RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 DEFB1P60022 68 aa9.69□□□□□ -0.86
TRIM28-211ENST00000597968 SELENOTP62341 195 aa9.69□□□□□ -0.86
TRIM28-211ENST00000597968 SOHLH1Q5JUK2 328 aa9.69□□□□□ -0.86
TRIM28-211ENST00000597968 SDHCQ99643 169 aaPredicted RBP9.69□□□□□ -0.86
TRIM28-211ENST00000597968 SLC25A32Q9H2D1 315 aa9.69□□□□□ -0.86
TRIM28-211ENST00000597968 PRSS29PA6NIE9 313 aa9.68□□□□□ -0.86
TRIM28-211ENST00000597968 LYRM9A8MSI8 78 aa9.68□□□□□ -0.86
TRIM28-211ENST00000597968 ZNF701M0R085 212 aaPredicted RBP9.68□□□□□ -0.86
TRIM28-211ENST00000597968 ADAP1O75689 374 aa9.68□□□□□ -0.86
TRIM28-211ENST00000597968 RPL7P18124 248 aaKnown RBP9.68□□□□□ -0.86
TRIM28-211ENST00000597968 EMP1P54849 157 aa9.68□□□□□ -0.86
TRIM28-211ENST00000597968 PLP1P60201 277 aa9.68□□□□□ -0.86
TRIM28-211ENST00000597968 RAP2BP61225 183 aa9.68□□□□□ -0.86
TRIM28-211ENST00000597968 ID3Q02535 119 aa9.68□□□□□ -0.86
TRIM28-211ENST00000597968 AKR1C1Q04828 323 aa9.68□□□□□ -0.86
TRIM28-211ENST00000597968 AMTNQ6UX39 209 aa9.68□□□□□ -0.86
TRIM28-211ENST00000597968 UBE2DNLQ8IWF7 75 aa9.68□□□□□ -0.86
TRIM28-211ENST00000597968 TMEM208Q9BTX3 173 aa9.68□□□□□ -0.86
TRIM28-211ENST00000597968 RSG1Q9BU20 258 aa9.68□□□□□ -0.86
TRIM28-211ENST00000597968 KRTAP17-1Q9BYP8 105 aa9.68□□□□□ -0.86
TRIM28-211ENST00000597968 SLC25A22Q9H936 323 aa9.68□□□□□ -0.86
TRIM28-211ENST00000597968 YTHDF2Q9Y5A9 579 aaKnown RBP9.68□□□□□ -0.86
TRIM28-211ENST00000597968 C9orf170A2RU37 121 aa9.67□□□□□ -0.86
TRIM28-211ENST00000597968 NAP1L6A6NFF2 107 aa9.67□□□□□ -0.86
TRIM28-211ENST00000597968 H3BP45 60 aa9.67□□□□□ -0.86
TRIM28-211ENST00000597968 ORM2P19652 201 aa9.67□□□□□ -0.86
TRIM28-211ENST00000597968 GATA2P23769 480 aaPredicted RBP9.67□□□□□ -0.86
TRIM28-211ENST00000597968 INPP1P49441 399 aa9.67□□□□□ -0.86
TRIM28-211ENST00000597968 FXYD7P58549 80 aa9.67□□□□□ -0.86
TRIM28-211ENST00000597968 DAD1P61803 113 aa9.67□□□□□ -0.86
TRIM28-211ENST00000597968 C4orf46Q504U0 113 aa9.67□□□□□ -0.86
TRIM28-211ENST00000597968 SPANXN5Q5MJ07 72 aa9.67□□□□□ -0.86
TRIM28-211ENST00000597968 TRIQKQ629K1 86 aa9.67□□□□□ -0.86
TRIM28-211ENST00000597968 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.67□□□□□ -0.86
TRIM28-211ENST00000597968 TMEM182Q6ZP80 229 aaPredicted RBP9.67□□□□□ -0.86
TRIM28-211ENST00000597968 Q6ZR54 194 aa9.67□□□□□ -0.86
TRIM28-211ENST00000597968 TMEM256Q8N2U0 113 aa9.67□□□□□ -0.86
TRIM28-211ENST00000597968 PCLOQ9Y6V0 5065 aa9.67□□□□□ -0.86
TRIM28-211ENST00000597968 F6UB75 175 aa9.66□□□□□ -0.86
TRIM28-211ENST00000597968 H3BRN7 92 aa9.66□□□□□ -0.86
TRIM28-211ENST00000597968 K7EPK0 472 aa9.66□□□□□ -0.86
TRIM28-211ENST00000597968 RTL8CO15255 209 aa9.66□□□□□ -0.86
TRIM28-211ENST00000597968 NDUFB6O95139 128 aa9.66□□□□□ -0.86
TRIM28-211ENST00000597968 INSP01308 110 aa9.66□□□□□ -0.86
TRIM28-211ENST00000597968 ANXA7P20073 488 aaKnown RBP9.66□□□□□ -0.86
TRIM28-211ENST00000597968 CNN1P51911 297 aaKnown RBP9.66□□□□□ -0.86
TRIM28-211ENST00000597968 POLR2GP62487 172 aaKnown RBP eCLIP9.66□□□□□ -0.86
TRIM28-211ENST00000597968 CNPY1Q3B7I2 92 aa9.66□□□□□ -0.86
TRIM28-211ENST00000597968 PXDC1Q5TGL8 231 aa9.66□□□□□ -0.86
TRIM28-211ENST00000597968 ACOT7LQ6ZUV0 252 aa9.66□□□□□ -0.86
TRIM28-211ENST00000597968 C17orf77Q96MU5 243 aa9.66□□□□□ -0.86
TRIM28-211ENST00000597968 SHANK2-AS3Q9BTD1 123 aa9.66□□□□□ -0.86
TRIM28-211ENST00000597968 SLC25A39Q9BZJ4 359 aaPredicted RBP9.66□□□□□ -0.86
TRIM28-211ENST00000597968 DYNC1H1Q14204 4646 aaKnown RBP9.66□□□□□ -0.86
TRIM28-211ENST00000597968 DNAH11Q96DT5 4516 aa9.66□□□□□ -0.86
TRIM28-211ENST00000597968 A0A087X0K7 114 aa9.65□□□□□ -0.86
TRIM28-211ENST00000597968 HYPMO75409 117 aa9.65□□□□□ -0.86
TRIM28-211ENST00000597968 IL5P05113 134 aa9.65□□□□□ -0.86
TRIM28-211ENST00000597968 OR4E1P0C645 316 aa9.65□□□□□ -0.86
TRIM28-211ENST00000597968 CXCL2P19875 107 aa9.65□□□□□ -0.86
TRIM28-211ENST00000597968 BTCP35070 178 aa9.65□□□□□ -0.86
TRIM28-211ENST00000597968 CYP2G1PQ6ZSU1 146 aa9.65□□□□□ -0.86
TRIM28-211ENST00000597968 OR11H7Q8NGC8 314 aa9.65□□□□□ -0.86
TRIM28-211ENST00000597968 SMIM8Q96KF7 97 aa9.65□□□□□ -0.86
TRIM28-211ENST00000597968 C20orf173Q96LM9 149 aa9.65□□□□□ -0.86
TRIM28-211ENST00000597968 SCRT1Q9BWW7 348 aa9.65□□□□□ -0.86
TRIM28-211ENST00000597968 NPVFQ9HCQ7 196 aa9.65□□□□□ -0.86
TRIM28-211ENST00000597968 HIGD1AQ9Y241 93 aa9.65□□□□□ -0.86
TRIM28-211ENST00000597968 PKD1P98161 4303 aa9.65□□□□□ -0.86
TRIM28-211ENST00000597968 CRXO43186 299 aaPredicted RBP9.64□□□□□ -0.87
TRIM28-211ENST00000597968 TAS2R30P59541 319 aa9.64□□□□□ -0.87
TRIM28-211ENST00000597968 DLK1P80370 383 aa9.64□□□□□ -0.87
TRIM28-211ENST00000597968 GGACTQ9BVM4 153 aa9.64□□□□□ -0.87
TRIM28-211ENST00000597968 TRAV8-2A0A0B4J237 113 aa9.63□□□□□ -0.87
TRIM28-211ENST00000597968 PMS2P5A8MQ11 134 aa9.63□□□□□ -0.87
TRIM28-211ENST00000597968 BOLA2-SMG1P6H3BVE0 249 aa9.63□□□□□ -0.87
TRIM28-211ENST00000597968 CCNKO75909 580 aa9.63□□□□□ -0.87
TRIM28-211ENST00000597968 IL7P13232 177 aa9.63□□□□□ -0.87
TRIM28-211ENST00000597968 TMEM88Q6PEY1 159 aa9.63□□□□□ -0.87
TRIM28-211ENST00000597968 ZNF493Q6ZR52 646 aa9.63□□□□□ -0.87
TRIM28-211ENST00000597968 C20orf144Q9BQM9 153 aa9.63□□□□□ -0.87
TRIM28-211ENST00000597968 PSENENQ9NZ42 101 aa9.63□□□□□ -0.87
TRIM28-211ENST00000597968 M0R2N4 97 aa9.62□□□□□ -0.87
TRIM28-211ENST00000597968 PLA2G10O15496 165 aa9.62□□□□□ -0.87
TRIM28-211ENST00000597968 SSSCA1O60232 199 aa9.62□□□□□ -0.87
TRIM28-211ENST00000597968 TSC22D2O75157 780 aa9.62□□□□□ -0.87
TRIM28-211ENST00000597968 LINC00869P0C866 280 aa9.62□□□□□ -0.87
TRIM28-211ENST00000597968 CXCL3P19876 107 aa9.62□□□□□ -0.87
TRIM28-211ENST00000597968 TAS2R60P59551 318 aa9.62□□□□□ -0.87
TRIM28-211ENST00000597968 SPINK13Q1W4C9 94 aa9.62□□□□□ -0.87
TRIM28-211ENST00000597968 C1orf134Q5TEV5 83 aa9.62□□□□□ -0.87
TRIM28-211ENST00000597968 TEPPQ6URK8 271 aa9.62□□□□□ -0.87
TRIM28-211ENST00000597968 TMEM14EPQ6UXP3 125 aa9.62□□□□□ -0.87
TRIM28-211ENST00000597968 ZNF738Q8NE65 137 aa9.62□□□□□ -0.87
TRIM28-211ENST00000597968 OR10P1Q8NGE3 313 aa9.62□□□□□ -0.87
TRIM28-211ENST00000597968 SMCO3A2RU48 225 aa9.61□□□□□ -0.87
TRIM28-211ENST00000597968 CBY3A6NI87 242 aa9.61□□□□□ -0.87
TRIM28-211ENST00000597968 CENPXA8MT69 81 aa9.61□□□□□ -0.87
TRIM28-211ENST00000597968 HTN3P15516 51 aa9.61□□□□□ -0.87
TRIM28-211ENST00000597968 PSG3Q16557 428 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms