RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 RETNLBQ9BQ08 111 aa2.55□□□□□ -2
NUP54-215ENST00000514313 SNURFQ9Y675 71 aa2.55□□□□□ -2
NUP54-215ENST00000514313 MYH10P35580 1976 aa2.54□□□□□ -2
NUP54-215ENST00000514313 EML6Q6ZMW3 1958 aa2.54□□□□□ -2
NUP54-215ENST00000514313 PBRM1Q86U86 1689 aa2.54□□□□□ -2
NUP54-215ENST00000514313 IGKV3-7A0A075B6H7 116 aa2.54□□□□□ -2
NUP54-215ENST00000514313 K7ERJ3 54 aa2.54□□□□□ -2
NUP54-215ENST00000514313 KLK9Q9UKQ9 250 aa2.54□□□□□ -2
NUP54-215ENST00000514313 CHCHD2Q9Y6H1 151 aaPredicted RBP2.54□□□□□ -2
NUP54-215ENST00000514313 ARFGEF3Q5TH69 2177 aa2.53□□□□□ -2
NUP54-215ENST00000514313 IGKV2-40A0A087WW87 121 aaPredicted RBP2.53□□□□□ -2
NUP54-215ENST00000514313 A0A1W2PRE2 83 aa2.53□□□□□ -2
NUP54-215ENST00000514313 TCRBV4S1A1TA0A5B7 111 aa2.53□□□□□ -2
NUP54-215ENST00000514313 IGKV2D-40P01614 121 aaPredicted RBP2.53□□□□□ -2
NUP54-215ENST00000514313 TEX261Q6UWH6 196 aa2.53□□□□□ -2
NUP54-215ENST00000514313 SMIM15Q7Z3B0 74 aa2.53□□□□□ -2
NUP54-215ENST00000514313 ZC2HC1AQ96GY0 325 aa2.53□□□□□ -2
NUP54-215ENST00000514313 CACYBPQ9HB71 228 aaKnown RBP2.53□□□□□ -2
NUP54-215ENST00000514313 LAMTOR3Q9UHA4 124 aa2.53□□□□□ -2
NUP54-215ENST00000514313 U3KQ87 197 aa2.53□□□□□ -2
NUP54-215ENST00000514313 UBR2Q8IWV8 1755 aa2.52□□□□□ -2.01
NUP54-215ENST00000514313 CCDC160A6NGH7 325 aa2.52□□□□□ -2.01
NUP54-215ENST00000514313 H0YJX3 145 aa2.52□□□□□ -2.01
NUP54-215ENST00000514313 PLCXD2Q0VAA5 305 aa2.52□□□□□ -2.01
NUP54-215ENST00000514313 C10orf105Q8TEF2 133 aa2.52□□□□□ -2.01
NUP54-215ENST00000514313 CHCHD1Q96BP2 118 aaKnown RBP2.52□□□□□ -2.01
NUP54-215ENST00000514313 MRPL40Q9NQ50 206 aaKnown RBP2.52□□□□□ -2.01
NUP54-215ENST00000514313 OTORQ9NRC9 128 aa2.52□□□□□ -2.01
NUP54-215ENST00000514313 NUBP2Q9Y5Y2 271 aa2.52□□□□□ -2.01
NUP54-215ENST00000514313 TRAV5A0A0B4J249 113 aa2.51□□□□□ -2.01
NUP54-215ENST00000514313 IGLV1-51P01701 117 aa2.51□□□□□ -2.01
NUP54-215ENST00000514313 LYNX1P0DP58 116 aa2.51□□□□□ -2.01
NUP54-215ENST00000514313 TFAMQ00059 246 aaKnown RBP2.51□□□□□ -2.01
NUP54-215ENST00000514313 C1orf134Q5TEV5 83 aa2.51□□□□□ -2.01
NUP54-215ENST00000514313 CROCCP2Q86T23 111 aa2.51□□□□□ -2.01
NUP54-215ENST00000514313 OR5D16Q8NGK9 328 aa2.51□□□□□ -2.01
NUP54-215ENST00000514313 BORCS8Q96FH0 119 aa2.51□□□□□ -2.01
NUP54-215ENST00000514313 RMND5BQ96G75 393 aaPredicted RBP2.51□□□□□ -2.01
NUP54-215ENST00000514313 RASL12Q9NYN1 266 aa2.51□□□□□ -2.01
NUP54-215ENST00000514313 MED13Q9UHV7 2174 aa2.51□□□□□ -2.01
NUP54-215ENST00000514313 CD109Q6YHK3 1445 aa2.51□□□□□ -2.01
NUP54-215ENST00000514313 NUP98P52948 1817 aa2.5□□□□□ -2.01
NUP54-215ENST00000514313 IGKV2D-26A0A0A0MRZ7 120 aa2.5□□□□□ -2.01
NUP54-215ENST00000514313 RER1O15258 196 aa2.5□□□□□ -2.01
NUP54-215ENST00000514313 HIST1H2BKO60814 126 aa2.5□□□□□ -2.01
NUP54-215ENST00000514313 HIST1H2BJP06899 126 aa2.5□□□□□ -2.01
NUP54-215ENST00000514313 OR10J4P0C629 311 aa2.5□□□□□ -2.01
NUP54-215ENST00000514313 HBBP68871 147 aa2.5□□□□□ -2.01
NUP54-215ENST00000514313 PHF5AQ7RTV0 110 aaKnown RBP2.5□□□□□ -2.01
NUP54-215ENST00000514313 SREK1IP1Q8N9Q2 155 aaPredicted RBP2.5□□□□□ -2.01
NUP54-215ENST00000514313 OR5D14Q8NGL3 314 aa2.5□□□□□ -2.01
NUP54-215ENST00000514313 POP5Q969H6 163 aaKnown RBP2.5□□□□□ -2.01
NUP54-215ENST00000514313 DDA1Q9BW61 102 aa2.5□□□□□ -2.01
NUP54-215ENST00000514313 ARHGEF11O15085 1522 aa2.49□□□□□ -2.01
NUP54-215ENST00000514313 A0A087WX48 190 aa2.49□□□□□ -2.01
NUP54-215ENST00000514313 ZNF736B4DX44 427 aaPredicted RBP2.49□□□□□ -2.01
NUP54-215ENST00000514313 DR1Q01658 176 aa2.49□□□□□ -2.01
NUP54-215ENST00000514313 PRR15Q8IV56 129 aa2.49□□□□□ -2.01
NUP54-215ENST00000514313 C4orf3Q8WVX3 66 aa2.49□□□□□ -2.01
NUP54-215ENST00000514313 MYO5AQ9Y4I1 1855 aaKnown RBP2.49□□□□□ -2.01
NUP54-215ENST00000514313 SCN3AQ9NY46 2000 aa2.49□□□□□ -2.01
NUP54-215ENST00000514313 CEP192Q8TEP8 1941 aa2.48□□□□□ -2.01
NUP54-215ENST00000514313 NUP210LQ5VU65 1888 aa2.48□□□□□ -2.01
NUP54-215ENST00000514313 E7EUB6 86 aa2.48□□□□□ -2.01
NUP54-215ENST00000514313 C17orf112F2Z3M2 114 aa2.48□□□□□ -2.01
NUP54-215ENST00000514313 PFDN1O60925 122 aa2.48□□□□□ -2.01
NUP54-215ENST00000514313 CST7O76096 145 aa2.48□□□□□ -2.01
NUP54-215ENST00000514313 DSCR4P56555 118 aaPredicted RBP2.48□□□□□ -2.01
NUP54-215ENST00000514313 C4orf22Q6V702 233 aa2.48□□□□□ -2.01
NUP54-215ENST00000514313 ST6GALNAC3Q8NDV1 305 aa2.48□□□□□ -2.01
NUP54-215ENST00000514313 CCDC32Q9BV29 185 aa2.48□□□□□ -2.01
NUP54-215ENST00000514313 RP1L1Q8IWN7 2480 aaPredicted RBP2.47□□□□□ -2.01
NUP54-215ENST00000514313 H3BQV1 296 aa2.47□□□□□ -2.01
NUP54-215ENST00000514313 H7BYZ3 331 aa2.47□□□□□ -2.01
NUP54-215ENST00000514313 M0R233 179 aa2.47□□□□□ -2.01
NUP54-215ENST00000514313 IFNA4P05014 189 aa2.47□□□□□ -2.01
NUP54-215ENST00000514313 RAB5CP51148 216 aa2.47□□□□□ -2.01
NUP54-215ENST00000514313 CDK6Q00534 326 aa2.47□□□□□ -2.01
NUP54-215ENST00000514313 KLRD1Q13241 179 aa2.47□□□□□ -2.01
NUP54-215ENST00000514313 Q8N814 137 aa2.47□□□□□ -2.01
NUP54-215ENST00000514313 GRPEL2Q8TAA5 225 aa2.47□□□□□ -2.01
NUP54-215ENST00000514313 TP53RKQ96S44 253 aa2.47□□□□□ -2.01
NUP54-215ENST00000514313 OR2H1Q9GZK4 316 aa2.47□□□□□ -2.01
NUP54-215ENST00000514313 NAT8BQ9UHF3 227 aa2.47□□□□□ -2.01
NUP54-215ENST00000514313 TECPR2O15040 1411 aa2.47□□□□□ -2.01
NUP54-215ENST00000514313 CAMSAP2Q08AD1 1489 aa2.46□□□□□ -2.02
NUP54-215ENST00000514313 LOC110117498A0A087WWA1 95 aa2.46□□□□□ -2.02
NUP54-215ENST00000514313 TRAV10A0A0B4J240 114 aa2.46□□□□□ -2.02
NUP54-215ENST00000514313 TRDV1A0A1B0GX56 115 aa2.46□□□□□ -2.02
NUP54-215ENST00000514313 RAB37Q96AX2 223 aa2.46□□□□□ -2.02
NUP54-215ENST00000514313 ISOC1Q96CN7 298 aa2.46□□□□□ -2.02
NUP54-215ENST00000514313 CDC42SE1Q9NRR8 79 aa2.46□□□□□ -2.02
NUP54-215ENST00000514313 EXPH5Q8NEV8 1989 aa2.46□□□□□ -2.02
NUP54-215ENST00000514313 E7EQ34 232 aa2.45□□□□□ -2.02
NUP54-215ENST00000514313 CD2P06729 351 aa2.45□□□□□ -2.02
NUP54-215ENST00000514313 ANGPTL5Q86XS5 388 aa2.45□□□□□ -2.02
NUP54-215ENST00000514313 EFCAB11Q9BUY7 163 aa2.45□□□□□ -2.02
NUP54-215ENST00000514313 LRTM1Q9HBL6 345 aa2.45□□□□□ -2.02
NUP54-215ENST00000514313 TAS2R7Q9NYW3 318 aa2.45□□□□□ -2.02
NUP54-215ENST00000514313 GEMIN2O14893 280 aaKnown RBP2.44□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms