RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 TRGV9Q99603 122 aa14.96□□□□□ -0.01
VPS53-216ENST00000574029 PKD1P98161 4303 aa14.96□□□□□ -0.01
VPS53-216ENST00000574029 LOC102723971A0A1B0GUV8 181 aa14.95□□□□□ -0.02
VPS53-216ENST00000574029 HBE1P02100 147 aa14.95□□□□□ -0.02
VPS53-216ENST00000574029 OR2F1Q13607 317 aa14.95□□□□□ -0.02
VPS53-216ENST00000574029 SAMD13Q5VXD3 122 aa14.95□□□□□ -0.02
VPS53-216ENST00000574029 OR8I2Q8N0Y5 310 aa14.95□□□□□ -0.02
VPS53-216ENST00000574029 NUDT15Q9NV35 164 aa14.95□□□□□ -0.02
VPS53-216ENST00000574029 YTHDF2Q9Y5A9 579 aaKnown RBP14.95□□□□□ -0.02
VPS53-216ENST00000574029 A8MTW9 85 aa14.94□□□□□ -0.02
VPS53-216ENST00000574029 ADAP1O75689 374 aa14.94□□□□□ -0.02
VPS53-216ENST00000574029 H2AFB2P0C5Z0 115 aa14.94□□□□□ -0.02
VPS53-216ENST00000574029 PPP1R14BQ96C90 147 aa14.94□□□□□ -0.02
VPS53-216ENST00000574029 DYNC1H1Q14204 4646 aaKnown RBP14.94□□□□□ -0.02
VPS53-216ENST00000574029 TRAV6A0A075B6T7 132 aa14.93□□□□□ -0.02
VPS53-216ENST00000574029 IGKV1OR2-108A0A075B7D4 117 aa14.93□□□□□ -0.02
VPS53-216ENST00000574029 MED6O75586 246 aa14.93□□□□□ -0.02
VPS53-216ENST00000574029 MEOX2P50222 304 aa14.93□□□□□ -0.02
VPS53-216ENST00000574029 RRN3P1Q2M238 152 aa14.93□□□□□ -0.02
VPS53-216ENST00000574029 THAP8Q8NA92 274 aa14.93□□□□□ -0.02
VPS53-216ENST00000574029 C20orf173Q96LM9 149 aa14.93□□□□□ -0.02
VPS53-216ENST00000574029 RPRMQ9NS64 109 aa14.93□□□□□ -0.02
VPS53-216ENST00000574029 NACAE9PAV3 2078 aa14.93□□□□□ -0.02
VPS53-216ENST00000574029 HTN3P15516 51 aa14.92□□□□□ -0.02
VPS53-216ENST00000574029 RAB11AP62491 216 aa14.92□□□□□ -0.02
VPS53-216ENST00000574029 AMTNQ6UX39 209 aa14.92□□□□□ -0.02
VPS53-216ENST00000574029 C16orf92Q96LL3 132 aa14.92□□□□□ -0.02
VPS53-216ENST00000574029 C17orf77Q96MU5 243 aa14.92□□□□□ -0.02
VPS53-216ENST00000574029 DOK5Q9P104 306 aa14.92□□□□□ -0.02
VPS53-216ENST00000574029 DNAH11Q96DT5 4516 aa14.92□□□□□ -0.02
VPS53-216ENST00000574029 CFDP00746 253 aaPredicted RBP14.91□□□□□ -0.02
VPS53-216ENST00000574029 ID3Q02535 119 aa14.91□□□□□ -0.02
VPS53-216ENST00000574029 SOHLH1Q5JUK2 328 aa14.91□□□□□ -0.02
VPS53-216ENST00000574029 TMEM88Q6PEY1 159 aa14.91□□□□□ -0.02
VPS53-216ENST00000574029 ZNF431Q8TF32 576 aaPredicted RBP14.91□□□□□ -0.02
VPS53-216ENST00000574029 MAGT1Q9H0U3 335 aa14.91□□□□□ -0.02
VPS53-216ENST00000574029 SLC25A32Q9H2D1 315 aa14.91□□□□□ -0.02
VPS53-216ENST00000574029 SLC45A2Q9UMX9 530 aa14.91□□□□□ -0.02
VPS53-216ENST00000574029 SYNGR2O43760 224 aa14.9□□□□□ -0.02
VPS53-216ENST00000574029 IAPPP10997 89 aa14.9□□□□□ -0.02
VPS53-216ENST00000574029 GALR1P47211 349 aa14.9□□□□□ -0.02
VPS53-216ENST00000574029 DAD1P61803 113 aa14.9□□□□□ -0.02
VPS53-216ENST00000574029 IGF2BP2-AS1Q96M15 143 aa14.9□□□□□ -0.02
VPS53-216ENST00000574029 CIB3Q96Q77 187 aaPredicted RBP14.9□□□□□ -0.02
VPS53-216ENST00000574029 MUC4Q99102 2169 aa14.9□□□□□ -0.02
VPS53-216ENST00000574029 PRSS46E5RG02 174 aa14.89□□□□□ -0.03
VPS53-216ENST00000574029 IL5P05113 134 aa14.89□□□□□ -0.03
VPS53-216ENST00000574029 OR4D5Q8NGN0 318 aa14.89□□□□□ -0.03
VPS53-216ENST00000574029 ENKURQ8TC29 256 aa14.89□□□□□ -0.03
VPS53-216ENST00000574029 RSG1Q9BU20 258 aa14.89□□□□□ -0.03
VPS53-216ENST00000574029 ZNF98A6NK75 572 aa14.88□□□□□ -0.03
VPS53-216ENST00000574029 C1orf134Q5TEV5 83 aa14.88□□□□□ -0.03
VPS53-216ENST00000574029 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa14.88□□□□□ -0.03
VPS53-216ENST00000574029 SEC22CQ9BRL7 303 aa14.88□□□□□ -0.03
VPS53-216ENST00000574029 SLC25A22Q9H936 323 aa14.88□□□□□ -0.03
VPS53-216ENST00000574029 FAM3BP58499 235 aaPredicted RBP14.87□□□□□ -0.03
VPS53-216ENST00000574029 DEFA1P59665 94 aa14.87□□□□□ -0.03
VPS53-216ENST00000574029 DEFA3P59666 94 aa14.87□□□□□ -0.03
VPS53-216ENST00000574029 RPP30P78346 268 aaKnown RBP14.87□□□□□ -0.03
VPS53-216ENST00000574029 NRARPQ7Z6K4 114 aa14.87□□□□□ -0.03
VPS53-216ENST00000574029 ZNF575Q86XF7 245 aa14.87□□□□□ -0.03
VPS53-216ENST00000574029 C12orf45Q8N5I9 185 aaPredicted RBP14.87□□□□□ -0.03
VPS53-216ENST00000574029 C15orf53Q8NAA6 179 aa14.87□□□□□ -0.03
VPS53-216ENST00000574029 OR1B1Q8NGR6 318 aa14.87□□□□□ -0.03
VPS53-216ENST00000574029 TMEM208Q9BTX3 173 aa14.87□□□□□ -0.03
VPS53-216ENST00000574029 PAIP2BQ9ULR5 123 aaKnown RBP14.87□□□□□ -0.03
VPS53-216ENST00000574029 CRXO43186 299 aaPredicted RBP14.86□□□□□ -0.03
VPS53-216ENST00000574029 IAH1Q2TAA2 248 aaPredicted RBP14.86□□□□□ -0.03
VPS53-216ENST00000574029 TMEM182Q6ZP80 229 aaPredicted RBP14.86□□□□□ -0.03
VPS53-216ENST00000574029 OR11H7Q8NGC8 314 aa14.86□□□□□ -0.03
VPS53-216ENST00000574029 GPR82Q96P67 336 aa14.86□□□□□ -0.03
VPS53-216ENST00000574029 LYRM9A8MSI8 78 aa14.85□□□□□ -0.03
VPS53-216ENST00000574029 WRBO00258 174 aa14.85□□□□□ -0.03
VPS53-216ENST00000574029 DUSP14O95147 198 aaKnown RBP14.85□□□□□ -0.03
VPS53-216ENST00000574029 CNN1P51911 297 aaKnown RBP14.85□□□□□ -0.03
VPS53-216ENST00000574029 ZBTB8BQ8NAP8 495 aaPredicted RBP14.85□□□□□ -0.03
VPS53-216ENST00000574029 BPIFCQ8NFQ6 507 aa14.85□□□□□ -0.03
VPS53-216ENST00000574029 MARVELD1Q9BSK0 173 aa14.85□□□□□ -0.03
VPS53-216ENST00000574029 TRAV8-2A0A0B4J237 113 aa14.84□□□□□ -0.03
VPS53-216ENST00000574029 ZNF705GA8MUZ8 300 aaPredicted RBP14.84□□□□□ -0.03
VPS53-216ENST00000574029 INSP01308 110 aa14.84□□□□□ -0.03
VPS53-216ENST00000574029 PRM2P04554 102 aa14.84□□□□□ -0.03
VPS53-216ENST00000574029 ORM2P19652 201 aa14.84□□□□□ -0.03
VPS53-216ENST00000574029 GATA2P23769 480 aaPredicted RBP14.84□□□□□ -0.03
VPS53-216ENST00000574029 POLR2GP62487 172 aaKnown RBP eCLIP14.84□□□□□ -0.03
VPS53-216ENST00000574029 SPINK13Q1W4C9 94 aa14.84□□□□□ -0.03
VPS53-216ENST00000574029 SMIM8Q96KF7 97 aa14.84□□□□□ -0.03
VPS53-216ENST00000574029 M0R2Z0 102 aa14.83□□□□□ -0.04
VPS53-216ENST00000574029 PRAF2O60831 178 aa14.83□□□□□ -0.04
VPS53-216ENST00000574029 TSPOP30536 169 aa14.83□□□□□ -0.04
VPS53-216ENST00000574029 S100A7P31151 101 aa14.83□□□□□ -0.04
VPS53-216ENST00000574029 B2MP61769 119 aa14.83□□□□□ -0.04
VPS53-216ENST00000574029 TMEM147Q9BVK8 224 aa14.83□□□□□ -0.04
VPS53-216ENST00000574029 GPN1Q9HCN4 374 aaPredicted RBP14.83□□□□□ -0.04
VPS53-216ENST00000574029 INMT-MINDY4F8WBC2 141 aa14.82□□□□□ -0.04
VPS53-216ENST00000574029 IGFL4Q6B9Z1 124 aa14.82□□□□□ -0.04
VPS53-216ENST00000574029 GSKIPQ9P0R6 139 aa14.82□□□□□ -0.04
VPS53-216ENST00000574029 PLAC8L1A1L4L8 177 aa14.81□□□□□ -0.04
VPS53-216ENST00000574029 TAS2R30P59541 319 aa14.81□□□□□ -0.04
VPS53-216ENST00000574029 AKR1C1Q04828 323 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms