RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 RHEBQ15382 184 aa13□□□□□ -0.33
CLN3-252ENST00000636907 TMEM241Q24JQ0 296 aa13□□□□□ -0.33
CLN3-252ENST00000636907 ZNF586Q9NXT0 402 aa13□□□□□ -0.33
CLN3-252ENST00000636907 FAM181BA6NEQ2 426 aa12.99□□□□□ -0.33
CLN3-252ENST00000636907 IGLC2P0DOY2 106 aa12.99□□□□□ -0.33
CLN3-252ENST00000636907 MYCNOSP40205 109 aa12.99□□□□□ -0.33
CLN3-252ENST00000636907 PNRC1Q12796 327 aaPredicted RBP12.99□□□□□ -0.33
CLN3-252ENST00000636907 SCGB2A2Q13296 93 aa12.99□□□□□ -0.33
CLN3-252ENST00000636907 TEX38Q6PEX7 206 aa12.99□□□□□ -0.33
CLN3-252ENST00000636907 CBLN2Q8IUK8 224 aa12.99□□□□□ -0.33
CLN3-252ENST00000636907 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.99□□□□□ -0.33
CLN3-252ENST00000636907 SERTAD4Q9NUC0 356 aa12.99□□□□□ -0.33
CLN3-252ENST00000636907 RPLP1P05386 114 aaKnown RBP12.99□□□□□ -0.33
CLN3-252ENST00000636907 RPL15P61313 204 aaKnown RBP12.99□□□□□ -0.33
CLN3-252ENST00000636907 OR4F17Q8NGA8 305 aa12.99□□□□□ -0.33
CLN3-252ENST00000636907 ELANEP08246 267 aa12.98□□□□□ -0.33
CLN3-252ENST00000636907 SRD5A1P18405 259 aa12.98□□□□□ -0.33
CLN3-252ENST00000636907 RPL23P62829 140 aaKnown RBP12.98□□□□□ -0.33
CLN3-252ENST00000636907 FOXE3Q13461 319 aa12.98□□□□□ -0.33
CLN3-252ENST00000636907 C17orf77Q96MU5 243 aa12.98□□□□□ -0.33
CLN3-252ENST00000636907 OR5B12Q96R08 314 aa12.98□□□□□ -0.33
CLN3-252ENST00000636907 TRBV19A0A075B6N1 114 aa12.97□□□□□ -0.33
CLN3-252ENST00000636907 PGPA6NDG6 321 aa12.97□□□□□ -0.33
CLN3-252ENST00000636907 CLDN34H7C241 214 aa12.97□□□□□ -0.33
CLN3-252ENST00000636907 S100A7P31151 101 aa12.97□□□□□ -0.33
CLN3-252ENST00000636907 ADIRFQ15847 76 aa12.97□□□□□ -0.33
CLN3-252ENST00000636907 Q6ZSV7 163 aa12.97□□□□□ -0.33
CLN3-252ENST00000636907 C2CD4CQ8TF44 421 aa12.97□□□□□ -0.33
CLN3-252ENST00000636907 Q9H3A6 140 aa12.97□□□□□ -0.33
CLN3-252ENST00000636907 TRBV20OR9-2A0A075B6H5 130 aa12.96□□□□□ -0.33
CLN3-252ENST00000636907 ZNF207O43670 478 aaKnown RBP12.96□□□□□ -0.33
CLN3-252ENST00000636907 RPL35P42766 123 aaKnown RBP12.96□□□□□ -0.33
CLN3-252ENST00000636907 MYOZ3Q8TDC0 251 aa12.96□□□□□ -0.33
CLN3-252ENST00000636907 METTL26Q96S19 204 aa12.96□□□□□ -0.33
CLN3-252ENST00000636907 PEF1Q9UBV8 284 aaKnown RBP12.96□□□□□ -0.33
CLN3-252ENST00000636907 RNF24Q9Y225 148 aa12.96□□□□□ -0.33
CLN3-252ENST00000636907 PGPEP1LA6NFU8 196 aa12.96□□□□□ -0.34
CLN3-252ENST00000636907 NDUFA4O00483 81 aa12.96□□□□□ -0.34
CLN3-252ENST00000636907 BUB3O43684 328 aa12.96□□□□□ -0.34
CLN3-252ENST00000636907 APOHP02749 345 aaPredicted RBP12.96□□□□□ -0.34
CLN3-252ENST00000636907 SLC25A5P05141 298 aaKnown RBP12.96□□□□□ -0.34
CLN3-252ENST00000636907 RPL7P18124 248 aaKnown RBP12.96□□□□□ -0.34
CLN3-252ENST00000636907 GNG5P63218 68 aa12.96□□□□□ -0.34
CLN3-252ENST00000636907 FAM209BQ5JX69 171 aa12.96□□□□□ -0.34
CLN3-252ENST00000636907 UNQ9165/PRO28630Q6UXU0 137 aa12.96□□□□□ -0.34
CLN3-252ENST00000636907 OR8I2Q8N0Y5 310 aa12.96□□□□□ -0.34
CLN3-252ENST00000636907 RNF152Q8N8N0 203 aa12.96□□□□□ -0.34
CLN3-252ENST00000636907 CDC42EP3Q9UKI2 254 aa12.96□□□□□ -0.34
CLN3-252ENST00000636907 HELTA6NFD8 242 aa12.95□□□□□ -0.34
CLN3-252ENST00000636907 B4DEV8 164 aa12.95□□□□□ -0.34
CLN3-252ENST00000636907 SLC17A3O00476 420 aa12.95□□□□□ -0.34
CLN3-252ENST00000636907 GGCTO75223 188 aaKnown RBP12.95□□□□□ -0.34
CLN3-252ENST00000636907 OTORQ9NRC9 128 aa12.95□□□□□ -0.34
CLN3-252ENST00000636907 SMCO4Q9NRQ5 59 aa12.95□□□□□ -0.34
CLN3-252ENST00000636907 SMAD5-AS1Q9Y6J3 95 aa12.95□□□□□ -0.34
CLN3-252ENST00000636907 U3KQE9 123 aa12.95□□□□□ -0.34
CLN3-252ENST00000636907 IGHV3OR16-13A0A075B7E8 117 aa12.94□□□□□ -0.34
CLN3-252ENST00000636907 A0A087WWC5 75 aa12.94□□□□□ -0.34
CLN3-252ENST00000636907 IGHV3-74A0A0B4J1X5 117 aa12.94□□□□□ -0.34
CLN3-252ENST00000636907 IGHV3-66A0A0C4DH42 116 aa12.94□□□□□ -0.34
CLN3-252ENST00000636907 PEX7O00628 323 aa12.94□□□□□ -0.34
CLN3-252ENST00000636907 RNASE1P07998 156 aaKnown RBP12.94□□□□□ -0.34
CLN3-252ENST00000636907 Q71RC1 249 aaPredicted RBP12.94□□□□□ -0.34
CLN3-252ENST00000636907 LINC01551Q86U37 167 aa12.94□□□□□ -0.34
CLN3-252ENST00000636907 EXOC3-AS1Q8N2X6 119 aa12.94□□□□□ -0.34
CLN3-252ENST00000636907 TCEAL7Q9BRU2 100 aa12.94□□□□□ -0.34
CLN3-252ENST00000636907 AURKAIP1Q9NWT8 199 aaPredicted RBP12.94□□□□□ -0.34
CLN3-252ENST00000636907 EPDR1Q9UM22 224 aa12.94□□□□□ -0.34
CLN3-252ENST00000636907 IGHV3-49A0A0A0MS15 119 aa12.93□□□□□ -0.34
CLN3-252ENST00000636907 C9JCJ5 164 aa12.93□□□□□ -0.34
CLN3-252ENST00000636907 CD99P14209 185 aa12.93□□□□□ -0.34
CLN3-252ENST00000636907 SIGLEC15Q6ZMC9 328 aa12.93□□□□□ -0.34
CLN3-252ENST00000636907 KLHDC1Q8N7A1 406 aa12.93□□□□□ -0.34
CLN3-252ENST00000636907 C5orf17Q8NAS9 161 aa12.93□□□□□ -0.34
CLN3-252ENST00000636907 ZNF418Q8TF45 676 aaPredicted RBP12.93□□□□□ -0.34
CLN3-252ENST00000636907 HIST1H2BAQ96A08 127 aa12.93□□□□□ -0.34
CLN3-252ENST00000636907 LINC00479Q96M42 142 aa12.93□□□□□ -0.34
CLN3-252ENST00000636907 RNF212Q495C1 297 aa12.93□□□□□ -0.34
CLN3-252ENST00000636907 OCC1Q8TAD7 63 aa12.93□□□□□ -0.34
CLN3-252ENST00000636907 TMEM190Q8WZ59 177 aa12.93□□□□□ -0.34
CLN3-252ENST00000636907 RPH3ALQ9UNE2 315 aa12.93□□□□□ -0.34
CLN3-252ENST00000636907 CUBNO60494 3623 aa12.92□□□□□ -0.34
CLN3-252ENST00000636907 TSPAN4O14817 238 aa12.92□□□□□ -0.34
CLN3-252ENST00000636907 LGALS1P09382 135 aaKnown RBP12.92□□□□□ -0.34
CLN3-252ENST00000636907 ATF4P18848 351 aaPredicted RBP12.92□□□□□ -0.34
CLN3-252ENST00000636907 CNN1P51911 297 aaKnown RBP12.92□□□□□ -0.34
CLN3-252ENST00000636907 HILS1P60008 231 aa12.92□□□□□ -0.34
CLN3-252ENST00000636907 PDE6HQ13956 83 aa12.92□□□□□ -0.34
CLN3-252ENST00000636907 CENPWQ5EE01 88 aa12.92□□□□□ -0.34
CLN3-252ENST00000636907 LYPD1Q8N2G4 141 aa12.92□□□□□ -0.34
CLN3-252ENST00000636907 UBE2E2Q96LR5 201 aa12.92□□□□□ -0.34
CLN3-252ENST00000636907 IGF2BP2-AS1Q96M15 143 aa12.92□□□□□ -0.34
CLN3-252ENST00000636907 TRAV34A0A0B4J273 112 aa12.91□□□□□ -0.34
CLN3-252ENST00000636907 GNG4P50150 75 aa12.91□□□□□ -0.34
CLN3-252ENST00000636907 C1orf194Q5T5A4 169 aa12.91□□□□□ -0.34
CLN3-252ENST00000636907 ISOC2Q96AB3 205 aa12.91□□□□□ -0.34
CLN3-252ENST00000636907 GPR82Q96P67 336 aa12.91□□□□□ -0.34
CLN3-252ENST00000636907 HIVEP2P31629 2446 aa12.91□□□□□ -0.34
CLN3-252ENST00000636907 MTORP42345 2549 aa12.9□□□□□ -0.34
CLN3-252ENST00000636907 ZNF320A2RRD8 509 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 96.7 ms