RNA–Protein interactions for RNA: ENST00000581711.1

SMCHD1-207, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 546 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-207ENST00000581711 LIN52Q52LA3 116 aa0.31□□□□□ -2.36
SMCHD1-207ENST00000581711 SLC30A7Q8NEW0 376 aa0.31□□□□□ -2.36
SMCHD1-207ENST00000581711 OR11H6Q8NGC7 330 aa0.31□□□□□ -2.36
SMCHD1-207ENST00000581711 OR2T35Q8NGX2 323 aa0.31□□□□□ -2.36
SMCHD1-207ENST00000581711 TMEM254Q8TBM7 123 aa0.31□□□□□ -2.36
SMCHD1-207ENST00000581711 GPER1Q99527 375 aa0.31□□□□□ -2.36
SMCHD1-207ENST00000581711 KRTAP2-1Q9BYU5 128 aa0.31□□□□□ -2.36
SMCHD1-207ENST00000581711 TMEM133Q9H2Q1 129 aa0.31□□□□□ -2.36
SMCHD1-207ENST00000581711 PARVBQ9HBI1 364 aa0.31□□□□□ -2.36
SMCHD1-207ENST00000581711 ARL2BPQ9Y2Y0 163 aa0.31□□□□□ -2.36
SMCHD1-207ENST00000581711 FAM32AQ9Y421 112 aaKnown RBP0.31□□□□□ -2.36
SMCHD1-207ENST00000581711 DOCK4Q8N1I0 1966 aa0.31□□□□□ -2.36
SMCHD1-207ENST00000581711 FMN1Q68DA7 1419 aa0.3□□□□□ -2.36
SMCHD1-207ENST00000581711 ITPR1Q14643 2758 aa0.3□□□□□ -2.36
SMCHD1-207ENST00000581711 MGAM2Q2M2H8 2515 aa0.3□□□□□ -2.36
SMCHD1-207ENST00000581711 TRBV19A0A075B6N1 114 aa0.3□□□□□ -2.36
SMCHD1-207ENST00000581711 TRAV4A0A0B4J268 109 aa0.3□□□□□ -2.36
SMCHD1-207ENST00000581711 TCRBV4S1A1TA0A5B7 111 aa0.3□□□□□ -2.36
SMCHD1-207ENST00000581711 FAM159BA6NKW6 160 aa0.3□□□□□ -2.36
SMCHD1-207ENST00000581711 HMGB3O15347 200 aaKnown RBP0.3□□□□□ -2.36
SMCHD1-207ENST00000581711 CCL25O15444 150 aa0.3□□□□□ -2.36
SMCHD1-207ENST00000581711 CCL16O15467 120 aa0.3□□□□□ -2.36
SMCHD1-207ENST00000581711 NDUFB3O43676 98 aa0.3□□□□□ -2.36
SMCHD1-207ENST00000581711 TIMM17BO60830 172 aa0.3□□□□□ -2.36
SMCHD1-207ENST00000581711 SERPINA1P01009 418 aa0.3□□□□□ -2.36
SMCHD1-207ENST00000581711 S100A6P06703 90 aa0.3□□□□□ -2.36
SMCHD1-207ENST00000581711 CTXN2P0C2S0 81 aa0.3□□□□□ -2.36
SMCHD1-207ENST00000581711 SERPINB9P50453 376 aa0.3□□□□□ -2.36
SMCHD1-207ENST00000581711 ERVS71-1P61550 626 aa0.3□□□□□ -2.36
SMCHD1-207ENST00000581711 MRPS25P82663 173 aaKnown RBP0.3□□□□□ -2.36
SMCHD1-207ENST00000581711 REEP5Q00765 189 aa0.3□□□□□ -2.36
SMCHD1-207ENST00000581711 MYL5Q02045 173 aa0.3□□□□□ -2.36
SMCHD1-207ENST00000581711 FADDQ13158 208 aa0.3□□□□□ -2.36
SMCHD1-207ENST00000581711 RRN3P1Q2M238 152 aa0.3□□□□□ -2.36
SMCHD1-207ENST00000581711 FAM74A1Q5RGS3 127 aa0.3□□□□□ -2.36
SMCHD1-207ENST00000581711 BCL2L15Q5TBC7 163 aa0.3□□□□□ -2.36
SMCHD1-207ENST00000581711 ST6GALNAC3Q8NDV1 305 aa0.3□□□□□ -2.36
SMCHD1-207ENST00000581711 OR10X1Q8NGY0 326 aa0.3□□□□□ -2.36
SMCHD1-207ENST00000581711 STAG3L4Q8TBR4 150 aa0.3□□□□□ -2.36
SMCHD1-207ENST00000581711 YPEL2Q96QA6 119 aa0.3□□□□□ -2.36
SMCHD1-207ENST00000581711 LINC00467Q9BRT7 94 aa0.3□□□□□ -2.36
SMCHD1-207ENST00000581711 IMUPQ9GZP8 106 aa0.3□□□□□ -2.36
SMCHD1-207ENST00000581711 ENY2Q9NPA8 101 aa0.3□□□□□ -2.36
SMCHD1-207ENST00000581711 OPTCQ9UBM4 332 aa0.3□□□□□ -2.36
SMCHD1-207ENST00000581711 NUP210LQ5VU65 1888 aa0.3□□□□□ -2.36
SMCHD1-207ENST00000581711 MYO5AQ9Y4I1 1855 aaKnown RBP0.3□□□□□ -2.36
SMCHD1-207ENST00000581711 MED12Q93074 2177 aa0.3□□□□□ -2.36
SMCHD1-207ENST00000581711 MXRA5Q9NR99 2828 aa0.3□□□□□ -2.36
SMCHD1-207ENST00000581711 FRAS1Q86XX4 4008 aa0.3□□□□□ -2.36
SMCHD1-207ENST00000581711 ATRQ13535 2644 aa0.3□□□□□ -2.36
SMCHD1-207ENST00000581711 HERC2O95714 4834 aa0.3□□□□□ -2.36
SMCHD1-207ENST00000581711 C2CD3Q4AC94 2353 aa0.3□□□□□ -2.36
SMCHD1-207ENST00000581711 SIP14410 1827 aa0.29□□□□□ -2.36
SMCHD1-207ENST00000581711 NUP98P52948 1817 aa0.29□□□□□ -2.36
SMCHD1-207ENST00000581711 MYLKQ15746 1914 aa0.29□□□□□ -2.36
SMCHD1-207ENST00000581711 TMEM210A6NLX4 147 aa0.29□□□□□ -2.36
SMCHD1-207ENST00000581711 A8MWV9 139 aa0.29□□□□□ -2.36
SMCHD1-207ENST00000581711 TAX1BP3O14907 124 aa0.29□□□□□ -2.36
SMCHD1-207ENST00000581711 CST8O60676 142 aa0.29□□□□□ -2.36
SMCHD1-207ENST00000581711 IFNA7P01567 189 aa0.29□□□□□ -2.36
SMCHD1-207ENST00000581711 PRH1P02810 166 aa0.29□□□□□ -2.36
SMCHD1-207ENST00000581711 IFNA6P05013 189 aa0.29□□□□□ -2.36
SMCHD1-207ENST00000581711 CST2P09228 141 aa0.29□□□□□ -2.36
SMCHD1-207ENST00000581711 ATP5G3P48201 142 aa0.29□□□□□ -2.36
SMCHD1-207ENST00000581711 HSPE1P61604 102 aaKnown RBP0.29□□□□□ -2.36
SMCHD1-207ENST00000581711 UBE2BP63146 152 aa0.29□□□□□ -2.36
SMCHD1-207ENST00000581711 PSG9Q00887 426 aa0.29□□□□□ -2.36
SMCHD1-207ENST00000581711 TMED2Q15363 201 aa0.29□□□□□ -2.36
SMCHD1-207ENST00000581711 C22orf39Q6P5X5 142 aa0.29□□□□□ -2.36
SMCHD1-207ENST00000581711 C2orf82Q6UX34 121 aa0.29□□□□□ -2.36
SMCHD1-207ENST00000581711 LINC00322Q6ZN03 302 aaPredicted RBP0.29□□□□□ -2.36
SMCHD1-207ENST00000581711 GOLT1AQ6ZVE7 132 aa0.29□□□□□ -2.36
SMCHD1-207ENST00000581711 PDZD9Q8IXQ8 264 aa0.29□□□□□ -2.36
SMCHD1-207ENST00000581711 Q8IYB0 196 aa0.29□□□□□ -2.36
SMCHD1-207ENST00000581711 PATE1Q8WXA2 126 aa0.29□□□□□ -2.36
SMCHD1-207ENST00000581711 DGCR14Q96DF8 476 aaKnown RBP0.29□□□□□ -2.36
SMCHD1-207ENST00000581711 TP53RKQ96S44 253 aa0.29□□□□□ -2.36
SMCHD1-207ENST00000581711 PHB2Q99623 299 aa0.29□□□□□ -2.36
SMCHD1-207ENST00000581711 SLC25A21Q9BQT8 299 aaPredicted RBP0.29□□□□□ -2.36
SMCHD1-207ENST00000581711 C9orf16Q9BUW7 83 aa0.29□□□□□ -2.36
SMCHD1-207ENST00000581711 TMEM126AQ9H061 195 aa0.29□□□□□ -2.36
SMCHD1-207ENST00000581711 C10orf95Q9H7T3 257 aa0.29□□□□□ -2.36
SMCHD1-207ENST00000581711 TMEM14CQ9P0S9 112 aa0.29□□□□□ -2.36
SMCHD1-207ENST00000581711 CHCHD2Q9Y6H1 151 aaPredicted RBP0.29□□□□□ -2.36
SMCHD1-207ENST00000581711 LY96Q9Y6Y9 160 aa0.29□□□□□ -2.36
SMCHD1-207ENST00000581711 UTP20O75691 2785 aaKnown RBP0.29□□□□□ -2.36
SMCHD1-207ENST00000581711 AKAP13Q12802 2813 aa0.29□□□□□ -2.36
SMCHD1-207ENST00000581711 USH2AO75445 5202 aa0.29□□□□□ -2.36
SMCHD1-207ENST00000581711 ASCC3Q8N3C0 2202 aaKnown RBP0.29□□□□□ -2.36
SMCHD1-207ENST00000581711 UNC13CQ8NB66 2214 aa0.29□□□□□ -2.36
SMCHD1-207ENST00000581711 KDM6AO15550 1401 aaPredicted RBP0.29□□□□□ -2.36
SMCHD1-207ENST00000581711 TNS3Q68CZ2 1445 aa0.29□□□□□ -2.36
SMCHD1-207ENST00000581711 MYH2Q9UKX2 1941 aa0.28□□□□□ -2.36
SMCHD1-207ENST00000581711 SRCAPQ6ZRS2 3230 aa0.28□□□□□ -2.36
SMCHD1-207ENST00000581711 APCP25054 2843 aa0.28□□□□□ -2.36
SMCHD1-207ENST00000581711 PCF11O94913 1555 aaKnown RBP0.28□□□□□ -2.36
SMCHD1-207ENST00000581711 IGHV1-58A0A0C4DH39 117 aa0.28□□□□□ -2.36
SMCHD1-207ENST00000581711 TRBV6-4A0A1B0GX49 114 aa0.28□□□□□ -2.36
SMCHD1-207ENST00000581711 TLCD2A6NGC4 264 aa0.28□□□□□ -2.36
SMCHD1-207ENST00000581711 NUPR1O60356 82 aa0.28□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 142.1 ms