RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 RBPMS2Q6ZRY4 209 aaKnown RBP16.81■□□□□ 0.28
TRIM28-201ENST00000253024 RNF125Q96EQ8 232 aa16.81■□□□□ 0.28
TRIM28-201ENST00000253024 LEPROTL1O95214 131 aa16.8■□□□□ 0.28
TRIM28-201ENST00000253024 HLA-DRB1P01911 266 aa16.8■□□□□ 0.28
TRIM28-201ENST00000253024 TMEM75Q8N9X5 138 aa16.8■□□□□ 0.28
TRIM28-201ENST00000253024 OR4F17Q8NGA8 305 aa16.8■□□□□ 0.28
TRIM28-201ENST00000253024 KLF12Q9Y4X4 402 aa16.8■□□□□ 0.28
TRIM28-201ENST00000253024 C19orf71A6NCJ1 209 aa16.8■□□□□ 0.28
TRIM28-201ENST00000253024 TSPOP30536 169 aa16.8■□□□□ 0.28
TRIM28-201ENST00000253024 FAM71F2Q6NXP2 309 aa16.8■□□□□ 0.28
TRIM28-201ENST00000253024 TMEM11P17152 192 aa16.79■□□□□ 0.28
TRIM28-201ENST00000253024 TMEM213A2RRL7 107 aa16.79■□□□□ 0.28
TRIM28-201ENST00000253024 LIPFP07098 398 aa16.79■□□□□ 0.28
TRIM28-201ENST00000253024 COL5A1-AS1Q5SY13 56 aa16.79■□□□□ 0.28
TRIM28-201ENST00000253024 BPIFA4PQ86YQ2 179 aa16.79■□□□□ 0.28
TRIM28-201ENST00000253024 ZNF491Q8N8L2 437 aa16.79■□□□□ 0.28
TRIM28-201ENST00000253024 NBR2O15453 112 aa16.78■□□□□ 0.28
TRIM28-201ENST00000253024 CRIP1P50238 77 aa16.78■□□□□ 0.28
TRIM28-201ENST00000253024 WIPF2Q8TF74 440 aaPredicted RBP16.78■□□□□ 0.28
TRIM28-201ENST00000253024 TMEM70Q9BUB7 260 aa16.78■□□□□ 0.28
TRIM28-201ENST00000253024 PRSS22Q9GZN4 317 aa16.78■□□□□ 0.28
TRIM28-201ENST00000253024 RAXQ9Y2V3 346 aa16.78■□□□□ 0.28
TRIM28-201ENST00000253024 SMKR1H3BMG3 65 aa16.78■□□□□ 0.28
TRIM28-201ENST00000253024 NDUFB8O95169 186 aa16.78■□□□□ 0.28
TRIM28-201ENST00000253024 MRPL27Q9P0M9 148 aaKnown RBP16.78■□□□□ 0.28
TRIM28-201ENST00000253024 PSG8Q9UQ74 426 aa16.78■□□□□ 0.28
TRIM28-201ENST00000253024 M0QZK8 103 aa16.77■□□□□ 0.28
TRIM28-201ENST00000253024 CHRDL1Q9BU40 450 aa16.77■□□□□ 0.28
TRIM28-201ENST00000253024 OTORQ9NRC9 128 aa16.77■□□□□ 0.28
TRIM28-201ENST00000253024 DPM3Q9P2X0 92 aa16.77■□□□□ 0.28
TRIM28-201ENST00000253024 CELSR2Q9HCU4 2923 aa16.77■□□□□ 0.28
TRIM28-201ENST00000253024 CSPG4Q6UVK1 2322 aa16.77■□□□□ 0.28
TRIM28-201ENST00000253024 TRBV19A0A075B6N1 114 aa16.77■□□□□ 0.28
TRIM28-201ENST00000253024 IGHV3OR16-10A0A075B7F0 116 aa16.77■□□□□ 0.28
TRIM28-201ENST00000253024 LINC00614P0C842 121 aa16.77■□□□□ 0.28
TRIM28-201ENST00000253024 PPIFP30405 207 aaKnown RBP16.77■□□□□ 0.28
TRIM28-201ENST00000253024 ZNF207O43670 478 aaKnown RBP16.77■□□□□ 0.27
TRIM28-201ENST00000253024 LOXL1Q08397 574 aaPredicted RBP16.76■□□□□ 0.27
TRIM28-201ENST00000253024 VKORC1Q9BQB6 163 aa16.76■□□□□ 0.27
TRIM28-201ENST00000253024 LOC102724200A0A096LPH7 203 aaPredicted RBP16.76■□□□□ 0.27
TRIM28-201ENST00000253024 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP16.76■□□□□ 0.27
TRIM28-201ENST00000253024 FOXE3Q13461 319 aa16.76■□□□□ 0.27
TRIM28-201ENST00000253024 FAM120AOSQ5T036 256 aa16.76■□□□□ 0.27
TRIM28-201ENST00000253024 C8orf31Q8N9H6 132 aa16.76■□□□□ 0.27
TRIM28-201ENST00000253024 TRAV9-2A0A087WT02 112 aa16.75■□□□□ 0.27
TRIM28-201ENST00000253024 APOHP02749 345 aaPredicted RBP16.75■□□□□ 0.27
TRIM28-201ENST00000253024 ECSCRQ19T08 205 aa16.75■□□□□ 0.27
TRIM28-201ENST00000253024 SIGLEC15Q6ZMC9 328 aa16.75■□□□□ 0.27
TRIM28-201ENST00000253024 LINC00527Q9UJ94 153 aa16.75■□□□□ 0.27
TRIM28-201ENST00000253024 UTP20O75691 2785 aaKnown RBP16.74■□□□□ 0.27
TRIM28-201ENST00000253024 NPIPB5A8MRT5 1133 aa16.74■□□□□ 0.27
TRIM28-201ENST00000253024 KLHDC1Q8N7A1 406 aa16.74■□□□□ 0.27
TRIM28-201ENST00000253024 OR8A1Q8NGG7 326 aa16.74■□□□□ 0.27
TRIM28-201ENST00000253024 SHANK2-AS3Q9BTD1 123 aa16.74■□□□□ 0.27
TRIM28-201ENST00000253024 LOC105371242A0A075B767 164 aa16.74■□□□□ 0.27
TRIM28-201ENST00000253024 K7ENP7 123 aa16.74■□□□□ 0.27
TRIM28-201ENST00000253024 NCR2O95944 276 aa16.74■□□□□ 0.27
TRIM28-201ENST00000253024 MPV17L2Q567V2 206 aa16.73■□□□□ 0.27
TRIM28-201ENST00000253024 AMN1Q8IY45 258 aa16.73■□□□□ 0.27
TRIM28-201ENST00000253024 A0A1B0GUT8 65 aa16.73■□□□□ 0.27
TRIM28-201ENST00000253024 SYS1-DBNDD2H3BUS1 97 aa16.73■□□□□ 0.27
TRIM28-201ENST00000253024 KLF5Q13887 457 aaPredicted RBP16.73■□□□□ 0.27
TRIM28-201ENST00000253024 PRSS3P2Q8NHM4 247 aa16.73■□□□□ 0.27
TRIM28-201ENST00000253024 ATP5L2Q7Z4Y8 100 aa16.72■□□□□ 0.27
TRIM28-201ENST00000253024 ZNF414Q96IQ9 312 aa16.72■□□□□ 0.27
TRIM28-201ENST00000253024 FANCD2OSQ96PS1 177 aa16.72■□□□□ 0.27
TRIM28-201ENST00000253024 DOPEY2Q9Y3R5 2298 aa16.72■□□□□ 0.27
TRIM28-201ENST00000253024 LY6LH3BQJ8 138 aa16.71■□□□□ 0.27
TRIM28-201ENST00000253024 ZFP36P26651 326 aaKnown RBP16.71■□□□□ 0.27
TRIM28-201ENST00000253024 IFI27P40305 119 aaPredicted RBP16.71■□□□□ 0.27
TRIM28-201ENST00000253024 LYZL1Q6UWQ5 148 aa16.71■□□□□ 0.27
TRIM28-201ENST00000253024 RASL11AQ6T310 242 aa16.71■□□□□ 0.27
TRIM28-201ENST00000253024 VMO1Q7Z5L0 202 aa16.71■□□□□ 0.27
TRIM28-201ENST00000253024 RNF182Q8N6D2 247 aa16.71■□□□□ 0.27
TRIM28-201ENST00000253024 C1RLQ9NZP8 487 aa16.71■□□□□ 0.27
TRIM28-201ENST00000253024 A0A1W2PPR1 153 aa16.71■□□□□ 0.26
TRIM28-201ENST00000253024 H3BRN7 92 aa16.71■□□□□ 0.26
TRIM28-201ENST00000253024 SFTPCP11686 197 aa16.71■□□□□ 0.26
TRIM28-201ENST00000253024 C5orf64Q2M2E5 130 aa16.71■□□□□ 0.26
TRIM28-201ENST00000253024 TNFRSF14Q92956 283 aa16.71■□□□□ 0.26
TRIM28-201ENST00000253024 VGLL1Q99990 258 aa16.71■□□□□ 0.26
TRIM28-201ENST00000253024 J3KRW8 73 aa16.7■□□□□ 0.26
TRIM28-201ENST00000253024 CT45A10P0DMU9 189 aa16.7■□□□□ 0.26
TRIM28-201ENST00000253024 GPR183P32249 361 aa16.7■□□□□ 0.26
TRIM28-201ENST00000253024 PCP4P48539 62 aa16.7■□□□□ 0.26
TRIM28-201ENST00000253024 ERCC8Q13216 396 aa16.7■□□□□ 0.26
TRIM28-201ENST00000253024 ARPC1AQ92747 370 aa16.7■□□□□ 0.26
TRIM28-201ENST00000253024 D6R8Y8 96 aa16.7■□□□□ 0.26
TRIM28-201ENST00000253024 PSG3Q16557 428 aa16.7■□□□□ 0.26
TRIM28-201ENST00000253024 CFHR4Q92496 578 aa16.7■□□□□ 0.26
TRIM28-201ENST00000253024 RAB1BQ9H0U4 201 aa16.7■□□□□ 0.26
TRIM28-201ENST00000253024 A0A087X0K7 114 aa16.69■□□□□ 0.26
TRIM28-201ENST00000253024 PLP1P60201 277 aa16.69■□□□□ 0.26
TRIM28-201ENST00000253024 TIMD4Q96H15 378 aa16.69■□□□□ 0.26
TRIM28-201ENST00000253024 MSRB1Q9NZV6 116 aa16.69■□□□□ 0.26
TRIM28-201ENST00000253024 POLQO75417 2590 aa16.69■□□□□ 0.26
TRIM28-201ENST00000253024 ITPR1Q14643 2758 aa16.69■□□□□ 0.26
TRIM28-201ENST00000253024 CBY3A6NI87 242 aa16.69■□□□□ 0.26
TRIM28-201ENST00000253024 LINC01548A6NM66 108 aa16.69■□□□□ 0.26
TRIM28-201ENST00000253024 NUDT3O95989 172 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms