RNA–Protein interactions for RNA: ENST00000538570.5

COL4A6-208, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,528 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-208ENST00000538570 RPL15P61313 204 aaKnown RBP8.18□□□□□ -1.1
COL4A6-208ENST00000538570 AGMATQ9BSE5 352 aa8.18□□□□□ -1.1
COL4A6-208ENST00000538570 SCRT1Q9BWW7 348 aa8.18□□□□□ -1.1
COL4A6-208ENST00000538570 ZDBF2Q9HCK1 2354 aa8.17□□□□□ -1.1
COL4A6-208ENST00000538570 A0A087WV48 116 aa8.17□□□□□ -1.1
COL4A6-208ENST00000538570 TRAV40A0A0B4J280 105 aa8.17□□□□□ -1.1
COL4A6-208ENST00000538570 RPL36AP83881 106 aaKnown RBP8.17□□□□□ -1.1
COL4A6-208ENST00000538570 C15orf53Q8NAA6 179 aa8.17□□□□□ -1.1
COL4A6-208ENST00000538570 RPL36ALQ969Q0 106 aaKnown RBP8.17□□□□□ -1.1
COL4A6-208ENST00000538570 IGHV2-26A0A0B4J1V2 119 aa8.17□□□□□ -1.1
COL4A6-208ENST00000538570 IGHV3-73A0A0B4J1V6 119 aa8.17□□□□□ -1.1
COL4A6-208ENST00000538570 ZCCHC24Q8N2G6 241 aaKnown RBP8.17□□□□□ -1.1
COL4A6-208ENST00000538570 LOC102723996A0A087X1L8 192 aa8.17□□□□□ -1.1
COL4A6-208ENST00000538570 LYPD3O95274 346 aa8.17□□□□□ -1.1
COL4A6-208ENST00000538570 IGLV3-19P01714 112 aa8.17□□□□□ -1.1
COL4A6-208ENST00000538570 SYNJ2BPP57105 145 aa8.17□□□□□ -1.1
COL4A6-208ENST00000538570 TRGV9Q99603 122 aa8.17□□□□□ -1.1
COL4A6-208ENST00000538570 WNK3Q9BYP7 1800 aa8.17□□□□□ -1.1
COL4A6-208ENST00000538570 SPTBP11277 2137 aa8.17□□□□□ -1.1
COL4A6-208ENST00000538570 VCYO14598 125 aa8.17□□□□□ -1.1
COL4A6-208ENST00000538570 TCRAP04437 139 aa8.17□□□□□ -1.1
COL4A6-208ENST00000538570 C15orf32Q32M92 178 aa8.17□□□□□ -1.1
COL4A6-208ENST00000538570 GFI1Q99684 422 aa8.17□□□□□ -1.1
COL4A6-208ENST00000538570 ZNF319Q9P2F9 582 aa8.17□□□□□ -1.1
COL4A6-208ENST00000538570 F8WEM9 126 aa8.17□□□□□ -1.1
COL4A6-208ENST00000538570 SH2D1AO60880 128 aa8.17□□□□□ -1.1
COL4A6-208ENST00000538570 UBE2DNLQ8IWF7 75 aa8.17□□□□□ -1.1
COL4A6-208ENST00000538570 MCRIP2Q9BUT9 160 aaKnown RBP8.17□□□□□ -1.1
COL4A6-208ENST00000538570 ZNF138P52744 262 aa8.16□□□□□ -1.1
COL4A6-208ENST00000538570 TMEM243Q9BU79 118 aa8.16□□□□□ -1.1
COL4A6-208ENST00000538570 SPRR3Q9UBC9 169 aa8.16□□□□□ -1.1
COL4A6-208ENST00000538570 CASP8AP2Q9UKL3 1982 aa8.16□□□□□ -1.1
COL4A6-208ENST00000538570 LEPROTO15243 131 aa8.16□□□□□ -1.1
COL4A6-208ENST00000538570 SAP30O75446 220 aa8.16□□□□□ -1.1
COL4A6-208ENST00000538570 FXYD7P58549 80 aa8.16□□□□□ -1.1
COL4A6-208ENST00000538570 ZNF474Q6S9Z5 364 aaPredicted RBP8.16□□□□□ -1.1
COL4A6-208ENST00000538570 ZNF625Q96I27 306 aaPredicted RBP8.16□□□□□ -1.1
COL4A6-208ENST00000538570 STPG4Q8N801 248 aa8.16□□□□□ -1.1
COL4A6-208ENST00000538570 C3orf56Q8N813 242 aa8.16□□□□□ -1.1
COL4A6-208ENST00000538570 RPUSD1Q9UJJ7 312 aaKnown RBP8.16□□□□□ -1.1
COL4A6-208ENST00000538570 SVILO95425 2214 aa8.16□□□□□ -1.1
COL4A6-208ENST00000538570 KNCNA6PVL3 124 aa8.16□□□□□ -1.1
COL4A6-208ENST00000538570 DNAJC30Q96LL9 226 aa8.16□□□□□ -1.1
COL4A6-208ENST00000538570 LINC00527Q9UJ94 153 aa8.16□□□□□ -1.1
COL4A6-208ENST00000538570 RBBP6Q7Z6E9 1792 aaKnown RBP8.16□□□□□ -1.1
COL4A6-208ENST00000538570 CRYGSP22914 178 aa8.16□□□□□ -1.1
COL4A6-208ENST00000538570 SPSB3Q6PJ21 355 aa8.16□□□□□ -1.1
COL4A6-208ENST00000538570 VMO1Q7Z5L0 202 aa8.16□□□□□ -1.1
COL4A6-208ENST00000538570 NUP35Q8NFH5 326 aa8.16□□□□□ -1.1
COL4A6-208ENST00000538570 ERCC8Q13216 396 aa8.15□□□□□ -1.1
COL4A6-208ENST00000538570 CT83Q5H943 113 aa8.15□□□□□ -1.1
COL4A6-208ENST00000538570 LY96Q9Y6Y9 160 aa8.15□□□□□ -1.1
COL4A6-208ENST00000538570 PRDM6Q9NQX0 595 aa8.15□□□□□ -1.1
COL4A6-208ENST00000538570 C10orf55Q5SWW7 151 aa8.15□□□□□ -1.1
COL4A6-208ENST00000538570 C11orf44Q8N8P7 122 aa8.15□□□□□ -1.1
COL4A6-208ENST00000538570 BMPERQ8N8U9 685 aa8.15□□□□□ -1.1
COL4A6-208ENST00000538570 FGFBP3Q8TAT2 258 aa8.15□□□□□ -1.1
COL4A6-208ENST00000538570 ZNF236Q9UL36 1845 aa8.15□□□□□ -1.1
COL4A6-208ENST00000538570 TRGV1A0A0A0MS02 117 aa8.15□□□□□ -1.11
COL4A6-208ENST00000538570 TRBV7-1A0A0A6YYK4 115 aa8.15□□□□□ -1.11
COL4A6-208ENST00000538570 IGKV1-12A0A0C4DH73 117 aa8.15□□□□□ -1.11
COL4A6-208ENST00000538570 SRRM4A7MD48 611 aaKnown RBP8.15□□□□□ -1.11
COL4A6-208ENST00000538570 IGKV1D-12P01611 117 aa8.15□□□□□ -1.11
COL4A6-208ENST00000538570 TMEM200BQ69YZ2 307 aa8.15□□□□□ -1.11
COL4A6-208ENST00000538570 C16orf54Q6UWD8 224 aa8.15□□□□□ -1.11
COL4A6-208ENST00000538570 C9orf139Q6ZV77 190 aa8.15□□□□□ -1.11
COL4A6-208ENST00000538570 LHFPL1Q86WI0 220 aa8.15□□□□□ -1.11
COL4A6-208ENST00000538570 LINC00477Q96M19 166 aa8.15□□□□□ -1.11
COL4A6-208ENST00000538570 PARP14Q460N5 1801 aa8.15□□□□□ -1.11
COL4A6-208ENST00000538570 IGHV1-3A0A0C4DH29 117 aa8.15□□□□□ -1.11
COL4A6-208ENST00000538570 LTBRP36941 435 aa8.15□□□□□ -1.11
COL4A6-208ENST00000538570 GVINP1Q7Z2Y8 2422 aa8.15□□□□□ -1.11
COL4A6-208ENST00000538570 MYMXA0A1B0GTQ4 84 aa8.14□□□□□ -1.11
COL4A6-208ENST00000538570 IGHV1-8P0DP01 117 aa8.14□□□□□ -1.11
COL4A6-208ENST00000538570 AMN1Q8IY45 258 aa8.14□□□□□ -1.11
COL4A6-208ENST00000538570 RNF5Q99942 180 aa8.14□□□□□ -1.11
COL4A6-208ENST00000538570 INS-IGF2F8WCM5 200 aa8.14□□□□□ -1.11
COL4A6-208ENST00000538570 INSP01308 110 aa8.14□□□□□ -1.11
COL4A6-208ENST00000538570 DSCR9P59020 149 aa8.14□□□□□ -1.11
COL4A6-208ENST00000538570 ANKRD39Q53RE8 183 aa8.14□□□□□ -1.11
COL4A6-208ENST00000538570 C6orf226Q5I0X4 101 aa8.14□□□□□ -1.11
COL4A6-208ENST00000538570 RFNGQ9Y644 331 aa8.14□□□□□ -1.11
COL4A6-208ENST00000538570 MDC1Q14676 2089 aaKnown RBP8.14□□□□□ -1.11
COL4A6-208ENST00000538570 SBF2Q86WG5 1849 aa8.14□□□□□ -1.11
COL4A6-208ENST00000538570 E9PLN8 166 aa8.14□□□□□ -1.11
COL4A6-208ENST00000538570 IGLC2P0DOY2 106 aa8.14□□□□□ -1.11
COL4A6-208ENST00000538570 IGLC3P0DOY3 106 aa8.14□□□□□ -1.11
COL4A6-208ENST00000538570 FOXF2Q12947 444 aa8.14□□□□□ -1.11
COL4A6-208ENST00000538570 DEFB104AQ8WTQ1 72 aa8.14□□□□□ -1.11
COL4A6-208ENST00000538570 TMEM158Q8WZ71 300 aa8.14□□□□□ -1.11
COL4A6-208ENST00000538570 SNRNP200O75643 2136 aaKnown RBP8.14□□□□□ -1.11
COL4A6-208ENST00000538570 PINLYPA6NC86 204 aa8.14□□□□□ -1.11
COL4A6-208ENST00000538570 SRRM5B3KS81 715 aa8.14□□□□□ -1.11
COL4A6-208ENST00000538570 TCF15Q12870 199 aa8.14□□□□□ -1.11
COL4A6-208ENST00000538570 MINOS1Q5TGZ0 78 aa8.14□□□□□ -1.11
COL4A6-208ENST00000538570 MINOS1-NBL1R4GNA1 71 aa8.14□□□□□ -1.11
COL4A6-208ENST00000538570 ZNF672Q499Z4 452 aaPredicted RBP8.13□□□□□ -1.11
COL4A6-208ENST00000538570 LILRA1O75019 489 aa8.13□□□□□ -1.11
COL4A6-208ENST00000538570 GAS1P54826 345 aa8.13□□□□□ -1.11
COL4A6-208ENST00000538570 HGFACQ04756 655 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms