AP59861 70 aa9.33□□□□□ -0.92
PTPN4-201ENST00000263708 TRBV6-7A0A0A0MS04 114 aa9.33□□□□□ -0.92
PTPN4-201ENST00000263708 E9PLN8 166 aa9.33□□□□□ -0.92
PTPN4-201ENST00000263708 RPRMLQ8N4K4 120 aa9.33□□□□□ -0.92
PTPN4-201ENST00000263708 KLK9Q9UKQ9 250 aa9.33□□□□□ -0.92
PTPN4-201ENST00000263708 IGHV4-4A0A075B6R2 117 aa9.33□□□□□ -0.92
PTPN4-201ENST00000263708 TIMP3P35625 211 aa9.33□□□□□ -0.92
PTPN4-201ENST00000263708 TNCP24821 2201 aa9.33□□□□□ -0.92
PTPN4-201ENST00000263708 TINCRA0A1B0GVN0 87 aa9.33□□□□□ -0.92
PTPN4-201ENST00000263708 SPTAN1Q13813 2472 aaKnown RBP9.33□□□□□ -0.92
PTPN4-201ENST00000263708 PKDREJQ9NTG1 2253 aa9.33□□□□□ -0.92
PTPN4-201ENST00000263708 MAPK1IP1LQ8NDC0 245 aa9.33□□□□□ -0.92
PTPN4-201ENST00000263708 C10orf55Q5SWW7 151 aa9.33□□□□□ -0.92
PTPN4-201ENST00000263708 NUP35Q8NFH5 326 aa9.32□□□□□ -0.92
PTPN4-201ENST00000263708 CT83Q5H943 113 aa9.32□□□□□ -0.92
PTPN4-201ENST00000263708 IGF2BP2-AS1Q96M15 143 aa9.32□□□□□ -0.92
PTPN4-201ENST00000263708 ANGP03950 147 aaKnown RBP9.32□□□□□ -0.92
PTPN4-201ENST00000263708 IGHV1-8P0DP01 117 aa9.32□□□□□ -0.92
PTPN4-201ENST00000263708 IL17RELQ6ZVW7 336 aa9.32□□□□□ -0.92
PTPN4-201ENST00000263708 GAGE12BA1L429 117 aa9.32□□□□□ -0.92
PTPN4-201ENST00000263708 HIST1H2BKO60814 126 aa9.32□□□□□ -0.92
PTPN4-201ENST00000263708 GAGE7O76087 117 aa9.32□□□□□ -0.92
PTPN4-201ENST00000263708 HIST1H2BJP06899 126 aa9.32□□□□□ -0.92
PTPN4-201ENST00000263708 GAGE12FP0CL80 117 aa9.32□□□□□ -0.92
PTPN4-201ENST00000263708 GAGE12GP0CL81 117 aa9.32□□□□□ -0.92
PTPN4-201ENST00000263708 GAGE12IP0CL82 117 aa9.32□□□□□ -0.92
PTPN4-201ENST00000263708 HIST1H2BOP23527 126 aa9.32□□□□□ -0.92
PTPN4-201ENST00000263708 HIST1H2BBP33778 126 aa9.32□□□□□ -0.92
PTPN4-201ENST00000263708 HIST1H2BDP58876 126 aa9.32□□□□□ -0.92
PTPN4-201ENST00000263708 HIST1H2BCP62807 126 aa9.32□□□□□ -0.92
PTPN4-201ENST00000263708 HIST2H2BEQ16778 126 aa9.32□□□□□ -0.92
PTPN4-201ENST00000263708 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.32□□□□□ -0.92
PTPN4-201ENST00000263708 SPATA31B1PQ5VZV4 182 aa9.32□□□□□ -0.92
PTPN4-201ENST00000263708 C9orf139Q6ZV77 190 aa9.32□□□□□ -0.92
PTPN4-201ENST00000263708 HIST1H2BHQ93079 126 aa9.32□□□□□ -0.92
PTPN4-201ENST00000263708 HIST1H2BNQ99877 126 aa9.32□□□□□ -0.92
PTPN4-201ENST00000263708 HIST1H2BMQ99879 126 aa9.32□□□□□ -0.92
PTPN4-201ENST00000263708 IGKV2D-24A0A075B6R9 120 aa9.32□□□□□ -0.92
PTPN4-201ENST00000263708 RHPN1-AS1Q9BWJ2 59 aa9.32□□□□□ -0.92
PTPN4-201ENST00000263708 IGKV1-5P01602 117 aa9.32□□□□□ -0.92
PTPN4-201ENST00000263708 LINC01590Q5TEZ4 76 aa9.32□□□□□ -0.92
PTPN4-201ENST00000263708 SVIPQ8NHG7 77 aa9.32□□□□□ -0.92
PTPN4-201ENST00000263708 PAX9P55771 341 aa9.32□□□□□ -0.92
PTPN4-201ENST00000263708 SRSF3P84103 164 aaKnown RBP9.32□□□□□ -0.92
PTPN4-201ENST00000263708 SPINK13Q1W4C9 94 aa9.32□□□□□ -0.92
PTPN4-201ENST00000263708 MINOS1Q5TGZ0 78 aa9.31□□□□□ -0.92
PTPN4-201ENST00000263708 MINOS1-NBL1R4GNA1 71 aa9.31□□□□□ -0.92
PTPN4-201ENST00000263708 TANC2Q9HCD6 1990 aa9.31□□□□□ -0.92
PTPN4-201ENST00000263708 IGHV3-38A0A0C4DH36 116 aa9.31□□□□□ -0.92
PTPN4-201ENST00000263708 RNF223E7ERA6 249 aa9.31□□□□□ -0.92
PTPN4-201ENST00000263708 MCRIP2Q9BUT9 160 aaKnown RBP9.31□□□□□ -0.92
PTPN4-201ENST00000263708 RIF1Q5UIP0 2472 aaKnown RBP9.31□□□□□ -0.92
PTPN4-201ENST00000263708 IGHV4-28A0A0C4DH34 117 aa9.31□□□□□ -0.92
PTPN4-201ENST00000263708 Q9HAA7 133 aa9.31□□□□□ -0.92
PTPN4-201ENST00000263708 IGKV1OR2-108A0A075B7D4 117 aa9.31□□□□□ -0.92
PTPN4-201ENST00000263708 ZNF124Q15973 351 aa9.31□□□□□ -0.92
PTPN4-201ENST00000263708 TIMM17AQ99595 171 aa9.31□□□□□ -0.92
PTPN4-201ENST00000263708 TP53TG1Q9Y2A0 90 aa9.31□□□□□ -0.92
PTPN4-201ENST00000263708 DAZ1Q9NQZ3 744 aaKnown RBP9.31□□□□□ -0.92
PTPN4-201ENST00000263708 WFDC9Q8NEX5 89 aa9.31□□□□□ -0.92
PTPN4-201ENST00000263708 TRGV9Q99603 122 aa9.31□□□□□ -0.92
PTPN4-201ENST00000263708 TMEM243Q9BU79 118 aa9.31□□□□□ -0.92
PTPN4-201ENST00000263708 SHANK1Q9Y566 2161 aa9.31□□□□□ -0.92
PTPN4-201ENST00000263708 RS1O15537 224 aa9.3□□□□□ -0.92
PTPN4-201ENST00000263708 C8orf31Q8N9H6 132 aa9.3□□□□□ -0.92
PTPN4-201ENST00000263708 LINC01619G3V211 115 aa9.3□□□□□ -0.92
PTPN4-201ENST00000263708 I3L3M4 83 aa9.3□□□□□ -0.92
PTPN4-201ENST00000263708 FOXF2Q12947 444 aa9.3□□□□□ -0.92
PTPN4-201ENST00000263708 VSIRQ9H7M9 311 aa9.3□□□□□ -0.92
PTPN4-201ENST00000263708 C14orf132Q9NPU4 83 aa9.3□□□□□ -0.92
PTPN4-201ENST00000263708 RNASE2P10153 161 aaKnown RBP9.3□□□□□ -0.92
PTPN4-201ENST00000263708 C4orf48Q5BLP8 95 aa9.3□□□□□ -0.92
PTPN4-201ENST00000263708 AMN1Q8IY45 258 aa9.3□□□□□ -0.92
PTPN4-201ENST00000263708 WBP1Q96G27 269 aa9.3□□□□□ -0.92
PTPN4-201ENST00000263708 CRYGCP07315 174 aa9.29□□□□□ -0.92
PTPN4-201ENST00000263708 A0A1B0GWJ7 208 aa9.29□□□□□ -0.92
PTPN4-201ENST00000263708 SEC61GP60059 68 aa9.29□□□□□ -0.92
PTPN4-201ENST00000263708 IFITM1P13164 125 aa9.29□□□□□ -0.92
PTPN4-201ENST00000263708 C5orf64Q2M2E5 130 aa9.29□□□□□ -0.92
PTPN4-201ENST00000263708 RUSC1-AS1Q66K80 236 aa9.29□□□□□ -0.92
PTPN4-201ENST00000263708 BUB1B-PAK6H3BSN5 160 aa9.29□□□□□ -0.92
PTPN4-201ENST00000263708 ATP6V0BQ99437 205 aa9.29□□□□□ -0.92
PTPN4-201ENST00000263708 ARHGAP21Q5T5U3 1957 aa9.29□□□□□ -0.92
PTPN4-201ENST00000263708 SHISA9B4DS77 424 aa9.29□□□□□ -0.92
PTPN4-201ENST00000263708 IGFBP3P17936 291 aaPredicted RBP9.29□□□□□ -0.92
PTPN4-201ENST00000263708 TMEM242Q9NWH2 141 aa9.29□□□□□ -0.92
PTPN4-201ENST00000263708 NEGR1Q7Z3B1 354 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms