RNA–Protein interactions for RNA: ENST00000600718.5

SHKBP1-224, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 1,993 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-224ENST00000600718 GNB4Q9HAV0 340 aa13.67□□□□□ -0.22
SHKBP1-224ENST00000600718 FLNAP21333 2647 aaKnown RBP13.67□□□□□ -0.22
SHKBP1-224ENST00000600718 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.67□□□□□ -0.22
SHKBP1-224ENST00000600718 TMEM250H0YL14 139 aa13.67□□□□□ -0.22
SHKBP1-224ENST00000600718 H3BRN7 92 aa13.67□□□□□ -0.22
SHKBP1-224ENST00000600718 OR10J4P0C629 311 aa13.67□□□□□ -0.22
SHKBP1-224ENST00000600718 CD99P14209 185 aa13.67□□□□□ -0.22
SHKBP1-224ENST00000600718 S100A7P31151 101 aa13.67□□□□□ -0.22
SHKBP1-224ENST00000600718 UBE2L3P68036 154 aaKnown RBP13.67□□□□□ -0.22
SHKBP1-224ENST00000600718 USF2Q15853 346 aaPredicted RBP13.67□□□□□ -0.22
SHKBP1-224ENST00000600718 TEX38Q6PEX7 206 aa13.67□□□□□ -0.22
SHKBP1-224ENST00000600718 ZNF469Q96JG9 3925 aaPredicted RBP13.67□□□□□ -0.22
SHKBP1-224ENST00000600718 AKAP9Q99996 3911 aa13.67□□□□□ -0.22
SHKBP1-224ENST00000600718 H3BQ15 152 aa13.66□□□□□ -0.22
SHKBP1-224ENST00000600718 PDE6DO43924 150 aa13.66□□□□□ -0.22
SHKBP1-224ENST00000600718 CEBPGP53567 150 aa13.66□□□□□ -0.22
SHKBP1-224ENST00000600718 ELOBQ15370 118 aa13.66□□□□□ -0.22
SHKBP1-224ENST00000600718 ZNF343Q6P1L6 599 aa13.66□□□□□ -0.22
SHKBP1-224ENST00000600718 ZNF418Q8TF45 676 aaPredicted RBP13.66□□□□□ -0.22
SHKBP1-224ENST00000600718 ESM1Q9NQ30 184 aa13.66□□□□□ -0.22
SHKBP1-224ENST00000600718 RNF24Q9Y225 148 aa13.66□□□□□ -0.22
SHKBP1-224ENST00000600718 YTHDF2Q9Y5A9 579 aaKnown RBP13.66□□□□□ -0.22
SHKBP1-224ENST00000600718 FAM181BA6NEQ2 426 aa13.65□□□□□ -0.22
SHKBP1-224ENST00000600718 BMPR1BO00238 502 aa13.65□□□□□ -0.22
SHKBP1-224ENST00000600718 PYYP10082 97 aa13.65□□□□□ -0.22
SHKBP1-224ENST00000600718 ATP5G3P48201 142 aa13.65□□□□□ -0.22
SHKBP1-224ENST00000600718 FOXE3Q13461 319 aa13.65□□□□□ -0.22
SHKBP1-224ENST00000600718 TOMM20LQ6UXN7 152 aa13.65□□□□□ -0.22
SHKBP1-224ENST00000600718 FXYD5Q96DB9 178 aa13.65□□□□□ -0.22
SHKBP1-224ENST00000600718 ZNF414Q96IQ9 312 aa13.65□□□□□ -0.22
SHKBP1-224ENST00000600718 TMEM14CQ9P0S9 112 aa13.65□□□□□ -0.22
SHKBP1-224ENST00000600718 F6UZH7 168 aa13.65□□□□□ -0.22
SHKBP1-224ENST00000600718 ELANEP08246 267 aa13.65□□□□□ -0.22
SHKBP1-224ENST00000600718 ARL3P36405 182 aa13.65□□□□□ -0.22
SHKBP1-224ENST00000600718 ZNF674Q2M3X9 581 aa13.65□□□□□ -0.22
SHKBP1-224ENST00000600718 FAM90A2PQ658T7 463 aa13.65□□□□□ -0.22
SHKBP1-224ENST00000600718 RABAC1Q9UI14 185 aa13.65□□□□□ -0.22
SHKBP1-224ENST00000600718 A0A1W2PRE2 83 aa13.64□□□□□ -0.23
SHKBP1-224ENST00000600718 RPL15P61313 204 aaKnown RBP13.64□□□□□ -0.23
SHKBP1-224ENST00000600718 LEMD1Q68G75 181 aa13.64□□□□□ -0.23
SHKBP1-224ENST00000600718 LCNL1Q6ZST4 164 aa13.64□□□□□ -0.23
SHKBP1-224ENST00000600718 OR4X2Q8NGF9 303 aa13.64□□□□□ -0.23
SHKBP1-224ENST00000600718 ZFAND3Q9H8U3 227 aa13.64□□□□□ -0.23
SHKBP1-224ENST00000600718 SERTAD4Q9NUC0 356 aa13.64□□□□□ -0.23
SHKBP1-224ENST00000600718 IGHV3-35A0A0C4DH35 117 aa13.63□□□□□ -0.23
SHKBP1-224ENST00000600718 PPP5D1E7EU14 171 aa13.63□□□□□ -0.23
SHKBP1-224ENST00000600718 GP9P14770 177 aa13.63□□□□□ -0.23
SHKBP1-224ENST00000600718 TVP23CQ96ET8 276 aa13.63□□□□□ -0.23
SHKBP1-224ENST00000600718 HIST1H2BKO60814 126 aa13.63□□□□□ -0.23
SHKBP1-224ENST00000600718 IGHV3-11P01762 117 aa13.63□□□□□ -0.23
SHKBP1-224ENST00000600718 HIST1H2BJP06899 126 aa13.63□□□□□ -0.23
SHKBP1-224ENST00000600718 RNASE1P07998 156 aaKnown RBP13.63□□□□□ -0.23
SHKBP1-224ENST00000600718 CXCL1P09341 107 aa13.63□□□□□ -0.23
SHKBP1-224ENST00000600718 NBEAP1P0C6P0 100 aa13.63□□□□□ -0.23
SHKBP1-224ENST00000600718 HIST1H2BOP23527 126 aa13.63□□□□□ -0.23
SHKBP1-224ENST00000600718 HIST1H2BBP33778 126 aa13.63□□□□□ -0.23
SHKBP1-224ENST00000600718 HIST1H2BDP58876 126 aa13.63□□□□□ -0.23
SHKBP1-224ENST00000600718 HIST1H2BCP62807 126 aa13.63□□□□□ -0.23
SHKBP1-224ENST00000600718 HIST2H2BEQ16778 126 aa13.63□□□□□ -0.23
SHKBP1-224ENST00000600718 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.63□□□□□ -0.23
SHKBP1-224ENST00000600718 C10orf99Q6UWK7 81 aa13.63□□□□□ -0.23
SHKBP1-224ENST00000600718 BPIFA4PQ86YQ2 179 aa13.63□□□□□ -0.23
SHKBP1-224ENST00000600718 HIST1H2BHQ93079 126 aa13.63□□□□□ -0.23
SHKBP1-224ENST00000600718 HIST1H2BNQ99877 126 aa13.63□□□□□ -0.23
SHKBP1-224ENST00000600718 HIST1H2BMQ99879 126 aa13.63□□□□□ -0.23
SHKBP1-224ENST00000600718 ZFHX3Q15911 3703 aa13.63□□□□□ -0.23
SHKBP1-224ENST00000600718 ZNF727A8MUV8 499 aa13.62□□□□□ -0.23
SHKBP1-224ENST00000600718 PPP1R2P9O14990 202 aa13.62□□□□□ -0.23
SHKBP1-224ENST00000600718 HIST3H2BBQ8N257 126 aa13.62□□□□□ -0.23
SHKBP1-224ENST00000600718 RNF152Q8N8N0 203 aa13.62□□□□□ -0.23
SHKBP1-224ENST00000600718 OR10D4PQ8NGN7 298 aa13.62□□□□□ -0.23
SHKBP1-224ENST00000600718 C14orf144Q96I85 54 aa13.62□□□□□ -0.23
SHKBP1-224ENST00000600718 B4DEV8 164 aa13.62□□□□□ -0.23
SHKBP1-224ENST00000600718 HIST1H1EP10412 219 aaKnown RBP13.62□□□□□ -0.23
SHKBP1-224ENST00000600718 Q6ZSV7 163 aa13.62□□□□□ -0.23
SHKBP1-224ENST00000600718 HILS1P60008 231 aa13.61□□□□□ -0.23
SHKBP1-224ENST00000600718 PKIAP61925 76 aa13.61□□□□□ -0.23
SHKBP1-224ENST00000600718 REC114Q7Z4M0 266 aa13.61□□□□□ -0.23
SHKBP1-224ENST00000600718 MYOZ3Q8TDC0 251 aa13.61□□□□□ -0.23
SHKBP1-224ENST00000600718 NIPSNAP3BQ9BS92 247 aa13.61□□□□□ -0.23
SHKBP1-224ENST00000600718 PEF1Q9UBV8 284 aaKnown RBP13.61□□□□□ -0.23
SHKBP1-224ENST00000600718 NDUFA4O00483 81 aa13.6□□□□□ -0.23
SHKBP1-224ENST00000600718 TRBV12-3P01733 135 aa13.6□□□□□ -0.23
SHKBP1-224ENST00000600718 NPPCP23582 126 aa13.6□□□□□ -0.23
SHKBP1-224ENST00000600718 SUMO1P63165 101 aaKnown RBP13.6□□□□□ -0.23
SHKBP1-224ENST00000600718 CDPF1Q6NVV7 123 aa13.6□□□□□ -0.23
SHKBP1-224ENST00000600718 OR4F17Q8NGA8 305 aa13.6□□□□□ -0.23
SHKBP1-224ENST00000600718 JMJD8Q96S16 334 aa13.6□□□□□ -0.23
SHKBP1-224ENST00000600718 GGCTO75223 188 aaKnown RBP13.6□□□□□ -0.23
SHKBP1-224ENST00000600718 RPLP1P05386 114 aaKnown RBP13.6□□□□□ -0.23
SHKBP1-224ENST00000600718 RPUSD4Q96CM3 377 aaKnown RBP13.6□□□□□ -0.23
SHKBP1-224ENST00000600718 PARLQ9H300 379 aa13.6□□□□□ -0.23
SHKBP1-224ENST00000600718 GGTLC3B5MD39 225 aa13.59□□□□□ -0.23
SHKBP1-224ENST00000600718 BLNKQ8WV28 456 aa13.59□□□□□ -0.23
SHKBP1-224ENST00000600718 C11orf52Q96A22 123 aa13.59□□□□□ -0.23
SHKBP1-224ENST00000600718 METTL26Q96S19 204 aa13.59□□□□□ -0.23
SHKBP1-224ENST00000600718 SMIM7Q9BQ49 75 aa13.59□□□□□ -0.23
SHKBP1-224ENST00000600718 TMEM242Q9NWH2 141 aa13.59□□□□□ -0.23
SHKBP1-224ENST00000600718 MYO9AB2RTY4 2548 aa13.59□□□□□ -0.23
SHKBP1-224ENST00000600718 MXRA5Q9NR99 2828 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 564 ms